Wall clock time and date at job start Wed Apr 1 2020 04:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32138 * 119.89864 * 2 1 4 4 C 1.32080 * 120.06699 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.06053 * 179.97438 * 4 3 2 6 6 C 1.39440 * 119.87459 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.09638 * 180.02562 * 6 4 3 8 8 O 1.21519 * 120.00171 * 5.77900 * 7 6 4 9 9 N 1.34777 * 119.99746 * 185.78164 * 7 6 4 10 10 C 1.46506 * 119.99858 * 180.02562 * 9 7 6 11 11 C 1.51222 * 111.07404 * 78.35825 * 10 9 7 12 12 C 1.56593 * 104.17218 * 84.76188 * 11 10 9 13 13 C 1.56281 * 106.06886 * 6.57376 * 12 11 10 14 14 C 1.50510 * 101.75713 * 24.68212 * 13 12 11 15 15 H 1.09000 * 107.74437 * 66.77261 * 14 13 12 16 16 N 1.42702 * 128.16896 * 198.66415 * 14 13 12 17 17 C 1.36939 * 127.10605 * 331.70517 * 16 14 13 18 18 H 1.07997 * 119.99807 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99805 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00546 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99470 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47031 * 90.00378 * 21 19 17 23 23 H 1.48499 * 109.46652 * 209.99972 * 21 19 17 24 24 H 1.48494 * 109.47429 * 330.00104 * 21 19 17 25 25 C 1.49297 * 105.79141 * 151.73746 * 16 14 13 26 26 C 1.52142 * 111.09179 * 298.98489 * 10 9 7 27 27 N 1.33000 * 119.80779 * 359.74569 * 6 4 3 28 28 C 1.31809 * 119.92357 * 0.52479 * 27 6 4 29 29 C 1.50694 * 119.93443 * 179.72997 * 28 27 6 30 30 H 1.09000 * 109.47214 * 269.97556 * 1 2 3 31 31 H 1.08999 * 109.47135 * 29.97411 * 1 2 3 32 32 H 1.08997 * 109.46750 * 149.97480 * 1 2 3 33 33 H 1.08997 * 109.46974 * 96.71930 * 5 4 3 34 34 H 1.09001 * 109.47126 * 216.71482 * 5 4 3 35 35 H 1.09002 * 109.47311 * 336.71253 * 5 4 3 36 36 H 0.97000 * 120.00559 * 359.97438 * 9 7 6 37 37 H 1.09003 * 110.41374 * 202.67094 * 11 10 9 38 38 H 1.08994 * 110.41300 * 325.11567 * 11 10 9 39 39 H 1.08998 * 109.73415 * 247.60328 * 12 11 10 40 40 H 1.08999 * 110.50693 * 125.95571 * 12 11 10 41 41 H 1.08995 * 110.97091 * 266.56157 * 13 12 11 42 42 H 1.09004 * 110.96718 * 142.79949 * 13 12 11 43 43 H 0.96998 * 120.00610 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.04755 * 232.08190 * 25 16 14 45 45 H 1.08992 * 110.04886 * 110.60893 * 25 16 14 46 46 H 1.09000 * 111.14674 * 43.90976 * 26 10 9 47 47 H 1.08996 * 111.15096 * 168.13789 * 26 10 9 48 48 H 1.09000 * 109.47128 * 269.72624 * 29 28 27 49 49 H 1.08994 * 109.47664 * 29.72390 * 29 28 27 50 50 H 1.08998 * 109.47347 * 149.72874 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 -0.0001 6 6 4.1846 -0.0577 0.0005 7 6 5.6661 -0.0591 0.0017 8 8 6.2746 0.9873 0.1086 9 7 6.3390 -1.2209 -0.1159 10 6 7.8040 -1.2224 -0.1142 11 6 8.3463 -1.0798 1.2902 12 6 8.3527 -2.5426 1.8491 13 6 7.9641 -3.4657 0.6494 14 6 8.3803 -2.6279 -0.5297 15 1 9.4670 -2.5452 -0.5113 16 7 7.9667 -2.7521 -1.8897 17 6 7.5640 -3.8938 -2.5298 18 1 7.5368 -4.8317 -1.9950 19 6 7.1909 -3.8456 -3.8660 20 7 7.2236 -2.7026 -4.5176 21 14 6.6423 -5.4032 -4.7392 22 1 5.1732 -5.5620 -4.5918 23 1 6.9880 -5.3105 -6.1804 24 1 7.3295 -6.5751 -4.1396 25 6 8.0643 -1.3804 -2.4710 26 6 8.3537 -0.4127 -1.2791 27 7 3.5166 -1.2077 0.0051 28 6 2.1986 -1.2026 -0.0008 29 6 1.4415 -2.5056 -0.0017 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 4.5225 2.7116 1.0205 34 1 5.1331 2.3599 -0.6140 35 1 3.6004 3.2411 -0.4071 36 1 5.8533 -2.0563 -0.2009 37 1 9.3630 -0.6875 1.2672 38 1 7.7010 -0.4314 1.8828 39 1 7.6167 -2.6347 2.6477 40 1 9.3435 -2.8054 2.2196 41 1 6.8907 -3.6546 0.6343 42 1 8.5228 -4.4011 0.6800 43 1 6.9625 -2.6688 -5.4512 44 1 7.1239 -1.1105 -2.9517 45 1 8.8794 -1.3379 -3.1934 46 1 7.8129 0.5266 -1.3950 47 1 9.4234 -0.2371 -1.1660 48 1 1.2593 -2.8192 -1.0296 49 1 2.0282 -3.2671 0.5118 50 1 0.4892 -2.3729 0.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991749959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:45 Heat of formation + Delta-G solvation = 29.110196 kcal Electronic energy + Delta-G solvation = -32079.018105 eV Core-core repulsion = 28106.463778 eV Total energy + Delta-G solvation = -3972.554327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.64324 -41.76445 -39.53570 -36.29816 -36.07021 -35.33486 -34.37557 -33.56816 -31.65812 -31.14811 -29.81422 -28.56566 -27.67613 -26.92707 -25.94414 -24.63592 -23.51071 -22.35891 -21.89080 -21.25237 -20.27683 -19.35703 -18.53747 -18.36252 -17.35657 -16.97659 -16.42447 -16.22803 -16.05025 -15.83822 -15.73465 -15.68859 -15.05883 -14.57866 -14.33395 -14.17869 -14.06719 -13.91503 -13.78490 -13.69733 -13.60277 -13.33568 -13.17285 -13.06223 -12.96654 -12.87346 -12.84199 -12.63893 -12.56459 -12.16157 -12.13077 -12.04286 -11.88892 -11.79205 -11.57489 -11.37017 -11.15233 -10.81337 -10.73215 -10.12115 -10.10165 -9.78046 -8.88103 -7.85189 -5.20579 -0.70186 -0.07933 1.44225 1.45509 1.54217 1.65291 2.05697 2.48681 2.60306 2.85769 2.92300 3.07746 3.25618 3.34752 3.58305 3.74615 3.82870 3.86137 4.01700 4.09193 4.17100 4.27580 4.37596 4.41838 4.56506 4.62055 4.63732 4.68654 4.69723 4.74313 4.75160 4.79115 4.82453 4.90626 4.93825 4.96371 5.06750 5.07366 5.10026 5.20694 5.23904 5.28524 5.44780 5.47495 5.54120 5.58207 5.65318 5.76240 6.09246 6.16827 6.46067 6.67838 7.02926 7.16271 7.75988 8.48392 9.26796 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.004634 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.418258 B = 6040.828941 C = 7505.097767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.108 3.892 3 N -0.458 5.458 4 C 0.123 3.877 5 C -0.095 4.095 6 C -0.001 4.001 7 C 0.571 3.429 8 O -0.545 6.545 9 N -0.669 5.669 10 C 0.136 3.864 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.112 4.112 14 C 0.146 3.854 15 H 0.024 0.976 16 N -0.597 5.597 17 C -0.230 4.230 18 H 0.088 0.912 19 C -0.064 4.064 20 N -0.952 5.952 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.300 1.300 24 H -0.266 1.266 25 C 0.191 3.809 26 C -0.130 4.130 27 N -0.427 5.427 28 C 0.061 3.939 29 C -0.099 4.099 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.405 0.595 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.243 0.757 44 H 0.021 0.979 45 H 0.002 0.998 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 3.450 14.744 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.036 4.036 3 N -0.174 5.174 4 C -0.016 4.016 5 C -0.152 4.152 6 C -0.141 4.141 7 C 0.356 3.644 8 O -0.424 6.424 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.151 4.151 14 C 0.037 3.963 15 H 0.041 0.959 16 N -0.320 5.320 17 C -0.358 4.358 18 H 0.106 0.894 19 C -0.257 4.257 20 N -0.602 5.602 21 Si 0.801 3.199 22 H -0.215 1.215 23 H -0.227 1.227 24 H -0.190 1.190 25 C 0.067 3.933 26 C -0.169 4.169 27 N -0.144 5.144 28 C -0.084 4.084 29 C -0.157 4.157 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.020 0.980 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.096 0.904 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.480 4.094 14.604 18.436 hybrid contribution -0.186 -0.971 -1.452 1.757 sum -10.666 3.123 13.152 17.219 Atomic orbital electron populations 1.20997 0.83843 1.05655 1.05417 1.23211 1.00688 0.88118 0.91583 1.68376 1.07296 1.29847 1.11877 1.22505 0.90405 0.96765 0.91890 1.20934 0.99416 0.90344 1.04501 1.21965 0.95611 0.90952 1.05523 1.17748 0.85375 0.84210 0.77100 1.90653 1.68850 1.31073 1.51823 1.45577 1.06755 1.08858 1.70532 1.21668 0.79130 0.99413 0.94978 1.22053 1.01612 0.97805 0.92992 1.22901 1.02786 0.91950 0.96347 1.21878 1.00861 0.98600 0.93758 1.21060 0.96218 0.93442 0.85559 0.95916 1.43777 1.77253 1.04681 1.06288 1.19392 1.36052 0.87152 0.93239 0.89445 1.25582 1.02699 0.99714 0.97703 1.70152 1.55199 1.25411 1.09397 0.85163 0.77904 0.79560 0.77262 1.21463 1.22657 1.19030 1.21657 0.97362 0.82360 0.91956 1.22690 1.01071 0.98145 0.94976 1.68174 1.10151 1.28694 1.07369 1.22867 0.89460 0.98936 0.97164 1.20901 1.00105 0.90102 1.04554 0.87283 0.89666 0.87220 0.89004 0.89203 0.89866 0.75886 0.89421 0.91640 0.90691 0.89255 0.92442 0.90748 0.94727 0.96088 0.97996 0.91219 0.89673 0.89228 0.90379 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 9.37 71.24 0.67 -0.62 16 2 C 0.11 2.56 6.79 42.63 0.29 2.85 16 3 N -0.46 -13.21 10.34 -170.48 -1.76 -14.98 16 4 C 0.12 3.96 6.82 42.81 0.29 4.26 16 5 C -0.09 -2.70 8.88 71.24 0.63 -2.07 16 6 C 0.00 -0.04 6.75 41.89 0.28 0.24 16 7 C 0.57 21.73 7.14 86.88 0.62 22.35 16 8 O -0.54 -21.14 11.45 -3.77 -0.04 -21.19 16 9 N -0.67 -25.61 4.47 -422.19 -1.89 -27.50 16 10 C 0.14 4.98 0.42 4.32 0.00 4.98 16 11 C -0.11 -3.08 6.24 31.27 0.20 -2.88 16 12 C -0.10 -2.55 6.95 32.99 0.23 -2.32 16 13 C -0.11 -3.59 6.46 30.93 0.20 -3.39 16 14 C 0.15 5.83 2.65 46.47 0.12 5.95 16 15 H 0.02 0.94 7.98 -2.39 -0.02 0.92 16 16 N -0.60 -30.07 3.16 -668.63 -2.11 -32.19 16 17 C -0.23 -12.54 10.29 84.03 0.86 -11.67 16 18 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 19 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 20 N -0.95 -58.24 10.55 21.65 0.23 -58.01 16 21 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.19 9.85 5.33 86.96 0.46 10.31 16 26 C -0.13 -5.36 6.10 31.43 0.19 -5.16 16 27 N -0.43 -14.32 9.65 -172.54 -1.67 -15.98 16 28 C 0.06 1.59 6.79 42.68 0.29 1.87 16 29 C -0.10 -1.69 9.37 71.23 0.67 -1.02 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 0.86 6.69 -2.39 -0.02 0.85 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 2.93 5.85 -2.39 -0.01 2.92 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.40 16.37 6.92 -92.71 -0.64 15.73 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.95 7.73 -2.39 -0.02 1.93 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.93 7.17 -2.39 -0.02 1.91 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.22 16 43 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.02 1.24 7.05 -2.39 -0.02 1.22 16 45 H 0.00 0.10 7.98 -2.39 -0.02 0.08 16 46 H 0.07 2.98 6.27 -2.39 -0.01 2.96 16 47 H 0.08 3.14 8.14 -2.39 -0.02 3.13 16 48 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.12 1.06 6.70 -2.39 -0.02 1.04 16 Total: -1.00 -72.13 388.38 1.58 -70.55 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.32 Total: 31.00 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 6.48 Total: 20.51 kcal Atomic # 7 Polarization: -141.46 SS G_CDS: -7.20 Total: -148.66 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.04 Total: -21.19 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.13 1.58 -70.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.661 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds