Wall clock time and date at job start Wed Apr 1 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32143 * 119.90268 * 2 1 4 4 C 1.32078 * 120.07070 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.06097 * 179.97438 * 4 3 2 6 6 C 1.39444 * 119.87661 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.09718 * 179.97438 * 6 4 3 8 8 O 1.21518 * 119.99891 * 354.07323 * 7 6 4 9 9 N 1.34776 * 119.99933 * 174.06971 * 7 6 4 10 10 C 1.46496 * 119.99930 * 180.02562 * 9 7 6 11 11 C 1.51369 * 111.67494 * 291.93876 * 10 9 7 12 12 C 1.55693 * 104.22804 * 276.82790 * 11 10 9 13 13 C 1.56282 * 105.93436 * 352.16816 * 12 11 10 14 14 C 1.50513 * 101.76034 * 335.74184 * 13 12 11 15 15 H 1.08997 * 108.14113 * 293.75248 * 14 13 12 16 16 N 1.42708 * 128.16038 * 161.31778 * 14 13 12 17 17 C 1.36933 * 127.10254 * 28.95401 * 16 14 13 18 18 H 1.07996 * 119.99895 * 359.04974 * 17 16 14 19 19 C 1.38811 * 120.00209 * 179.05397 * 17 16 14 20 20 N 1.31625 * 119.99603 * 322.55967 * 19 17 16 21 21 Si 1.86791 * 120.00297 * 142.55640 * 19 17 16 22 22 H 1.48500 * 109.47413 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47180 * 120.00183 * 21 19 17 24 24 H 1.48501 * 109.47468 * 240.00087 * 21 19 17 25 25 C 1.49290 * 105.79210 * 209.20587 * 16 14 13 26 26 C 1.52134 * 111.49741 * 71.47446 * 10 9 7 27 27 N 1.32998 * 119.80315 * 0.26735 * 6 4 3 28 28 C 1.31804 * 119.92760 * 359.45149 * 27 6 4 29 29 C 1.50697 * 119.93582 * 180.27036 * 28 27 6 30 30 H 1.09004 * 109.47043 * 90.00178 * 1 2 3 31 31 H 1.09003 * 109.46843 * 209.99842 * 1 2 3 32 32 H 1.08991 * 109.47610 * 329.99961 * 1 2 3 33 33 H 1.09001 * 109.46866 * 263.34355 * 5 4 3 34 34 H 1.08999 * 109.47048 * 23.33651 * 5 4 3 35 35 H 1.08993 * 109.47052 * 143.34708 * 5 4 3 36 36 H 0.97003 * 119.99936 * 0.02562 * 9 7 6 37 37 H 1.09003 * 111.08444 * 157.92579 * 11 10 9 38 38 H 1.08995 * 110.19824 * 35.29628 * 11 10 9 39 39 H 1.09001 * 110.15331 * 233.05451 * 12 11 10 40 40 H 1.08999 * 110.21748 * 111.32150 * 12 11 10 41 41 H 1.08996 * 110.97167 * 217.61779 * 13 12 11 42 42 H 1.09002 * 110.96517 * 93.86320 * 13 12 11 43 43 H 0.97003 * 119.99876 * 353.27309 * 20 19 17 44 44 H 1.09007 * 110.04481 * 127.66577 * 25 16 14 45 45 H 1.08996 * 110.05551 * 249.14018 * 25 16 14 46 46 H 1.09001 * 111.15381 * 192.00433 * 26 10 9 47 47 H 1.09005 * 111.15210 * 316.18356 * 26 10 9 48 48 H 1.08998 * 109.47844 * 270.27839 * 29 28 27 49 49 H 1.09001 * 109.47407 * 30.28298 * 29 28 27 50 50 H 1.09004 * 109.46860 * 150.28007 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 -0.0001 6 6 4.1846 -0.0577 0.0005 7 6 5.6661 -0.0591 0.0005 8 8 6.2747 0.9872 -0.1082 9 7 6.3389 -1.2206 0.1211 10 6 7.8039 -1.2219 0.1217 11 6 8.3638 -0.8342 -1.2302 12 6 8.3376 -2.1580 -2.0492 13 6 7.9447 -3.2815 -1.0364 14 6 8.3798 -2.6800 0.2729 15 1 9.4665 -2.5964 0.2636 16 7 7.9731 -3.0475 1.5905 17 6 7.5711 -4.2855 2.0158 18 1 7.5245 -5.1076 1.3171 19 6 7.2235 -4.4838 3.3450 20 7 7.8920 -3.8702 4.2985 21 14 5.8072 -5.6211 3.7804 22 1 5.2241 -6.1844 2.5362 23 1 6.3057 -6.7267 4.6375 24 1 4.7662 -4.8572 4.5138 25 6 8.0704 -1.8021 2.4080 26 6 8.3614 -0.6367 1.4105 27 7 3.5166 -1.2077 -0.0054 28 6 2.1986 -1.2026 -0.0003 29 6 1.4415 -2.5056 -0.0008 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 4.5223 2.7108 -1.0209 34 1 3.6004 3.2415 0.4062 35 1 5.1331 2.3604 0.6138 36 1 5.8531 -2.0558 0.2075 37 1 9.3848 -0.4632 -1.1399 38 1 7.7278 -0.0839 -1.6998 39 1 9.3229 -2.3590 -2.4697 40 1 7.5959 -2.0937 -2.8453 41 1 8.4907 -4.2018 -1.2435 42 1 6.8690 -3.4572 -1.0467 43 1 8.6866 -3.3579 4.0814 44 1 7.1303 -1.6234 2.9300 45 1 8.8861 -1.8889 3.1257 46 1 9.4309 -0.4445 1.3249 47 1 7.8237 0.2672 1.6970 48 1 1.2592 -2.8196 -1.0285 49 1 2.0282 -3.2670 0.5131 50 1 0.4892 -2.3726 0.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991749969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:53 Heat of formation + Delta-G solvation = 29.890967 kcal Electronic energy + Delta-G solvation = -32098.121883 eV Core-core repulsion = 28125.601413 eV Total energy + Delta-G solvation = -3972.520470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.68893 -41.88893 -39.64362 -36.52426 -36.17005 -35.36168 -34.49378 -33.68346 -31.71066 -31.17268 -29.84330 -28.47198 -27.80306 -27.00855 -25.85820 -24.66923 -23.55898 -22.39328 -21.99562 -21.38332 -20.34875 -19.41028 -19.05496 -18.56353 -17.33169 -17.01394 -16.34382 -16.26105 -16.17216 -15.97294 -15.74144 -15.54965 -15.21655 -14.75782 -14.57070 -14.39163 -14.21742 -13.98033 -13.79686 -13.71172 -13.61908 -13.48575 -13.37361 -13.16572 -12.97372 -12.85194 -12.59243 -12.51424 -12.43825 -12.27303 -12.19435 -12.00520 -11.88830 -11.86088 -11.66378 -11.46373 -11.24259 -10.94770 -10.41849 -10.18160 -10.14026 -9.85029 -9.05124 -8.40339 -5.20868 -0.72951 -0.10182 1.54846 1.60059 1.60854 1.78156 1.98084 2.56964 2.60506 2.82174 2.89482 2.93790 3.08618 3.23472 3.53949 3.64203 3.75403 3.81011 3.96085 3.96540 4.11436 4.15306 4.23470 4.27742 4.39123 4.50930 4.52767 4.64635 4.66815 4.68323 4.73146 4.77393 4.80456 4.85397 4.85638 4.89055 4.96176 4.98930 5.02207 5.05022 5.11554 5.13673 5.24170 5.31802 5.42988 5.46341 5.63286 5.73505 6.07122 6.25672 6.41267 6.64074 6.83961 7.08550 7.69787 8.36653 8.95134 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004827 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.903101 B = 5799.022659 C = 7477.808620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.109 3.891 3 N -0.458 5.458 4 C 0.125 3.875 5 C -0.095 4.095 6 C -0.003 4.003 7 C 0.572 3.428 8 O -0.542 6.542 9 N -0.672 5.672 10 C 0.139 3.861 11 C -0.105 4.105 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.149 3.851 15 H 0.019 0.981 16 N -0.598 5.598 17 C -0.345 4.345 18 H 0.071 0.929 19 C -0.068 4.068 20 N -0.935 5.935 21 Si 1.096 2.904 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.296 1.296 25 C 0.155 3.845 26 C -0.115 4.115 27 N -0.428 5.428 28 C 0.061 3.939 29 C -0.102 4.102 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.407 0.593 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.256 0.744 44 H 0.003 0.997 45 H 0.014 0.986 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 7.654 -14.118 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.034 4.034 3 N -0.173 5.173 4 C -0.014 4.014 5 C -0.152 4.152 6 C -0.142 4.142 7 C 0.357 3.643 8 O -0.421 6.421 9 N -0.321 5.321 10 C 0.051 3.949 11 C -0.144 4.144 12 C -0.141 4.141 13 C -0.149 4.149 14 C 0.040 3.960 15 H 0.036 0.964 16 N -0.322 5.322 17 C -0.472 4.472 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.577 5.577 21 Si 0.921 3.079 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.223 1.223 25 C 0.030 3.970 26 C -0.154 4.154 27 N -0.145 5.145 28 C -0.084 4.084 29 C -0.159 4.159 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.021 0.979 45 H 0.032 0.968 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.088 0.912 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.189 7.694 -12.930 20.008 hybrid contribution 1.250 0.006 -0.417 1.318 sum -11.939 7.700 -13.347 19.492 Atomic orbital electron populations 1.21033 0.83864 1.05722 1.05413 1.23188 1.00677 0.88079 0.91447 1.68390 1.07302 1.29786 1.11861 1.22517 0.90387 0.96716 0.91756 1.20945 0.99453 0.90304 1.04521 1.21935 0.95484 0.90967 1.05844 1.17760 0.85420 0.84081 0.77031 1.90670 1.68884 1.30928 1.51594 1.45614 1.06578 1.09131 1.70818 1.21587 0.79384 0.99188 0.94743 1.21906 1.01749 0.98000 0.92742 1.22761 1.02683 0.91874 0.96783 1.21837 1.00795 0.98763 0.93487 1.20990 0.95853 0.92302 0.86866 0.96353 1.43814 1.78557 1.04857 1.04970 1.19845 1.43715 0.87778 0.95874 0.91066 1.26721 1.04376 1.04036 0.91401 1.70862 1.17287 1.35031 1.34540 0.83174 0.74738 0.74232 0.75706 1.19178 1.22126 1.22273 1.21899 0.96566 0.85373 0.93167 1.22487 1.01670 0.96609 0.94650 1.68184 1.10215 1.28751 1.07360 1.22840 0.89411 0.98940 0.97175 1.20955 0.99894 0.90014 1.05078 0.87407 0.87021 0.89620 0.89078 0.89807 0.89023 0.75654 0.89120 0.91279 0.89426 0.90741 0.91380 0.92379 0.93373 0.97901 0.96837 0.88829 0.91279 0.87877 0.91230 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.78 71.23 0.70 -0.50 16 2 C 0.11 2.45 6.79 42.63 0.29 2.74 16 3 N -0.46 -12.45 10.34 -170.47 -1.76 -14.22 16 4 C 0.13 3.78 6.82 42.81 0.29 4.08 16 5 C -0.09 -2.50 8.88 71.24 0.63 -1.87 16 6 C 0.00 -0.10 6.75 41.89 0.28 0.19 16 7 C 0.57 20.58 7.10 86.88 0.62 21.19 16 8 O -0.54 -19.67 11.49 -3.77 -0.04 -19.71 16 9 N -0.67 -24.95 4.39 -422.00 -1.85 -26.80 16 10 C 0.14 4.96 0.38 4.37 0.00 4.97 16 11 C -0.11 -3.05 6.06 30.99 0.19 -2.86 16 12 C -0.10 -2.66 6.93 32.67 0.23 -2.44 16 13 C -0.11 -3.66 6.45 30.93 0.20 -3.46 16 14 C 0.15 5.96 2.65 46.47 0.12 6.09 16 15 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16 16 N -0.60 -29.80 3.12 -668.80 -2.09 -31.89 16 17 C -0.34 -19.12 9.97 84.03 0.84 -18.28 16 18 H 0.07 3.91 8.04 -2.91 -0.02 3.89 16 19 C -0.07 -3.91 5.13 84.86 0.44 -3.48 16 20 N -0.94 -57.96 12.95 21.65 0.28 -57.68 16 21 Si 1.10 51.50 30.05 68.60 2.06 53.56 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 C 0.15 7.59 5.43 86.93 0.47 8.06 16 26 C -0.12 -4.48 6.20 31.40 0.19 -4.29 16 27 N -0.43 -13.82 9.65 -172.53 -1.67 -15.49 16 28 C 0.06 1.53 6.79 42.68 0.29 1.82 16 29 C -0.10 -1.67 9.78 71.23 0.70 -0.98 16 30 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.11 0.74 5.94 -2.39 -0.01 0.73 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.74 5.85 -2.39 -0.01 2.72 16 36 H 0.41 16.35 7.11 -92.71 -0.66 15.69 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.07 6.85 -2.39 -0.02 2.05 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 2.03 7.28 -2.39 -0.02 2.01 16 43 H 0.26 16.13 6.17 -92.71 -0.57 15.55 16 44 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 45 H 0.01 0.73 6.49 -2.39 -0.02 0.71 16 46 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.07 2.72 7.19 -2.38 -0.02 2.70 16 48 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.12 1.09 5.94 -2.38 -0.01 1.08 16 Total: -1.00 -72.15 387.73 1.91 -70.24 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.50 Total: 31.01 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.47 Total: 10.98 kcal Atomic # 7 Polarization: -138.99 SS G_CDS: -7.09 Total: -146.08 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.06 Total: 53.56 kcal Total: -72.15 1.91 -70.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.134 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds