Wall clock time and date at job start Wed Apr 1 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38805 * 120.42632 * 2 1 4 4 C 1.39501 * 118.26265 * 180.27725 * 3 2 1 5 5 C 1.48451 * 120.55228 * 179.71263 * 4 3 2 6 6 O 1.21475 * 120.00117 * 359.73341 * 5 4 3 7 7 N 1.34780 * 119.99928 * 179.72330 * 5 4 3 8 8 C 1.47165 * 125.65109 * 359.97438 * 7 5 4 9 9 C 1.55337 * 106.96529 * 180.98186 * 8 7 5 10 10 H 1.09004 * 112.91338 * 214.96218 * 9 8 7 11 11 C 1.53006 * 106.41860 * 91.60239 * 9 8 7 12 12 C 1.52595 * 111.05298 * 197.21087 * 11 9 8 13 13 C 1.53328 * 108.40971 * 62.35154 * 12 11 9 14 14 C 1.52819 * 108.09330 * 295.87168 * 13 12 11 15 15 H 1.09003 * 108.96645 * 179.45783 * 14 13 12 16 16 N 1.46496 * 109.03143 * 298.33922 * 14 13 12 17 17 C 1.36945 * 119.99718 * 277.23752 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.50734 * 111.74388 * 58.92224 * 14 13 12 26 26 H 1.09003 * 109.26931 * 186.22900 * 25 14 13 27 27 C 1.47822 * 125.64470 * 180.02562 * 7 5 4 28 28 N 1.33111 * 118.90035 * 359.44769 * 4 3 2 29 29 C 1.31553 * 120.73358 * 0.27131 * 28 4 3 30 30 C 1.50703 * 119.03978 * 180.02562 * 29 28 4 31 31 N 1.31909 * 121.92137 * 0.02562 * 29 28 4 32 32 H 1.09000 * 109.47250 * 270.28259 * 1 2 3 33 33 H 1.09002 * 109.47275 * 30.28203 * 1 2 3 34 34 H 1.09001 * 109.47096 * 150.27791 * 1 2 3 35 35 H 1.07995 * 120.87529 * 0.02562 * 3 2 1 36 36 H 1.08999 * 109.96660 * 61.59919 * 8 7 5 37 37 H 1.09010 * 109.99065 * 300.37391 * 8 7 5 38 38 H 1.08997 * 109.16393 * 317.61348 * 11 9 8 39 39 H 1.08998 * 109.16647 * 76.85859 * 11 9 8 40 40 H 1.09006 * 109.67285 * 182.08417 * 12 11 9 41 41 H 1.08999 * 109.67590 * 302.61965 * 12 11 9 42 42 H 1.09001 * 109.73461 * 176.22291 * 13 12 11 43 43 H 1.08997 * 109.73577 * 55.52957 * 13 12 11 44 44 H 0.96996 * 120.00499 * 97.23482 * 16 14 13 45 45 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 46 46 H 1.08999 * 110.50586 * 84.68886 * 27 7 5 47 47 H 1.08992 * 110.51126 * 321.97673 * 27 7 5 48 48 H 1.09002 * 109.47174 * 90.00239 * 30 29 28 49 49 H 1.09001 * 109.47123 * 209.99729 * 30 29 28 50 50 H 1.09002 * 109.46839 * 329.99840 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0059 5 6 4.4063 2.3932 -0.0126 6 8 3.8494 3.4728 -0.0179 7 7 5.7525 2.3294 -0.0127 8 6 6.5527 1.0943 -0.0060 9 6 8.0459 1.5217 0.0165 10 1 8.6884 0.8495 -0.5523 11 6 8.4523 1.5958 1.4898 12 6 9.7386 2.3980 1.6639 13 6 9.4824 3.8331 1.1887 14 6 9.1762 3.7900 -0.3079 15 1 8.9819 4.8034 -0.6591 16 7 10.3396 3.2534 -1.0182 17 6 11.3854 4.0771 -1.3396 18 1 11.3521 5.1223 -1.0698 19 6 12.4880 3.5686 -2.0122 20 7 12.5283 2.2949 -2.3415 21 14 13.9141 4.6924 -2.4513 22 1 13.6816 5.2864 -3.7923 23 1 14.0196 5.7760 -1.4414 24 1 15.1750 3.9080 -2.4693 25 6 7.9767 2.9278 -0.6078 26 1 7.8611 2.8354 -1.6878 27 6 6.6699 3.4885 -0.0184 28 7 4.2028 -0.0445 -0.0001 29 6 3.4955 -1.1537 0.0057 30 6 4.2130 -2.4789 0.0128 31 7 2.1764 -1.1397 0.0055 32 1 -0.3634 0.0051 1.0276 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5095 35 1 1.6914 2.1442 0.0004 36 1 6.3458 0.5119 -0.9039 37 1 6.3208 0.5048 0.8812 38 1 7.6536 2.0728 2.0577 39 1 8.6073 0.5859 1.8695 40 1 10.0271 2.4054 2.7151 41 1 10.5338 1.9505 1.0677 42 1 10.3681 4.4432 1.3658 43 1 8.6322 4.2526 1.7266 44 1 10.3693 2.3148 -1.2608 45 1 13.2987 1.9397 -2.8119 46 1 6.8331 3.8513 0.9963 47 1 6.2762 4.2840 -0.6509 48 1 4.3859 -2.7930 1.0421 49 1 3.6034 -3.2249 -0.4971 50 1 5.1686 -2.3774 -0.5016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992832998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:42 Heat of formation + Delta-G solvation = 24.921393 kcal Electronic energy + Delta-G solvation = -30797.419409 eV Core-core repulsion = 26824.683443 eV Total energy + Delta-G solvation = -3972.735967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.63759 -40.37846 -38.62671 -35.71797 -34.90495 -33.75784 -33.36700 -31.48333 -30.55994 -29.60208 -29.32947 -28.50887 -26.61554 -25.61568 -24.01563 -22.65556 -22.54904 -21.87049 -20.98936 -19.83439 -18.36421 -17.98578 -17.18565 -16.79985 -16.20800 -16.04550 -15.70105 -15.55356 -14.88711 -14.59595 -14.54362 -13.91925 -13.82692 -13.78092 -13.58142 -13.42613 -13.36499 -12.97769 -12.82774 -12.70597 -12.63727 -12.59430 -12.42376 -11.67794 -11.55784 -11.34613 -11.32343 -11.06447 -10.93215 -10.84499 -10.81413 -10.69907 -10.49692 -10.14010 -10.12634 -9.73763 -9.73176 -9.58419 -9.52908 -9.38412 -8.85103 -8.60125 -6.94912 -5.76857 -3.04715 0.23431 0.57268 2.56390 2.70508 3.43363 3.47781 3.49089 3.49657 3.50135 3.57953 4.05706 4.49732 4.56222 4.57241 4.69839 4.82727 4.96247 5.02965 5.06302 5.08087 5.16919 5.25517 5.36146 5.41066 5.42710 5.49779 5.57521 5.63501 5.65189 5.68151 5.79613 5.81866 5.89871 5.95041 6.03334 6.06804 6.12165 6.15608 6.22852 6.35136 6.41460 6.48583 6.53934 6.58246 6.83142 6.87234 7.04310 7.12111 7.39520 7.66082 7.71076 7.94358 8.41981 9.53691 10.10567 10.46045 11.45796 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020088 B = 0.002488 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.529232 B =11250.986857 C =11661.133590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.178 3.822 3 C -0.180 4.180 4 C 0.145 3.855 5 C 0.578 3.422 6 O -0.533 6.533 7 N -0.589 5.589 8 C 0.117 3.883 9 C -0.091 4.091 10 H 0.101 0.899 11 C -0.107 4.107 12 C -0.113 4.113 13 C -0.134 4.134 14 C 0.190 3.810 15 H 0.046 0.954 16 N -0.719 5.719 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.283 1.283 24 H -0.292 1.292 25 C -0.095 4.095 26 H 0.079 0.921 27 C 0.112 3.888 28 N -0.492 5.492 29 C 0.319 3.681 30 C -0.086 4.086 31 N -0.510 5.510 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 -8.114 7.413 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 C -0.203 4.203 4 C -0.002 4.002 5 C 0.364 3.636 6 O -0.409 6.409 7 N -0.320 5.320 8 C -0.005 4.005 9 C -0.110 4.110 10 H 0.120 0.880 11 C -0.144 4.144 12 C -0.150 4.150 13 C -0.174 4.174 14 C 0.079 3.921 15 H 0.064 0.936 16 N -0.361 5.361 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.208 1.208 24 H -0.219 1.219 25 C -0.115 4.115 26 H 0.098 0.902 27 C -0.010 4.010 28 N -0.210 5.210 29 C 0.052 3.948 30 C -0.144 4.144 31 N -0.226 5.226 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.299 -8.227 7.370 23.992 hybrid contribution 0.460 1.052 -0.341 1.198 sum -20.839 -7.174 7.029 23.133 Atomic orbital electron populations 1.20807 0.87183 1.04388 1.03947 1.21821 0.97845 0.87603 0.89685 1.22756 0.94561 1.01321 1.01615 1.21603 0.91915 0.92454 0.94271 1.17392 0.81043 0.86990 0.78208 1.90791 1.70556 1.28327 1.51257 1.48456 1.04137 1.10030 1.69405 1.22553 0.89850 0.85451 1.02673 1.22290 0.94113 0.97348 0.97262 0.88048 1.21516 0.98172 0.99905 0.94851 1.21397 0.97526 0.96271 0.99825 1.22190 1.00210 0.96509 0.98518 1.19477 0.86198 0.95243 0.91151 0.93587 1.42384 1.16415 1.09997 1.67256 1.19224 0.95409 0.92175 1.29770 0.91244 1.24699 0.98594 0.96050 1.01568 1.69652 1.30862 1.11936 1.45730 0.86232 0.82348 0.79619 0.78247 1.21844 1.20838 1.21884 1.21764 0.93888 0.95193 1.00665 0.90237 1.22352 0.88465 0.88308 1.01828 1.68492 1.40946 0.98025 1.13500 1.23335 0.86420 0.94783 0.90249 1.20614 1.00239 0.89392 1.04157 1.68056 1.09900 1.30507 1.14158 0.89401 0.89765 0.89653 0.82365 0.90925 0.90500 0.92905 0.92578 0.93528 0.90152 0.91837 0.93842 0.78205 0.93594 0.90583 0.90238 0.89384 0.89482 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.22 36.01 0.37 -0.23 16 2 C 0.18 1.70 6.83 -82.23 -0.56 1.14 16 3 C -0.18 -1.94 9.41 -38.90 -0.37 -2.31 16 4 C 0.15 1.88 6.75 -82.63 -0.56 1.32 16 5 C 0.58 8.61 7.86 -12.05 -0.09 8.52 16 6 O -0.53 -9.08 16.70 5.39 0.09 -8.99 16 7 N -0.59 -8.41 3.34 -170.94 -0.57 -8.98 16 8 C 0.12 1.52 4.71 -2.44 -0.01 1.51 16 9 C -0.09 -1.30 3.28 -88.85 -0.29 -1.59 16 10 H 0.10 1.53 7.97 -51.93 -0.41 1.12 16 11 C -0.11 -1.47 4.62 -26.94 -0.12 -1.59 16 12 C -0.11 -1.81 5.85 -26.77 -0.16 -1.97 16 13 C -0.13 -2.28 5.44 -26.65 -0.14 -2.43 16 14 C 0.19 3.53 2.52 -69.16 -0.17 3.35 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.72 -16.78 4.18 -54.63 -0.23 -17.01 16 17 C -0.23 -6.23 9.89 -15.06 -0.15 -6.38 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 21 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 C -0.10 -1.51 2.30 -90.75 -0.21 -1.72 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 27 C 0.11 1.64 5.85 -2.83 -0.02 1.62 16 28 N -0.49 -5.96 6.97 -7.32 -0.05 -6.01 16 29 C 0.32 3.43 7.64 -157.30 -1.20 2.23 16 30 C -0.09 -0.63 10.31 36.01 0.37 -0.26 16 31 N -0.51 -5.46 10.25 -7.00 -0.07 -5.53 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.16 1.52 7.74 -52.49 -0.41 1.11 16 36 H 0.07 0.95 7.56 -51.93 -0.39 0.55 16 37 H 0.08 0.95 7.05 -51.92 -0.37 0.59 16 38 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.54 7.40 -51.93 -0.38 1.16 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.04 0.65 6.80 -51.93 -0.35 0.30 16 44 H 0.38 9.50 7.31 -40.82 -0.30 9.20 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.08 1.08 6.15 -51.93 -0.32 0.76 16 47 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -31.36 393.13 -10.54 -41.90 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.91 Total: 7.49 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.42 Total: 0.75 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.20 Total: -64.11 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.36 -10.54 -41.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992832998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.818 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds