Wall clock time and date at job start Wed Apr 1 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31883 * 118.95267 * 2 1 4 4 C 1.32132 * 120.96445 * 180.27637 * 3 2 1 5 5 C 1.39972 * 118.92355 * 359.42941 * 4 3 2 6 6 C 1.47829 * 120.93728 * 180.25734 * 5 4 3 7 7 O 1.21550 * 119.99903 * 222.67683 * 6 5 4 8 8 N 1.34778 * 120.00110 * 42.68159 * 6 5 4 9 9 C 1.48658 * 125.78262 * 5.05189 * 8 6 5 10 10 C 1.53320 * 103.31688 * 155.51413 * 9 8 6 11 11 H 1.08996 * 111.58041 * 284.31314 * 10 9 8 12 12 C 1.51298 * 116.98878 * 156.45215 * 10 9 8 13 13 C 1.53818 * 107.43821 * 184.32842 * 12 10 9 14 14 C 1.52531 * 111.70217 * 57.28492 * 13 12 10 15 15 C 1.53839 * 111.66184 * 305.96133 * 14 13 12 16 16 H 1.08996 * 109.94450 * 297.80999 * 15 14 13 17 17 N 1.46502 * 110.00686 * 176.61835 * 15 14 13 18 18 C 1.36940 * 119.99911 * 87.36158 * 17 15 14 19 19 H 1.07996 * 120.00020 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99614 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00410 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99431 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47383 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47224 * 120.00502 * 22 20 18 25 25 H 1.48504 * 109.46976 * 240.00177 * 22 20 18 26 26 C 1.51444 * 107.04054 * 57.20223 * 15 14 13 27 27 H 1.08994 * 109.87912 * 54.69682 * 26 15 14 28 28 C 1.48236 * 125.78288 * 185.35457 * 8 6 5 29 29 C 1.39932 * 118.11870 * 0.28274 * 5 4 3 30 30 C 1.50700 * 120.53450 * 179.97438 * 29 5 4 31 31 N 1.31859 * 118.95012 * 179.69575 * 2 1 3 32 32 H 1.09006 * 109.47139 * 270.29985 * 1 2 3 33 33 H 1.08996 * 109.47393 * 30.30008 * 1 2 3 34 34 H 1.09006 * 109.47253 * 150.30357 * 1 2 3 35 35 H 1.08000 * 120.53801 * 179.71036 * 4 3 2 36 36 H 1.09001 * 110.62565 * 274.10022 * 9 8 6 37 37 H 1.09001 * 110.63062 * 37.12078 * 9 8 6 38 38 H 1.08994 * 109.94862 * 64.70425 * 12 10 9 39 39 H 1.09004 * 109.60596 * 303.75708 * 12 10 9 40 40 H 1.09005 * 109.03281 * 296.71781 * 13 12 10 41 41 H 1.08995 * 109.03426 * 177.85970 * 13 12 10 42 42 H 1.08997 * 109.03862 * 185.40109 * 14 13 12 43 43 H 1.08998 * 109.03679 * 66.52351 * 14 13 12 44 44 H 0.97000 * 120.00591 * 267.36489 * 17 15 14 45 45 H 0.96999 * 119.99853 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.17164 * 295.91811 * 28 8 6 47 47 H 1.08998 * 110.17748 * 57.64777 * 28 8 6 48 48 H 1.08997 * 109.47426 * 83.99614 * 30 29 5 49 49 H 1.08997 * 109.46941 * 204.00141 * 30 29 5 50 50 H 1.09003 * 109.47194 * 323.99710 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 -0.0055 5 6 4.1855 -0.0002 0.0009 6 6 5.6638 -0.0002 0.0009 7 8 6.2715 -0.7779 -0.7086 8 7 6.3377 0.8620 0.7876 9 6 5.7320 1.7903 1.7782 10 6 6.8710 2.0352 2.7750 11 1 7.0155 1.1810 3.4364 12 6 6.8120 3.3118 3.5849 13 6 8.1005 3.3868 4.4216 14 6 9.3468 3.3355 3.5439 15 6 9.3391 2.1070 2.6179 16 1 9.3444 1.1934 3.2123 17 7 10.5092 2.1361 1.7368 18 6 11.6928 1.5866 2.1520 19 1 11.7636 1.1315 3.1288 20 6 12.8013 1.6138 1.3168 21 7 12.7149 2.1680 0.1262 22 14 14.4156 0.8635 1.8830 23 1 14.2508 0.3080 3.2502 24 1 14.8098 -0.2238 0.9515 25 1 15.4697 1.9096 1.8969 26 6 8.0704 2.1802 1.7942 27 1 8.0164 3.1403 1.2812 28 6 7.8080 1.0499 0.8071 29 6 3.4660 -1.2003 0.0067 30 6 4.1856 -2.5244 0.0131 31 7 2.1453 -1.1538 0.0061 32 1 -0.3634 0.0054 1.0277 33 1 -0.3634 0.8872 -0.5185 34 1 -0.3634 -0.8927 -0.5091 35 1 3.9817 2.1493 -0.0101 36 1 5.4316 2.7216 1.2981 37 1 4.8823 1.3213 2.2744 38 1 5.9425 3.2956 4.2419 39 1 6.7544 4.1686 2.9134 40 1 8.1214 2.5485 5.1180 41 1 8.1027 4.3180 4.9882 42 1 10.2296 3.2944 4.1819 43 1 9.3908 4.2390 2.9357 44 1 10.4456 2.5447 0.8593 45 1 13.4896 2.1873 -0.4571 46 1 8.2993 0.1365 1.1424 47 1 8.1650 1.3256 -0.1852 48 1 4.4535 -2.7874 1.0364 49 1 3.5342 -3.2939 -0.4011 50 1 5.0895 -2.4496 -0.5913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992849929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:51 Heat of formation + Delta-G solvation = 0.397397 kcal Electronic energy + Delta-G solvation = -30689.292663 eV Core-core repulsion = 26715.493256 eV Total energy + Delta-G solvation = -3973.799407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.54592 -41.40925 -39.81091 -37.06148 -35.71999 -35.50072 -34.65320 -33.29161 -31.90353 -30.62556 -30.23224 -29.45883 -28.03681 -26.30768 -25.35255 -24.61757 -23.48898 -22.15883 -21.68279 -21.09549 -20.82866 -19.18976 -19.10510 -18.19781 -17.45100 -17.10581 -16.73059 -16.53949 -16.37067 -15.75907 -15.59081 -15.33409 -15.18573 -14.77387 -14.74943 -14.40622 -14.23317 -14.12111 -13.89024 -13.64236 -13.49234 -13.39664 -13.30813 -13.21108 -13.11915 -12.88185 -12.87160 -12.72578 -12.58614 -12.17174 -12.00399 -11.89067 -11.74750 -11.70700 -11.50586 -11.26873 -11.04021 -10.89587 -10.84281 -10.52570 -10.45726 -9.82545 -8.98145 -7.93640 -5.20756 -0.64389 -0.14721 1.45244 1.45355 1.46412 1.55438 1.68459 2.50590 2.55521 2.77654 2.89940 3.16399 3.22825 3.37536 3.40430 3.64939 3.70684 3.79771 4.05836 4.08740 4.18335 4.26437 4.30711 4.40307 4.44693 4.50267 4.51072 4.59653 4.62439 4.64409 4.68386 4.72209 4.73012 4.79522 4.84392 4.86892 4.90221 5.06633 5.10398 5.11091 5.28929 5.32302 5.33550 5.37468 5.42880 5.52437 5.53341 5.70602 5.74254 6.28951 6.31781 6.86589 6.88888 7.35352 8.12259 8.33990 9.29890 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002726 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.711890 B =10269.102302 C =11501.634742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.328 3.672 3 N -0.530 5.530 4 C 0.198 3.802 5 C -0.255 4.255 6 C 0.583 3.417 7 O -0.568 6.568 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.091 4.091 11 H 0.082 0.918 12 C -0.093 4.093 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.191 3.809 16 H 0.040 0.960 17 N -0.734 5.734 18 C -0.231 4.231 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.298 1.298 25 H -0.294 1.294 26 C -0.098 4.098 27 H 0.084 0.916 28 C 0.133 3.867 29 C 0.225 3.775 30 C -0.122 4.122 31 N -0.533 5.533 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.196 0.804 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.169 0.302 6.303 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.245 5.245 4 C 0.032 3.968 5 C -0.262 4.262 6 C 0.371 3.629 7 O -0.448 6.448 8 N -0.341 5.341 9 C -0.013 4.013 10 C -0.110 4.110 11 H 0.100 0.900 12 C -0.131 4.131 13 C -0.147 4.147 14 C -0.169 4.169 15 C 0.082 3.918 16 H 0.058 0.942 17 N -0.373 5.373 18 C -0.363 4.363 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.226 1.226 25 H -0.221 1.221 26 C -0.118 4.118 27 H 0.102 0.898 28 C 0.011 3.989 29 C 0.078 3.922 30 C -0.179 4.179 31 N -0.249 5.249 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.772 -0.266 6.019 28.418 hybrid contribution 2.855 -0.349 -0.590 2.937 sum -24.916 -0.615 5.429 25.508 Atomic orbital electron populations 1.20796 0.82593 1.05452 1.05500 1.24303 1.00096 0.82952 0.86314 1.68454 1.09371 1.30091 1.16563 1.23853 0.89472 0.97882 0.85633 1.21344 0.94370 0.97480 1.13034 1.17714 0.86378 0.79586 0.79229 1.90757 1.70206 1.40500 1.43377 1.49146 1.07682 1.38509 1.38800 1.22509 0.96325 0.93719 0.88725 1.22051 0.92664 1.00713 0.95597 0.89973 1.21251 0.97968 0.95368 0.98479 1.21482 0.93139 1.02436 0.97612 1.22136 0.97858 0.98719 0.98170 1.20153 0.84741 0.96091 0.90813 0.94180 1.42602 1.07679 1.69641 1.17418 1.19596 0.89031 1.28202 0.99441 0.90876 1.25469 1.01386 1.03150 0.96842 1.69805 1.30265 1.51959 1.09968 0.85194 0.80410 0.77286 0.77649 1.19058 1.22555 1.22146 1.22008 0.96432 0.97673 0.95679 0.89803 1.21379 0.79205 0.98806 0.99490 1.22066 0.89351 0.95738 0.85005 1.21081 1.00823 0.91330 1.04699 1.68335 1.08586 1.30826 1.17154 0.87496 0.88112 0.88562 0.78733 0.88021 0.88854 0.88718 0.90597 0.92106 0.90725 0.94387 0.93445 0.79604 0.94240 0.93466 0.93148 0.88610 0.88423 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.31 71.24 0.73 -0.13 16 2 C 0.33 6.13 7.64 138.70 1.06 7.19 16 3 N -0.53 -10.19 10.32 -186.79 -1.93 -12.11 16 4 C 0.20 3.78 9.64 85.07 0.82 4.60 16 5 C -0.25 -6.04 5.29 -19.91 -0.11 -6.14 16 6 C 0.58 17.06 7.12 86.78 0.62 17.68 16 7 O -0.57 -21.36 14.98 -3.87 -0.06 -21.42 16 8 N -0.61 -16.01 3.38 -815.81 -2.76 -18.77 16 9 C 0.11 1.86 5.01 86.07 0.43 2.29 16 10 C -0.09 -1.79 2.50 -10.34 -0.03 -1.81 16 11 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 12 C -0.09 -1.45 5.69 30.31 0.17 -1.28 16 13 C -0.11 -2.24 5.85 30.71 0.18 -2.06 16 14 C -0.13 -3.99 5.47 30.72 0.17 -3.82 16 15 C 0.19 6.90 2.53 44.76 0.11 7.01 16 16 H 0.04 1.54 8.00 -2.39 -0.02 1.52 16 17 N -0.73 -35.64 5.05 -324.01 -1.64 -37.28 16 18 C -0.23 -12.60 9.95 84.03 0.84 -11.77 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 21 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 22 Si 0.96 46.63 29.55 68.60 2.03 48.66 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 C -0.10 -2.82 1.79 -10.62 -0.02 -2.84 16 27 H 0.08 2.38 7.95 -2.39 -0.02 2.36 16 28 C 0.13 4.41 6.51 85.83 0.56 4.97 16 29 C 0.23 5.33 6.86 42.92 0.29 5.62 16 30 C -0.12 -2.67 9.71 71.24 0.69 -1.98 16 31 N -0.53 -11.67 10.26 -175.03 -1.79 -13.46 16 32 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.20 2.68 6.54 -2.91 -0.02 2.66 16 36 H 0.10 1.27 7.25 -2.39 -0.02 1.25 16 37 H 0.09 1.31 7.53 -2.39 -0.02 1.30 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.11 8.00 -2.39 -0.02 1.09 16 40 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.37 19.64 7.81 -92.71 -0.72 18.92 16 45 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 48 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 50 H 0.09 2.38 5.68 -2.39 -0.01 2.37 16 Total: -1.00 -73.02 395.89 1.36 -71.66 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.23 Total: 28.44 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.00 Total: 13.59 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -7.83 Total: -140.93 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.02 1.36 -71.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.056 kcal (2) G-P(sol) polarization free energy of solvation -73.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds