Wall clock time and date at job start Wed Apr 1 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32143 * 119.90268 * 2 1 4 4 C 1.32078 * 120.07070 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.06097 * 179.97438 * 4 3 2 6 6 C 1.39444 * 119.87661 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.09718 * 179.97438 * 6 4 3 8 8 O 1.21518 * 119.99891 * 354.07323 * 7 6 4 9 9 N 1.34776 * 119.99933 * 174.06971 * 7 6 4 10 10 C 1.46496 * 119.99930 * 180.02562 * 9 7 6 11 11 C 1.51369 * 111.67494 * 291.93876 * 10 9 7 12 12 C 1.55693 * 104.22804 * 276.82790 * 11 10 9 13 13 C 1.56282 * 105.93436 * 352.16816 * 12 11 10 14 14 C 1.50513 * 101.76034 * 335.74184 * 13 12 11 15 15 H 1.08997 * 108.14113 * 293.75248 * 14 13 12 16 16 N 1.42708 * 128.16038 * 161.31778 * 14 13 12 17 17 C 1.36933 * 127.10254 * 28.95401 * 16 14 13 18 18 H 1.07996 * 119.99895 * 359.04974 * 17 16 14 19 19 C 1.38811 * 120.00209 * 179.05397 * 17 16 14 20 20 N 1.31625 * 119.99603 * 322.55967 * 19 17 16 21 21 Si 1.86791 * 120.00297 * 142.55640 * 19 17 16 22 22 H 1.48500 * 109.47413 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47180 * 120.00183 * 21 19 17 24 24 H 1.48501 * 109.47468 * 240.00087 * 21 19 17 25 25 C 1.49290 * 105.79210 * 209.20587 * 16 14 13 26 26 C 1.52134 * 111.49741 * 71.47446 * 10 9 7 27 27 N 1.32998 * 119.80315 * 0.26735 * 6 4 3 28 28 C 1.31804 * 119.92760 * 359.45149 * 27 6 4 29 29 C 1.50697 * 119.93582 * 180.27036 * 28 27 6 30 30 H 1.09004 * 109.47043 * 90.00178 * 1 2 3 31 31 H 1.09003 * 109.46843 * 209.99842 * 1 2 3 32 32 H 1.08991 * 109.47610 * 329.99961 * 1 2 3 33 33 H 1.09001 * 109.46866 * 263.34355 * 5 4 3 34 34 H 1.08999 * 109.47048 * 23.33651 * 5 4 3 35 35 H 1.08993 * 109.47052 * 143.34708 * 5 4 3 36 36 H 0.97003 * 119.99936 * 0.02562 * 9 7 6 37 37 H 1.09003 * 111.08444 * 157.92579 * 11 10 9 38 38 H 1.08995 * 110.19824 * 35.29628 * 11 10 9 39 39 H 1.09001 * 110.15331 * 233.05451 * 12 11 10 40 40 H 1.08999 * 110.21748 * 111.32150 * 12 11 10 41 41 H 1.08996 * 110.97167 * 217.61779 * 13 12 11 42 42 H 1.09002 * 110.96517 * 93.86320 * 13 12 11 43 43 H 0.97003 * 119.99876 * 353.27309 * 20 19 17 44 44 H 1.09007 * 110.04481 * 127.66577 * 25 16 14 45 45 H 1.08996 * 110.05551 * 249.14018 * 25 16 14 46 46 H 1.09001 * 111.15381 * 192.00433 * 26 10 9 47 47 H 1.09005 * 111.15210 * 316.18356 * 26 10 9 48 48 H 1.08998 * 109.47844 * 270.27839 * 29 28 27 49 49 H 1.09001 * 109.47407 * 30.28298 * 29 28 27 50 50 H 1.09004 * 109.46860 * 150.28007 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 -0.0001 6 6 4.1846 -0.0577 0.0005 7 6 5.6661 -0.0591 0.0005 8 8 6.2747 0.9872 -0.1082 9 7 6.3389 -1.2206 0.1211 10 6 7.8039 -1.2219 0.1217 11 6 8.3638 -0.8342 -1.2302 12 6 8.3376 -2.1580 -2.0492 13 6 7.9447 -3.2815 -1.0364 14 6 8.3798 -2.6800 0.2729 15 1 9.4665 -2.5964 0.2636 16 7 7.9731 -3.0475 1.5905 17 6 7.5711 -4.2855 2.0158 18 1 7.5245 -5.1076 1.3171 19 6 7.2235 -4.4838 3.3450 20 7 7.8920 -3.8702 4.2985 21 14 5.8072 -5.6211 3.7804 22 1 5.2241 -6.1844 2.5362 23 1 6.3057 -6.7267 4.6375 24 1 4.7662 -4.8572 4.5138 25 6 8.0704 -1.8021 2.4080 26 6 8.3614 -0.6367 1.4105 27 7 3.5166 -1.2077 -0.0054 28 6 2.1986 -1.2026 -0.0003 29 6 1.4415 -2.5056 -0.0008 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 4.5223 2.7108 -1.0209 34 1 3.6004 3.2415 0.4062 35 1 5.1331 2.3604 0.6138 36 1 5.8531 -2.0558 0.2075 37 1 9.3848 -0.4632 -1.1399 38 1 7.7278 -0.0839 -1.6998 39 1 9.3229 -2.3590 -2.4697 40 1 7.5959 -2.0937 -2.8453 41 1 8.4907 -4.2018 -1.2435 42 1 6.8690 -3.4572 -1.0467 43 1 8.6866 -3.3579 4.0814 44 1 7.1303 -1.6234 2.9300 45 1 8.8861 -1.8889 3.1257 46 1 9.4309 -0.4445 1.3249 47 1 7.8237 0.2672 1.6970 48 1 1.2592 -2.8196 -1.0285 49 1 2.0282 -3.2670 0.5131 50 1 0.4892 -2.3726 0.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991749969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:54 Heat of formation + Delta-G solvation = 50.046877 kcal Electronic energy + Delta-G solvation = -32097.247857 eV Core-core repulsion = 28125.601413 eV Total energy + Delta-G solvation = -3971.646444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.55728 -40.46618 -38.24910 -35.16120 -34.70985 -34.36708 -33.10048 -31.84125 -30.23955 -30.01060 -28.95997 -26.86508 -26.54103 -25.70426 -23.92687 -23.70315 -22.39023 -20.99878 -20.60444 -19.66850 -18.97578 -18.19176 -17.35042 -17.13663 -15.92698 -15.74343 -15.29880 -14.88634 -14.69536 -14.53353 -14.35872 -13.86299 -13.67275 -13.59628 -13.44311 -13.23978 -13.01090 -12.81763 -12.78122 -12.72226 -12.30038 -12.24324 -12.04562 -11.97066 -11.84546 -11.60856 -11.46952 -10.92199 -10.86254 -10.80518 -10.69794 -10.48435 -10.33520 -10.13545 -10.06410 -9.86756 -9.68372 -9.50354 -9.02298 -9.00110 -8.55941 -8.33052 -7.02625 -6.19894 -3.06283 0.36177 0.96887 2.83952 3.27538 3.51362 3.53704 3.67398 3.71248 3.84369 3.90858 4.26601 4.42213 4.54133 4.62619 4.80302 4.97304 5.07664 5.09998 5.14930 5.20351 5.27192 5.30907 5.42723 5.51407 5.53806 5.61067 5.63544 5.65608 5.70513 5.76667 5.80284 5.86303 5.90699 5.95693 6.09671 6.11703 6.19613 6.24966 6.31254 6.38726 6.41475 6.50391 6.63001 6.78648 6.93799 7.01831 7.07825 7.14489 7.59006 7.76538 7.95359 8.42242 8.48346 8.95748 9.78579 10.39030 11.14224 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004827 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.903101 B = 5799.022659 C = 7477.808620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.101 3.899 3 N -0.445 5.445 4 C 0.134 3.866 5 C -0.102 4.102 6 C 0.029 3.971 7 C 0.573 3.427 8 O -0.534 6.534 9 N -0.666 5.666 10 C 0.128 3.872 11 C -0.111 4.111 12 C -0.117 4.117 13 C -0.114 4.114 14 C 0.165 3.835 15 H 0.022 0.978 16 N -0.583 5.583 17 C -0.350 4.350 18 H 0.074 0.926 19 C -0.012 4.012 20 N -0.901 5.901 21 Si 1.045 2.955 22 H -0.291 1.291 23 H -0.296 1.296 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.127 4.127 27 N -0.401 5.401 28 C 0.070 3.930 29 C -0.104 4.104 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.415 0.585 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.270 0.730 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 7.684 -11.834 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.041 4.041 3 N -0.161 5.161 4 C -0.006 4.006 5 C -0.160 4.160 6 C -0.112 4.112 7 C 0.356 3.644 8 O -0.412 6.412 9 N -0.316 5.316 10 C 0.041 3.959 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.152 4.152 14 C 0.054 3.946 15 H 0.039 0.961 16 N -0.308 5.308 17 C -0.476 4.476 18 H 0.092 0.908 19 C -0.215 4.215 20 N -0.541 5.541 21 Si 0.874 3.126 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.218 1.218 25 C 0.021 3.979 26 C -0.166 4.166 27 N -0.118 5.118 28 C -0.073 4.073 29 C -0.162 4.162 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.029 7.695 -10.598 17.122 hybrid contribution 0.656 0.006 -1.113 1.292 sum -10.373 7.701 -11.711 17.437 Atomic orbital electron populations 1.20818 0.87544 1.04253 1.03622 1.22379 0.98474 0.88984 0.94263 1.68280 1.07906 1.28822 1.11087 1.22324 0.89702 0.96682 0.91888 1.21022 1.00046 0.90482 1.04420 1.22098 0.96129 0.90029 1.02986 1.17551 0.84637 0.84540 0.77629 1.90690 1.68342 1.30925 1.51228 1.45588 1.06629 1.09189 1.70150 1.21595 0.79198 1.01215 0.93929 1.21896 1.01104 0.97287 0.94683 1.22825 1.00880 0.94207 0.97628 1.21828 1.01367 0.97529 0.94520 1.20739 0.96021 0.90318 0.87492 0.96128 1.43697 1.78526 1.05542 1.02986 1.19626 1.45168 0.86638 0.96190 0.90848 1.25503 1.02715 1.02374 0.90938 1.70746 1.16622 1.32753 1.33949 0.83877 0.77737 0.75881 0.75065 1.21696 1.22397 1.21788 1.22094 0.99402 0.83767 0.92625 1.22573 1.00353 0.98615 0.95060 1.68222 1.08526 1.28618 1.06454 1.22124 0.90110 0.96901 0.98204 1.20793 0.99350 0.92467 1.03563 0.89687 0.89577 0.90023 0.89746 0.91305 0.87332 0.74723 0.90803 0.91113 0.91851 0.92214 0.91712 0.91446 0.91820 0.94215 0.94426 0.90828 0.91025 0.89907 0.89551 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.78 36.00 0.35 -0.46 16 2 C 0.10 1.25 6.79 -82.28 -0.56 0.69 16 3 N -0.45 -6.34 10.34 -5.23 -0.05 -6.39 16 4 C 0.13 2.04 6.82 -82.03 -0.56 1.48 16 5 C -0.10 -1.36 8.88 36.01 0.32 -1.04 16 6 C 0.03 0.48 6.75 -82.84 -0.56 -0.07 16 7 C 0.57 10.11 7.10 -12.19 -0.09 10.02 16 8 O -0.53 -9.59 11.49 5.35 0.06 -9.53 16 9 N -0.67 -12.15 4.39 -47.35 -0.21 -12.36 16 10 C 0.13 2.31 0.38 -130.64 -0.05 2.26 16 11 C -0.11 -1.71 6.06 -26.12 -0.16 -1.87 16 12 C -0.12 -1.67 6.93 -23.53 -0.16 -1.83 16 13 C -0.11 -1.95 6.45 -26.21 -0.17 -2.12 16 14 C 0.16 3.30 2.65 -68.72 -0.18 3.12 16 15 H 0.02 0.44 7.96 -51.93 -0.41 0.03 16 16 N -0.58 -14.11 3.12 -162.74 -0.51 -14.61 16 17 C -0.35 -9.48 9.97 -15.06 -0.15 -9.63 16 18 H 0.07 1.99 8.04 -52.49 -0.42 1.57 16 19 C -0.01 -0.34 5.13 -17.43 -0.09 -0.43 16 20 N -0.90 -26.79 12.95 55.49 0.72 -26.07 16 21 Si 1.04 25.02 30.05 -169.99 -5.11 19.92 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.15 3.38 5.43 -0.81 0.00 3.38 16 26 C -0.13 -2.42 6.20 -25.49 -0.16 -2.58 16 27 N -0.40 -6.47 9.65 -5.88 -0.06 -6.53 16 28 C 0.07 0.93 6.79 -82.42 -0.56 0.37 16 29 C -0.10 -0.99 9.78 36.00 0.35 -0.64 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.49 5.94 -51.93 -0.31 0.19 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 1.58 5.85 -51.93 -0.30 1.28 16 36 H 0.41 8.10 7.11 -40.82 -0.29 7.81 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.13 6.85 -51.93 -0.36 0.77 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.19 7.28 -51.93 -0.38 0.82 16 43 H 0.27 8.05 6.17 -40.82 -0.25 7.80 16 44 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.94 6.49 -51.93 -0.34 0.60 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.07 1.37 7.19 -51.93 -0.37 1.00 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.08 0.56 5.94 -51.93 -0.31 0.26 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -31.56 387.73 -9.35 -40.90 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.61 Total: 8.19 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.42 Total: 0.63 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -0.11 Total: -65.96 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.11 Total: 19.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.56 -9.35 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.951 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds