Wall clock time and date at job start Wed Apr 1 2020 04:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32139 * 119.90593 * 2 1 4 4 C 1.32078 * 120.07484 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.06445 * 180.02562 * 4 3 2 6 6 C 1.39437 * 119.87347 * 0.02562 * 4 3 2 7 7 C 1.48157 * 120.09709 * 180.02562 * 6 4 3 8 8 O 1.21520 * 119.99810 * 356.47043 * 7 6 4 9 9 N 1.34776 * 119.99931 * 176.46554 * 7 6 4 10 10 C 1.46493 * 119.99999 * 180.02562 * 9 7 6 11 11 C 1.53588 * 112.24470 * 59.64747 * 10 9 7 12 12 C 1.54221 * 106.67639 * 121.17064 * 11 10 9 13 13 C 1.56754 * 104.50750 * 24.75580 * 12 11 10 14 14 C 1.54777 * 102.28851 * 322.68843 * 13 12 11 15 15 H 1.09000 * 111.87163 * 274.13857 * 14 13 12 16 16 N 1.46989 * 108.68656 * 150.19218 * 14 13 12 17 17 C 1.36935 * 125.57949 * 64.91490 * 16 14 13 18 18 H 1.08007 * 120.00017 * 342.50823 * 17 16 14 19 19 C 1.38809 * 120.00138 * 162.50229 * 17 16 14 20 20 N 1.31615 * 120.00092 * 329.27787 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 149.54148 * 19 17 16 22 22 H 1.48491 * 109.47513 * 269.72774 * 21 19 17 23 23 H 1.48503 * 109.47103 * 29.73278 * 21 19 17 24 24 H 1.48502 * 109.47004 * 149.72756 * 21 19 17 25 25 C 1.47363 * 108.83867 * 245.18279 * 16 14 13 26 26 C 1.54606 * 104.95370 * 24.31892 * 25 16 14 27 27 N 1.32997 * 119.80703 * 0.27328 * 6 4 3 28 28 C 1.31799 * 119.92536 * 359.45082 * 27 6 4 29 29 C 1.50700 * 119.93705 * 180.29402 * 28 27 6 30 30 H 1.08998 * 109.47268 * 89.99549 * 1 2 3 31 31 H 1.08999 * 109.47520 * 209.99926 * 1 2 3 32 32 H 1.09001 * 109.47146 * 329.99599 * 1 2 3 33 33 H 1.09000 * 109.47288 * 263.40551 * 5 4 3 34 34 H 1.09009 * 109.46744 * 23.40462 * 5 4 3 35 35 H 1.09001 * 109.47175 * 143.40341 * 5 4 3 36 36 H 0.97000 * 120.00258 * 0.02562 * 9 7 6 37 37 H 1.08998 * 110.02034 * 240.48243 * 11 10 9 38 38 H 1.09001 * 110.01384 * 1.82897 * 11 10 9 39 39 H 1.09000 * 110.49546 * 143.61081 * 12 11 10 40 40 H 1.08998 * 110.49686 * 266.14493 * 12 11 10 41 41 H 1.08997 * 111.11787 * 204.56906 * 13 12 11 42 42 H 1.08997 * 111.09818 * 80.80865 * 13 12 11 43 43 H 0.97010 * 120.00004 * 354.68142 * 20 19 17 44 44 H 1.09003 * 110.37166 * 143.26420 * 25 16 14 45 45 H 1.09005 * 110.36908 * 265.58731 * 25 16 14 46 46 H 1.09001 * 111.08940 * 205.02982 * 26 25 16 47 47 H 1.08995 * 110.78358 * 81.35321 * 26 25 16 48 48 H 1.08997 * 109.47709 * 270.25267 * 29 28 27 49 49 H 1.09000 * 109.47381 * 30.25976 * 29 28 27 50 50 H 1.09007 * 109.47064 * 150.25316 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 0.0005 5 6 4.2376 2.4558 0.0011 6 6 4.1846 -0.0577 0.0005 7 6 5.6662 -0.0591 0.0017 8 8 6.2748 0.9907 -0.0622 9 7 6.3388 -1.2248 0.0736 10 6 7.8038 -1.2262 0.0753 11 6 8.3846 -0.4349 1.2566 12 6 9.2580 -1.4186 2.0615 13 6 9.6740 -2.5155 1.0218 14 6 8.3940 -2.6582 0.1635 15 1 7.6876 -3.3631 0.6018 16 7 8.7819 -3.0498 -1.1992 17 6 9.3802 -4.2308 -1.5489 18 1 9.8584 -4.8381 -0.7945 19 6 9.3721 -4.6476 -2.8729 20 7 8.3690 -4.3205 -3.6596 21 14 10.7813 -5.6791 -3.5360 22 1 11.8309 -4.7861 -4.0891 23 1 11.3556 -6.4971 -2.4376 24 1 10.2775 -6.5743 -4.6084 25 6 8.4275 -1.9606 -2.1264 26 6 8.3945 -0.6865 -1.2512 27 7 3.5166 -1.2077 -0.0055 28 6 2.1986 -1.2026 -0.0005 29 6 1.4415 -2.5056 -0.0006 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 4.5214 2.7122 -1.0196 34 1 3.6008 3.2408 0.4093 35 1 5.1338 2.3594 0.6141 36 1 5.8530 -2.0628 0.1243 37 1 8.9941 0.3907 0.8891 38 1 7.5780 -0.0531 1.8825 39 1 10.1394 -0.9123 2.4551 40 1 8.6820 -1.8654 2.8718 41 1 9.9115 -3.4567 1.5177 42 1 10.5116 -2.1794 0.4108 43 1 7.5994 -3.8549 -3.2963 44 1 9.1825 -1.8660 -2.9069 45 1 7.4466 -2.1410 -2.5663 46 1 7.7447 0.0722 -1.6874 47 1 9.4005 -0.2953 -1.0996 48 1 1.2589 -2.8197 -1.0282 49 1 2.0283 -3.2669 0.5133 50 1 0.4893 -2.3726 0.5132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991749964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:49 Heat of formation + Delta-G solvation = 11.247043 kcal Electronic energy + Delta-G solvation = -31460.517604 eV Core-core repulsion = 27487.188673 eV Total energy + Delta-G solvation = -3973.328931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.68461 -41.54784 -39.64054 -36.44489 -36.13437 -35.39846 -34.72852 -33.46305 -31.61952 -31.19845 -29.90884 -28.30810 -28.02556 -26.92308 -25.71943 -24.67868 -23.55112 -22.61092 -21.79229 -21.32820 -20.37025 -19.55014 -19.26352 -18.61241 -17.21996 -17.06547 -16.68465 -16.29967 -16.12330 -15.86931 -15.57477 -15.33371 -15.12380 -14.82716 -14.56782 -14.43938 -14.27342 -13.99614 -13.87777 -13.74290 -13.56795 -13.45036 -13.25841 -13.18651 -13.10104 -12.87300 -12.60242 -12.52175 -12.43538 -12.27411 -12.04232 -11.95267 -11.88881 -11.85648 -11.69870 -11.55832 -11.36904 -11.07019 -10.47201 -10.23570 -10.19581 -9.90408 -9.00893 -8.32994 -5.31626 -0.77438 -0.13743 1.52828 1.57222 1.64636 1.81853 1.85697 2.51680 2.63178 2.75399 2.86996 3.14924 3.20049 3.23625 3.47358 3.53174 3.76224 3.78056 3.83872 3.94777 4.12890 4.21593 4.22454 4.33213 4.42893 4.50417 4.51452 4.62628 4.64996 4.69284 4.72070 4.75202 4.75448 4.79052 4.85498 4.91222 4.94922 5.01274 5.03462 5.05312 5.13343 5.21987 5.23921 5.27218 5.43619 5.48592 5.55578 5.73156 6.02412 6.28734 6.32240 6.58130 6.87986 6.98643 7.70965 8.30650 8.98518 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003341 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.453906 B = 8377.815215 C = 9522.157383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 N -0.458 5.458 4 C 0.128 3.872 5 C -0.099 4.099 6 C -0.003 4.003 7 C 0.576 3.424 8 O -0.533 6.533 9 N -0.687 5.687 10 C 0.169 3.831 11 C -0.102 4.102 12 C -0.109 4.109 13 C -0.120 4.120 14 C 0.151 3.849 15 H 0.039 0.961 16 N -0.609 5.609 17 C -0.336 4.336 18 H 0.064 0.936 19 C -0.079 4.079 20 N -0.942 5.942 21 Si 1.115 2.885 22 H -0.288 1.288 23 H -0.269 1.269 24 H -0.297 1.297 25 C 0.155 3.845 26 C -0.118 4.118 27 N -0.428 5.428 28 C 0.062 3.938 29 C -0.101 4.101 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.251 0.749 44 H 0.018 0.982 45 H -0.007 1.007 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 9.568 12.570 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.032 4.032 3 N -0.173 5.173 4 C -0.011 4.011 5 C -0.156 4.156 6 C -0.142 4.142 7 C 0.361 3.639 8 O -0.411 6.411 9 N -0.336 5.336 10 C 0.083 3.917 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.160 4.160 14 C 0.045 3.955 15 H 0.056 0.944 16 N -0.334 5.334 17 C -0.464 4.464 18 H 0.082 0.918 19 C -0.275 4.275 20 N -0.584 5.584 21 Si 0.940 3.060 22 H -0.215 1.215 23 H -0.194 1.194 24 H -0.223 1.223 25 C 0.029 3.971 26 C -0.157 4.157 27 N -0.146 5.146 28 C -0.083 4.083 29 C -0.159 4.159 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.243 0.757 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.011 0.989 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.394 9.517 11.150 19.857 hybrid contribution -0.822 0.000 0.692 1.074 sum -14.215 9.518 11.841 20.806 Atomic orbital electron populations 1.21041 0.83892 1.05945 1.05246 1.23200 1.00687 0.88097 0.91223 1.68403 1.07324 1.29802 1.11810 1.22530 0.90361 0.96729 0.91473 1.21010 0.99892 0.90364 1.04362 1.21841 0.95175 0.91015 1.06174 1.17749 0.85475 0.84024 0.76635 1.90693 1.68855 1.30820 1.50710 1.45776 1.06417 1.08970 1.72437 1.21582 0.78437 0.95718 0.95994 1.22191 0.99277 0.97741 0.94857 1.22635 0.99738 0.95420 0.96948 1.23073 0.97166 0.98847 0.96878 1.22054 0.95046 0.91750 0.86698 0.94354 1.44761 1.71013 1.14934 1.02681 1.19941 1.30996 0.99551 0.95962 0.91842 1.27061 1.03169 1.02512 0.94760 1.70878 1.05992 1.41310 1.40251 0.82852 0.73047 0.74689 0.75433 1.21470 1.19356 1.22350 1.21249 0.95492 0.87661 0.92649 1.22959 1.01172 0.96203 0.95402 1.68151 1.10232 1.28711 1.07494 1.22828 0.89365 0.98928 0.97181 1.20948 1.00115 0.90047 1.04755 0.87928 0.86699 0.89380 0.89867 0.89541 0.88092 0.75665 0.90424 0.91436 0.89489 0.90688 0.91910 0.92189 0.93898 0.96345 0.98949 0.91149 0.89696 0.88888 0.90576 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.78 71.23 0.70 -0.32 16 2 C 0.11 2.25 6.79 42.63 0.29 2.54 16 3 N -0.46 -11.49 10.34 -170.49 -1.76 -13.25 16 4 C 0.13 3.57 6.82 42.81 0.29 3.86 16 5 C -0.10 -2.41 8.92 71.24 0.64 -1.78 16 6 C 0.00 -0.08 6.75 41.89 0.28 0.20 16 7 C 0.58 19.28 6.92 86.88 0.60 19.89 16 8 O -0.53 -18.34 11.16 -3.78 -0.04 -18.38 16 9 N -0.69 -23.79 5.22 -418.33 -2.18 -25.97 16 10 C 0.17 6.05 0.74 5.19 0.00 6.05 16 11 C -0.10 -3.02 5.25 31.21 0.16 -2.85 16 12 C -0.11 -2.91 6.88 32.32 0.22 -2.68 16 13 C -0.12 -4.17 6.38 32.51 0.21 -3.96 16 14 C 0.15 6.16 3.59 46.24 0.17 6.33 16 15 H 0.04 1.64 7.98 -2.39 -0.02 1.62 16 16 N -0.61 -30.91 2.92 -664.20 -1.94 -32.85 16 17 C -0.34 -18.93 9.69 84.03 0.81 -18.11 16 18 H 0.06 3.53 7.99 -2.91 -0.02 3.51 16 19 C -0.08 -4.57 5.03 84.86 0.43 -4.15 16 20 N -0.94 -59.20 12.99 21.65 0.28 -58.92 16 21 Si 1.11 52.02 30.01 68.60 2.06 54.08 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 C 0.16 7.76 5.36 86.76 0.46 8.22 16 26 C -0.12 -4.72 5.77 31.80 0.18 -4.54 16 27 N -0.43 -12.54 9.64 -172.53 -1.66 -14.20 16 28 C 0.06 1.38 6.79 42.68 0.29 1.67 16 29 C -0.10 -1.40 9.78 71.24 0.70 -0.70 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.46 5.94 -2.39 -0.01 0.45 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.10 2.66 5.76 -2.39 -0.01 2.64 16 36 H 0.41 14.37 7.85 -92.71 -0.73 13.64 16 37 H 0.08 2.25 7.41 -2.39 -0.02 2.24 16 38 H 0.07 1.95 7.40 -2.39 -0.02 1.93 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 42 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 43 H 0.25 16.24 6.34 -92.70 -0.59 15.65 16 44 H 0.02 1.01 8.02 -2.39 -0.02 0.99 16 45 H -0.01 -0.40 6.91 -2.38 -0.02 -0.42 16 46 H 0.07 2.82 6.82 -2.39 -0.02 2.80 16 47 H 0.08 3.20 7.65 -2.39 -0.02 3.18 16 48 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.12 0.74 5.94 -2.38 -0.01 0.72 16 Total: -1.00 -73.04 388.23 1.61 -71.44 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.42 Total: 28.37 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.44 Total: 9.67 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -7.27 Total: -145.19 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.04 Total: -18.38 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.06 Total: 54.08 kcal Total: -73.04 1.61 -71.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.683 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds