Wall clock time and date at job start Wed Apr 1 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31883 * 118.95267 * 2 1 4 4 C 1.32132 * 120.96445 * 180.27637 * 3 2 1 5 5 C 1.39972 * 118.92355 * 359.42941 * 4 3 2 6 6 C 1.47829 * 120.93728 * 180.25734 * 5 4 3 7 7 O 1.21550 * 119.99903 * 222.67683 * 6 5 4 8 8 N 1.34778 * 120.00110 * 42.68159 * 6 5 4 9 9 C 1.48658 * 125.78262 * 5.05189 * 8 6 5 10 10 C 1.53320 * 103.31688 * 155.51413 * 9 8 6 11 11 H 1.08996 * 111.58041 * 284.31314 * 10 9 8 12 12 C 1.51298 * 116.98878 * 156.45215 * 10 9 8 13 13 C 1.53818 * 107.43821 * 184.32842 * 12 10 9 14 14 C 1.52531 * 111.70217 * 57.28492 * 13 12 10 15 15 C 1.53839 * 111.66184 * 305.96133 * 14 13 12 16 16 H 1.08996 * 109.94450 * 297.80999 * 15 14 13 17 17 N 1.46502 * 110.00686 * 176.61835 * 15 14 13 18 18 C 1.36940 * 119.99911 * 87.36158 * 17 15 14 19 19 H 1.07996 * 120.00020 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99614 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00410 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99431 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47383 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47224 * 120.00502 * 22 20 18 25 25 H 1.48504 * 109.46976 * 240.00177 * 22 20 18 26 26 C 1.51444 * 107.04054 * 57.20223 * 15 14 13 27 27 H 1.08994 * 109.87912 * 54.69682 * 26 15 14 28 28 C 1.48236 * 125.78288 * 185.35457 * 8 6 5 29 29 C 1.39932 * 118.11870 * 0.28274 * 5 4 3 30 30 C 1.50700 * 120.53450 * 179.97438 * 29 5 4 31 31 N 1.31859 * 118.95012 * 179.69575 * 2 1 3 32 32 H 1.09006 * 109.47139 * 270.29985 * 1 2 3 33 33 H 1.08996 * 109.47393 * 30.30008 * 1 2 3 34 34 H 1.09006 * 109.47253 * 150.30357 * 1 2 3 35 35 H 1.08000 * 120.53801 * 179.71036 * 4 3 2 36 36 H 1.09001 * 110.62565 * 274.10022 * 9 8 6 37 37 H 1.09001 * 110.63062 * 37.12078 * 9 8 6 38 38 H 1.08994 * 109.94862 * 64.70425 * 12 10 9 39 39 H 1.09004 * 109.60596 * 303.75708 * 12 10 9 40 40 H 1.09005 * 109.03281 * 296.71781 * 13 12 10 41 41 H 1.08995 * 109.03426 * 177.85970 * 13 12 10 42 42 H 1.08997 * 109.03862 * 185.40109 * 14 13 12 43 43 H 1.08998 * 109.03679 * 66.52351 * 14 13 12 44 44 H 0.97000 * 120.00591 * 267.36489 * 17 15 14 45 45 H 0.96999 * 119.99853 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.17164 * 295.91811 * 28 8 6 47 47 H 1.08998 * 110.17748 * 57.64777 * 28 8 6 48 48 H 1.08997 * 109.47426 * 83.99614 * 30 29 5 49 49 H 1.08997 * 109.46941 * 204.00141 * 30 29 5 50 50 H 1.09003 * 109.47194 * 323.99710 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 -0.0055 5 6 4.1855 -0.0002 0.0009 6 6 5.6638 -0.0002 0.0009 7 8 6.2715 -0.7779 -0.7086 8 7 6.3377 0.8620 0.7876 9 6 5.7320 1.7903 1.7782 10 6 6.8710 2.0352 2.7750 11 1 7.0155 1.1810 3.4364 12 6 6.8120 3.3118 3.5849 13 6 8.1005 3.3868 4.4216 14 6 9.3468 3.3355 3.5439 15 6 9.3391 2.1070 2.6179 16 1 9.3444 1.1934 3.2123 17 7 10.5092 2.1361 1.7368 18 6 11.6928 1.5866 2.1520 19 1 11.7636 1.1315 3.1288 20 6 12.8013 1.6138 1.3168 21 7 12.7149 2.1680 0.1262 22 14 14.4156 0.8635 1.8830 23 1 14.2508 0.3080 3.2502 24 1 14.8098 -0.2238 0.9515 25 1 15.4697 1.9096 1.8969 26 6 8.0704 2.1802 1.7942 27 1 8.0164 3.1403 1.2812 28 6 7.8080 1.0499 0.8071 29 6 3.4660 -1.2003 0.0067 30 6 4.1856 -2.5244 0.0131 31 7 2.1453 -1.1538 0.0061 32 1 -0.3634 0.0054 1.0277 33 1 -0.3634 0.8872 -0.5185 34 1 -0.3634 -0.8927 -0.5091 35 1 3.9817 2.1493 -0.0101 36 1 5.4316 2.7216 1.2981 37 1 4.8823 1.3213 2.2744 38 1 5.9425 3.2956 4.2419 39 1 6.7544 4.1686 2.9134 40 1 8.1214 2.5485 5.1180 41 1 8.1027 4.3180 4.9882 42 1 10.2296 3.2944 4.1819 43 1 9.3908 4.2390 2.9357 44 1 10.4456 2.5447 0.8593 45 1 13.4896 2.1873 -0.4571 46 1 8.2993 0.1365 1.1424 47 1 8.1650 1.3256 -0.1852 48 1 4.4535 -2.7874 1.0364 49 1 3.5342 -3.2939 -0.4011 50 1 5.0895 -2.4496 -0.5913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992849929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:52 Heat of formation + Delta-G solvation = 20.310887 kcal Electronic energy + Delta-G solvation = -30688.429149 eV Core-core repulsion = 26715.493256 eV Total energy + Delta-G solvation = -3972.935893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.64398 -40.31686 -38.63765 -35.74603 -34.71833 -34.04449 -33.80638 -31.58468 -30.79794 -29.53304 -29.18198 -28.42209 -26.83879 -25.07988 -24.03489 -23.28528 -22.60850 -21.03430 -20.50811 -19.97274 -19.63028 -18.22433 -17.43212 -16.94594 -16.34520 -16.27433 -15.58949 -15.35955 -15.00865 -14.40893 -14.27914 -14.17531 -13.92268 -13.73062 -13.64310 -13.33236 -13.17180 -12.96519 -12.77604 -12.71314 -12.63768 -12.56197 -12.32101 -12.13855 -12.03954 -11.77141 -11.51236 -11.03025 -10.93749 -10.87640 -10.85396 -10.58522 -10.31537 -10.24887 -10.17281 -9.91263 -9.82138 -9.64618 -9.59567 -9.50772 -8.92302 -8.67747 -6.99930 -5.79206 -3.08416 0.23366 0.71445 2.53741 2.77831 3.37054 3.41978 3.47748 3.49963 3.52566 3.70080 4.07162 4.15197 4.38094 4.54718 4.62129 4.74486 4.75533 4.91104 5.04295 5.15029 5.15151 5.22926 5.28647 5.29802 5.37858 5.40823 5.45362 5.51751 5.53974 5.59341 5.64112 5.75490 5.81194 5.83605 5.88610 5.99299 6.02001 6.07141 6.09772 6.17360 6.26660 6.36355 6.46539 6.53247 6.58135 6.60336 6.81791 7.03184 7.40064 7.68466 7.71157 8.00433 8.38716 9.50550 10.06263 10.40758 11.43216 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002726 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.711890 B =10269.102302 C =11501.634742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.333 3.667 3 N -0.525 5.525 4 C 0.188 3.812 5 C -0.241 4.241 6 C 0.583 3.417 7 O -0.524 6.524 8 N -0.613 5.613 9 C 0.107 3.893 10 C -0.105 4.105 11 H 0.086 0.914 12 C -0.101 4.101 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.196 3.804 16 H 0.052 0.948 17 N -0.722 5.722 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.103 4.103 27 H 0.079 0.921 28 C 0.127 3.873 29 C 0.233 3.767 30 C -0.126 4.126 31 N -0.523 5.523 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.174 0.826 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.839 -0.752 4.271 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 N -0.240 5.240 4 C 0.021 3.979 5 C -0.248 4.248 6 C 0.369 3.631 7 O -0.401 6.401 8 N -0.346 5.346 9 C -0.016 4.016 10 C -0.125 4.125 11 H 0.105 0.895 12 C -0.139 4.139 13 C -0.152 4.152 14 C -0.179 4.179 15 C 0.086 3.914 16 H 0.070 0.930 17 N -0.362 5.362 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.123 4.123 27 H 0.097 0.903 28 C 0.006 3.994 29 C 0.086 3.914 30 C -0.183 4.183 31 N -0.238 5.238 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.377 -1.333 3.911 24.725 hybrid contribution 1.915 0.008 0.012 1.915 sum -22.462 -1.325 3.924 22.841 Atomic orbital electron populations 1.20626 0.85337 1.04434 1.04127 1.23493 0.98434 0.83382 0.88032 1.68314 1.09550 1.30033 1.16093 1.23527 0.89425 0.97757 0.87158 1.21559 0.96089 0.96484 1.10713 1.17356 0.85429 0.80327 0.79969 1.90777 1.69086 1.38685 1.41530 1.49152 1.08870 1.38199 1.38411 1.22253 0.96498 0.93154 0.89680 1.22056 0.94482 0.99732 0.96230 0.89547 1.21254 0.98015 0.96246 0.98357 1.21533 0.94461 1.01187 0.98067 1.22328 0.96226 1.00705 0.98652 1.19922 0.85198 0.95593 0.90716 0.93040 1.42399 1.06807 1.69917 1.17053 1.19249 0.87992 1.29971 0.99826 0.91161 1.24731 0.98154 1.01462 0.96419 1.69657 1.29845 1.49640 1.08742 0.86165 0.84147 0.78457 0.77687 1.20583 1.21860 1.21924 1.22192 0.96501 0.98338 0.95264 0.90259 1.21682 0.77399 0.99730 1.00608 1.21889 0.88829 0.95434 0.85203 1.21141 1.01595 0.91086 1.04503 1.68240 1.09069 1.30130 1.16355 0.89276 0.89338 0.89390 0.80938 0.90821 0.90992 0.92092 0.91595 0.92566 0.92605 0.91950 0.92673 0.78208 0.93533 0.90390 0.90503 0.89500 0.89727 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.31 36.01 0.37 -0.21 16 2 C 0.33 3.54 7.64 -157.06 -1.20 2.34 16 3 N -0.53 -5.82 10.32 -10.39 -0.11 -5.93 16 4 C 0.19 2.03 9.64 -16.77 -0.16 1.87 16 5 C -0.24 -2.99 5.29 -104.69 -0.55 -3.55 16 6 C 0.58 8.47 7.12 -12.34 -0.09 8.38 16 7 O -0.52 -9.35 14.98 5.32 0.08 -9.27 16 8 N -0.61 -8.21 3.38 -171.82 -0.58 -8.79 16 9 C 0.11 1.09 5.01 -2.68 -0.01 1.07 16 10 C -0.11 -1.18 2.50 -89.92 -0.23 -1.41 16 11 H 0.09 1.02 8.04 -51.93 -0.42 0.61 16 12 C -0.10 -1.01 5.69 -27.16 -0.15 -1.17 16 13 C -0.11 -1.36 5.85 -26.55 -0.16 -1.51 16 14 C -0.14 -2.20 5.47 -26.53 -0.15 -2.34 16 15 C 0.20 3.50 2.53 -68.28 -0.17 3.33 16 16 H 0.05 0.97 8.00 -51.93 -0.42 0.55 16 17 N -0.72 -16.87 5.05 -53.77 -0.27 -17.14 16 18 C -0.24 -6.36 9.95 -15.06 -0.15 -6.51 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 22 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C -0.10 -1.50 1.79 -90.35 -0.16 -1.66 16 27 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 28 C 0.13 2.01 6.51 -3.43 -0.02 1.98 16 29 C 0.23 2.86 6.86 -81.82 -0.56 2.30 16 30 C -0.13 -1.37 9.71 36.01 0.35 -1.03 16 31 N -0.52 -6.18 10.26 -6.67 -0.07 -6.25 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.17 1.50 6.54 -52.49 -0.34 1.16 16 36 H 0.07 0.63 7.25 -51.93 -0.38 0.26 16 37 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.38 9.66 7.81 -40.82 -0.32 9.35 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 47 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.11 1.41 5.68 -51.93 -0.30 1.12 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -31.81 395.89 -10.42 -42.23 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.00 Total: 7.45 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.14 Total: 1.48 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.30 Total: -64.95 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.81 -10.42 -42.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.541 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds