Wall clock time and date at job start Wed Apr 1 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38805 * 120.42632 * 2 1 4 4 C 1.39501 * 118.26265 * 180.27725 * 3 2 1 5 5 C 1.48451 * 120.55228 * 179.71263 * 4 3 2 6 6 O 1.21475 * 120.00117 * 359.73341 * 5 4 3 7 7 N 1.34780 * 119.99928 * 179.72330 * 5 4 3 8 8 C 1.47165 * 125.65109 * 359.97438 * 7 5 4 9 9 C 1.55337 * 106.96529 * 180.98186 * 8 7 5 10 10 H 1.09004 * 112.91338 * 214.96218 * 9 8 7 11 11 C 1.53006 * 106.41860 * 91.60239 * 9 8 7 12 12 C 1.52595 * 111.05298 * 197.21087 * 11 9 8 13 13 C 1.53328 * 108.40971 * 62.35154 * 12 11 9 14 14 C 1.52819 * 108.09330 * 295.87168 * 13 12 11 15 15 H 1.09003 * 108.96645 * 179.45783 * 14 13 12 16 16 N 1.46496 * 109.03143 * 298.33922 * 14 13 12 17 17 C 1.36945 * 119.99718 * 277.23752 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.50734 * 111.74388 * 58.92224 * 14 13 12 26 26 H 1.09003 * 109.26931 * 186.22900 * 25 14 13 27 27 C 1.47822 * 125.64470 * 180.02562 * 7 5 4 28 28 N 1.33111 * 118.90035 * 359.44769 * 4 3 2 29 29 C 1.31553 * 120.73358 * 0.27131 * 28 4 3 30 30 C 1.50703 * 119.03978 * 180.02562 * 29 28 4 31 31 N 1.31909 * 121.92137 * 0.02562 * 29 28 4 32 32 H 1.09000 * 109.47250 * 270.28259 * 1 2 3 33 33 H 1.09002 * 109.47275 * 30.28203 * 1 2 3 34 34 H 1.09001 * 109.47096 * 150.27791 * 1 2 3 35 35 H 1.07995 * 120.87529 * 0.02562 * 3 2 1 36 36 H 1.08999 * 109.96660 * 61.59919 * 8 7 5 37 37 H 1.09010 * 109.99065 * 300.37391 * 8 7 5 38 38 H 1.08997 * 109.16393 * 317.61348 * 11 9 8 39 39 H 1.08998 * 109.16647 * 76.85859 * 11 9 8 40 40 H 1.09006 * 109.67285 * 182.08417 * 12 11 9 41 41 H 1.08999 * 109.67590 * 302.61965 * 12 11 9 42 42 H 1.09001 * 109.73461 * 176.22291 * 13 12 11 43 43 H 1.08997 * 109.73577 * 55.52957 * 13 12 11 44 44 H 0.96996 * 120.00499 * 97.23482 * 16 14 13 45 45 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 46 46 H 1.08999 * 110.50586 * 84.68886 * 27 7 5 47 47 H 1.08992 * 110.51126 * 321.97673 * 27 7 5 48 48 H 1.09002 * 109.47174 * 90.00239 * 30 29 28 49 49 H 1.09001 * 109.47123 * 209.99729 * 30 29 28 50 50 H 1.09002 * 109.46839 * 329.99840 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0059 5 6 4.4063 2.3932 -0.0126 6 8 3.8494 3.4728 -0.0179 7 7 5.7525 2.3294 -0.0127 8 6 6.5527 1.0943 -0.0060 9 6 8.0459 1.5217 0.0165 10 1 8.6884 0.8495 -0.5523 11 6 8.4523 1.5958 1.4898 12 6 9.7386 2.3980 1.6639 13 6 9.4824 3.8331 1.1887 14 6 9.1762 3.7900 -0.3079 15 1 8.9819 4.8034 -0.6591 16 7 10.3396 3.2534 -1.0182 17 6 11.3854 4.0771 -1.3396 18 1 11.3521 5.1223 -1.0698 19 6 12.4880 3.5686 -2.0122 20 7 12.5283 2.2949 -2.3415 21 14 13.9141 4.6924 -2.4513 22 1 13.6816 5.2864 -3.7923 23 1 14.0196 5.7760 -1.4414 24 1 15.1750 3.9080 -2.4693 25 6 7.9767 2.9278 -0.6078 26 1 7.8611 2.8354 -1.6878 27 6 6.6699 3.4885 -0.0184 28 7 4.2028 -0.0445 -0.0001 29 6 3.4955 -1.1537 0.0057 30 6 4.2130 -2.4789 0.0128 31 7 2.1764 -1.1397 0.0055 32 1 -0.3634 0.0051 1.0276 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5095 35 1 1.6914 2.1442 0.0004 36 1 6.3458 0.5119 -0.9039 37 1 6.3208 0.5048 0.8812 38 1 7.6536 2.0728 2.0577 39 1 8.6073 0.5859 1.8695 40 1 10.0271 2.4054 2.7151 41 1 10.5338 1.9505 1.0677 42 1 10.3681 4.4432 1.3658 43 1 8.6322 4.2526 1.7266 44 1 10.3693 2.3148 -1.2608 45 1 13.2987 1.9397 -2.8119 46 1 6.8331 3.8513 0.9963 47 1 6.2762 4.2840 -0.6509 48 1 4.3859 -2.7930 1.0421 49 1 3.6034 -3.2249 -0.4971 50 1 5.1686 -2.3774 -0.5016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992832998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:41 Heat of formation + Delta-G solvation = 7.036590 kcal Electronic energy + Delta-G solvation = -30798.194953 eV Core-core repulsion = 26824.683443 eV Total energy + Delta-G solvation = -3973.511510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.51461 -41.55057 -39.85293 -37.11714 -35.73945 -35.04766 -34.53138 -33.13645 -31.81226 -30.94583 -30.16934 -29.21546 -28.01523 -26.73703 -25.63821 -24.00541 -23.26137 -23.17431 -22.31068 -20.87158 -19.49413 -19.22038 -19.10079 -17.82716 -17.30533 -17.15316 -16.68870 -16.46629 -16.43672 -15.93942 -15.46092 -15.38529 -15.26533 -15.10827 -14.75761 -14.26911 -14.18242 -14.11978 -14.08184 -13.80943 -13.34513 -13.25459 -13.20439 -13.09635 -12.93536 -12.79637 -12.67593 -12.60230 -12.42492 -12.20034 -12.03690 -11.95905 -11.83453 -11.62415 -11.59978 -11.30254 -11.15983 -10.86173 -10.66670 -10.51294 -10.34009 -9.76415 -8.93104 -7.89486 -5.15451 -0.66652 -0.18837 1.48602 1.49152 1.52319 1.57045 1.62187 2.58675 2.62276 2.65291 2.87348 3.19256 3.43568 3.48235 3.52384 3.69226 3.78366 3.87921 4.11516 4.17049 4.27449 4.30511 4.33925 4.38330 4.45317 4.53700 4.60262 4.66394 4.68034 4.70857 4.75281 4.79990 4.84412 4.85956 4.88174 4.90041 4.94588 5.09223 5.13536 5.16637 5.16857 5.29471 5.38688 5.42445 5.48547 5.55651 5.64010 5.73949 5.76497 6.25873 6.33455 6.72873 6.93729 7.40433 8.16749 8.41156 9.33826 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020088 B = 0.002488 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.529232 B =11250.986857 C =11661.133590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.181 3.819 3 C -0.182 4.182 4 C 0.124 3.876 5 C 0.576 3.424 6 O -0.560 6.560 7 N -0.591 5.591 8 C 0.131 3.869 9 C -0.088 4.088 10 H 0.090 0.910 11 C -0.098 4.098 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.188 3.812 15 H 0.036 0.964 16 N -0.727 5.727 17 C -0.229 4.229 18 H 0.071 0.929 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.964 3.036 22 H -0.292 1.292 23 H -0.272 1.272 24 H -0.298 1.298 25 C -0.088 4.088 26 H 0.060 0.940 27 C 0.120 3.880 28 N -0.504 5.504 29 C 0.310 3.690 30 C -0.083 4.083 31 N -0.518 5.518 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.167 0.833 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.375 0.625 45 H 0.249 0.751 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.487 -8.728 8.748 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.205 4.205 4 C -0.023 4.023 5 C 0.363 3.637 6 O -0.439 6.439 7 N -0.321 5.321 8 C 0.009 3.991 9 C -0.107 4.107 10 H 0.108 0.892 11 C -0.135 4.135 12 C -0.146 4.146 13 C -0.167 4.167 14 C 0.079 3.921 15 H 0.054 0.946 16 N -0.367 5.367 17 C -0.362 4.362 18 H 0.089 0.911 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.794 3.206 22 H -0.219 1.219 23 H -0.197 1.197 24 H -0.225 1.225 25 C -0.108 4.108 26 H 0.078 0.922 27 C -0.002 4.002 28 N -0.222 5.222 29 C 0.043 3.957 30 C -0.141 4.141 31 N -0.235 5.235 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.185 0.815 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.247 -8.824 8.732 26.354 hybrid contribution 0.949 1.251 -0.742 1.737 sum -22.298 -7.573 7.990 24.868 Atomic orbital electron populations 1.20951 0.84310 1.05544 1.05253 1.22437 0.99582 0.86761 0.87920 1.22929 0.93843 1.02351 1.01362 1.21433 0.92558 0.92040 0.96236 1.17714 0.81039 0.87478 0.77428 1.90764 1.71036 1.29537 1.52568 1.48487 1.04222 1.10142 1.69291 1.22460 0.88371 0.84932 1.03315 1.22234 0.95025 0.95889 0.97556 0.89154 1.21453 0.97052 1.00720 0.94301 1.21322 0.97709 0.95518 1.00039 1.22077 1.00309 0.97188 0.97167 1.19630 0.85659 0.94994 0.91794 0.94621 1.42506 1.17159 1.09319 1.67710 1.19550 0.95935 0.92534 1.28141 0.91059 1.25396 1.01141 0.97322 1.02724 1.69793 1.31311 1.13448 1.47257 0.85278 0.79315 0.78096 0.77922 1.21915 1.19737 1.22464 1.21530 0.93427 0.96039 0.99761 0.92178 1.22208 0.87652 0.88337 1.02032 1.68451 1.41334 0.98077 1.14327 1.23957 0.86814 0.95393 0.89516 1.20727 1.00210 0.87998 1.05211 1.68184 1.09943 1.30920 1.14428 0.87795 0.88078 0.89017 0.81529 0.90962 0.89152 0.91690 0.90690 0.91862 0.93657 0.93977 0.91077 0.79243 0.94257 0.89566 0.90872 0.88007 0.88369 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.22 71.24 0.73 -0.15 16 2 C 0.18 3.09 6.83 42.64 0.29 3.38 16 3 C -0.18 -3.69 9.41 22.71 0.21 -3.47 16 4 C 0.12 3.08 6.75 41.98 0.28 3.36 16 5 C 0.58 16.79 7.86 86.97 0.68 17.47 16 6 O -0.56 -18.89 16.70 -3.64 -0.06 -18.95 16 7 N -0.59 -16.31 3.34 -813.03 -2.71 -19.03 16 8 C 0.13 3.23 4.71 87.06 0.41 3.64 16 9 C -0.09 -2.44 3.28 -9.65 -0.03 -2.47 16 10 H 0.09 2.75 7.97 -2.39 -0.02 2.73 16 11 C -0.10 -2.49 4.62 30.46 0.14 -2.35 16 12 C -0.11 -3.37 5.85 30.57 0.18 -3.19 16 13 C -0.13 -4.24 5.44 30.64 0.17 -4.07 16 14 C 0.19 7.04 2.52 44.20 0.11 7.15 16 15 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 16 N -0.73 -34.72 4.18 -326.75 -1.36 -36.09 16 17 C -0.23 -12.39 9.89 84.03 0.83 -11.56 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 20 N -0.97 -57.96 13.06 21.65 0.28 -57.67 16 21 Si 0.96 45.99 29.55 68.60 2.03 48.02 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 C -0.09 -2.78 2.30 -10.88 -0.03 -2.80 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 C 0.12 3.41 5.85 86.44 0.51 3.92 16 28 N -0.50 -11.54 6.97 -177.08 -1.23 -12.77 16 29 C 0.31 6.14 7.64 138.79 1.06 7.20 16 30 C -0.08 -1.06 10.31 71.24 0.73 -0.32 16 31 N -0.52 -10.08 10.25 -176.05 -1.81 -11.88 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.54 8.10 -2.39 -0.02 0.52 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.17 2.98 7.74 -2.91 -0.02 2.96 16 36 H 0.07 1.82 7.56 -2.39 -0.02 1.80 16 37 H 0.09 2.04 7.05 -2.38 -0.02 2.02 16 38 H 0.06 1.54 7.15 -2.39 -0.02 1.52 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.04 1.75 7.40 -2.39 -0.02 1.73 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.98 6.80 -2.39 -0.02 1.97 16 44 H 0.37 19.18 7.31 -92.71 -0.68 18.50 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.09 2.29 6.15 -2.39 -0.01 2.28 16 47 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.37 393.13 2.15 -66.21 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.27 Total: 30.11 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.75 Total: 12.04 kcal Atomic # 7 Polarization: -130.60 SS G_CDS: -6.84 Total: -137.44 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.06 Total: -18.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -68.37 2.15 -66.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992832998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.250 kcal (2) G-P(sol) polarization free energy of solvation -68.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds