Wall clock time and date at job start Wed Apr 1 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31887 * 118.95552 * 2 1 4 4 C 1.32135 * 120.96787 * 179.97438 * 3 2 1 5 5 C 1.39970 * 118.92259 * 0.02562 * 4 3 2 6 6 C 1.47832 * 120.93718 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00162 * 219.55759 * 6 5 4 8 8 N 1.34777 * 119.99966 * 39.56366 * 6 5 4 9 9 C 1.48661 * 125.78639 * 355.32169 * 8 6 5 10 10 C 1.53061 * 103.44537 * 155.62362 * 9 8 6 11 11 H 1.09000 * 110.55197 * 284.34648 * 10 9 8 12 12 C 1.51615 * 116.68147 * 155.89542 * 10 9 8 13 13 C 1.53814 * 107.02229 * 183.73492 * 12 10 9 14 14 C 1.52525 * 111.70076 * 57.53971 * 13 12 10 15 15 C 1.53844 * 111.65888 * 305.95368 * 14 13 12 16 16 H 1.09006 * 109.93775 * 176.58482 * 15 14 13 17 17 N 1.46507 * 109.93991 * 297.81462 * 15 14 13 18 18 C 1.36933 * 119.99881 * 207.54792 * 17 15 14 19 19 H 1.08002 * 120.00072 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99762 * 180.02562 * 18 17 15 21 21 N 1.31625 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00212 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46867 * 59.99913 * 22 20 18 24 24 H 1.48493 * 109.47251 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46811 * 300.00224 * 22 20 18 26 26 C 1.51436 * 107.04299 * 57.19994 * 15 14 13 27 27 H 1.09000 * 110.22129 * 54.38690 * 26 15 14 28 28 C 1.48245 * 125.78543 * 175.32749 * 8 6 5 29 29 C 1.39927 * 118.12272 * 0.26117 * 5 4 3 30 30 C 1.50701 * 120.54048 * 179.72882 * 29 5 4 31 31 N 1.31859 * 118.95388 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46953 * 89.99324 * 1 2 3 33 33 H 1.08996 * 109.47351 * 209.99374 * 1 2 3 34 34 H 1.08998 * 109.47155 * 330.00075 * 1 2 3 35 35 H 1.07994 * 120.53843 * 179.97438 * 4 3 2 36 36 H 1.09003 * 110.62339 * 274.11305 * 9 8 6 37 37 H 1.09000 * 110.62325 * 37.13252 * 9 8 6 38 38 H 1.08998 * 109.94619 * 303.11605 * 12 10 9 39 39 H 1.09007 * 109.94084 * 64.26966 * 12 10 9 40 40 H 1.09000 * 109.03354 * 178.11380 * 13 12 10 41 41 H 1.09005 * 109.03046 * 297.03932 * 13 12 10 42 42 H 1.08999 * 109.04071 * 66.51352 * 14 13 12 43 43 H 1.09000 * 109.04077 * 185.46896 * 14 13 12 44 44 H 0.96997 * 119.99669 * 27.55772 * 17 15 14 45 45 H 0.97003 * 119.99905 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.16537 * 295.91402 * 28 8 6 47 47 H 1.09005 * 110.17037 * 57.63555 * 28 8 6 48 48 H 1.09002 * 109.46656 * 83.06294 * 30 29 5 49 49 H 1.08993 * 109.47196 * 203.06302 * 30 29 5 50 50 H 1.09005 * 109.46917 * 323.06807 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2716 -0.8119 -0.6699 8 7 6.3377 0.8995 0.7439 9 6 5.7315 2.0059 1.5304 10 6 6.7774 2.2885 2.6116 11 1 6.7511 1.5165 3.3806 12 6 6.7656 3.6754 3.2242 13 6 7.9515 3.7461 4.2013 14 6 9.2753 3.4509 3.5037 15 6 9.2346 2.1087 2.7529 16 1 10.1708 1.9544 2.2164 17 7 9.0136 1.0130 3.7000 18 6 9.4803 -0.2426 3.4154 19 1 10.0116 -0.4249 2.4930 20 6 9.2704 -1.2808 4.3125 21 7 8.6224 -1.0586 5.4364 22 14 9.9076 -2.9935 3.9247 23 1 11.3834 -2.9485 3.7669 24 1 9.5557 -3.9155 5.0342 25 1 9.2895 -3.4778 2.6643 26 6 8.0834 2.1836 1.7720 27 1 8.1871 3.0625 1.1357 28 6 7.8092 0.9538 0.9159 29 6 3.4660 -1.2003 -0.0057 30 6 4.1855 -2.5245 -0.0121 31 7 2.1453 -1.1538 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5138 35 1 3.9817 2.1492 0.0001 36 1 5.5803 2.8846 0.9034 37 1 4.7911 1.6870 1.9798 38 1 6.8814 4.4275 2.4439 39 1 5.8303 3.8371 3.7603 40 1 7.9940 4.7444 4.6370 41 1 7.8000 3.0172 4.9975 42 1 9.4888 4.2495 2.7932 43 1 10.0700 3.4163 4.2490 44 1 8.5366 1.1769 4.5285 45 1 8.4761 -1.7841 6.0635 46 1 8.1615 0.0561 1.4238 47 1 8.2975 1.0528 -0.0536 48 1 4.4678 -2.7895 1.0068 49 1 3.5284 -3.2931 -0.4187 50 1 5.0810 -2.4484 -0.6291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992849937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:54 Heat of formation + Delta-G solvation = 7.167961 kcal Electronic energy + Delta-G solvation = -31628.282832 eV Core-core repulsion = 27654.777019 eV Total energy + Delta-G solvation = -3973.505813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.56274 -41.40085 -39.81802 -37.00482 -35.62516 -35.34557 -34.67533 -33.07603 -31.83830 -30.67976 -30.26676 -29.46286 -28.20314 -26.23807 -25.31423 -24.66370 -23.49986 -22.20050 -22.04118 -20.94419 -20.12659 -19.19631 -19.11598 -18.16743 -17.42488 -17.12135 -16.61482 -16.51979 -16.27233 -15.90368 -15.60891 -15.43165 -15.24604 -14.85999 -14.46540 -14.40443 -14.18350 -14.16549 -13.79013 -13.65516 -13.41834 -13.32506 -13.21252 -13.20093 -13.10737 -12.84883 -12.75857 -12.67858 -12.58372 -12.45539 -12.17689 -11.82307 -11.75722 -11.60414 -11.33216 -11.11309 -10.96526 -10.88141 -10.61041 -10.51475 -10.49225 -9.70541 -8.93885 -7.92613 -5.15634 -0.66088 -0.18083 1.41791 1.44275 1.46492 1.48341 1.82195 2.50388 2.55173 2.75424 2.86396 3.20397 3.22314 3.40474 3.52659 3.71670 3.82261 3.85333 4.04659 4.13814 4.25991 4.29996 4.35580 4.38728 4.44879 4.45476 4.56018 4.64353 4.66475 4.69293 4.69687 4.73744 4.77263 4.86928 4.88041 4.96044 5.04538 5.09883 5.12256 5.20017 5.24253 5.30803 5.40669 5.46945 5.51122 5.58295 5.59943 5.71132 5.77322 6.30899 6.38858 6.84240 6.92318 7.38998 8.18267 8.39647 9.30285 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004093 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.349401 B = 6840.130164 C = 8463.510136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.326 3.674 3 N -0.529 5.529 4 C 0.196 3.804 5 C -0.258 4.258 6 C 0.578 3.422 7 O -0.571 6.571 8 N -0.605 5.605 9 C 0.105 3.895 10 C -0.097 4.097 11 H 0.056 0.944 12 C -0.088 4.088 13 C -0.113 4.113 14 C -0.114 4.114 15 C 0.178 3.822 16 H 0.045 0.955 17 N -0.722 5.722 18 C -0.217 4.217 19 H 0.069 0.931 20 C -0.069 4.069 21 N -0.964 5.964 22 Si 0.947 3.053 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.291 1.291 26 C -0.110 4.110 27 H 0.104 0.896 28 C 0.118 3.882 29 C 0.222 3.778 30 C -0.123 4.123 31 N -0.535 5.535 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.376 0.624 45 H 0.246 0.754 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 12.656 -9.919 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 N -0.243 5.243 4 C 0.029 3.971 5 C -0.265 4.265 6 C 0.366 3.634 7 O -0.452 6.452 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.117 4.117 11 H 0.075 0.925 12 C -0.126 4.126 13 C -0.151 4.151 14 C -0.152 4.152 15 C 0.069 3.931 16 H 0.063 0.937 17 N -0.362 5.362 18 C -0.350 4.350 19 H 0.086 0.914 20 C -0.261 4.261 21 N -0.616 5.616 22 Si 0.778 3.222 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.218 1.218 26 C -0.131 4.131 27 H 0.122 0.878 28 C -0.004 4.004 29 C 0.076 3.924 30 C -0.180 4.180 31 N -0.251 5.251 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.218 0.782 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.209 0.791 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.119 0.881 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.706 12.040 -10.379 20.989 hybrid contribution 1.539 -1.825 0.501 2.440 sum -12.167 10.215 -9.878 18.707 Atomic orbital electron populations 1.20796 0.82367 1.05571 1.05478 1.24356 1.00204 0.82942 0.86430 1.68444 1.09337 1.29978 1.16576 1.23996 0.89542 0.97937 0.85627 1.21446 0.94938 0.97514 1.12622 1.17677 0.86308 0.80138 0.79248 1.90698 1.70154 1.40169 1.44130 1.49121 1.08391 1.29847 1.46264 1.22531 0.96633 0.89371 0.93104 1.21972 0.93750 0.99455 0.96498 0.92521 1.21265 0.98264 0.94011 0.99046 1.21441 0.94338 1.01311 0.97965 1.21733 0.97591 0.96093 0.99758 1.20184 0.94781 0.88193 0.89975 0.93662 1.42554 1.66989 1.04983 1.21711 1.19402 1.26688 0.87268 1.01603 0.91358 1.25222 1.02900 1.00633 0.97356 1.69758 1.48570 1.31884 1.11350 0.85593 0.78428 0.81922 0.76217 1.20416 1.22405 1.21841 1.22506 0.98043 0.96209 0.96333 0.87843 1.21720 0.78883 1.00748 0.99048 1.22011 0.89472 0.95754 0.85199 1.21074 1.01102 0.91681 1.04102 1.68315 1.08485 1.31059 1.17230 0.87520 0.88625 0.87802 0.78170 0.86932 0.90993 0.88753 0.90814 0.90060 0.94913 0.89119 0.93280 0.79104 0.94473 0.92901 0.91913 0.90122 0.88148 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.31 71.23 0.73 -0.45 16 2 C 0.33 7.66 7.64 138.70 1.06 8.72 16 3 N -0.53 -12.46 10.32 -186.79 -1.93 -14.38 16 4 C 0.20 4.64 9.26 85.07 0.79 5.42 16 5 C -0.26 -7.70 5.47 -19.91 -0.11 -7.81 16 6 C 0.58 20.23 7.24 86.78 0.63 20.86 16 7 O -0.57 -23.79 14.81 -3.89 -0.06 -23.85 16 8 N -0.61 -19.35 3.38 -816.27 -2.76 -22.11 16 9 C 0.10 2.49 4.83 85.98 0.42 2.90 16 10 C -0.10 -2.67 2.38 -10.33 -0.02 -2.69 16 11 H 0.06 2.18 6.78 -2.39 -0.02 2.16 16 12 C -0.09 -1.77 5.71 30.41 0.17 -1.60 16 13 C -0.11 -2.72 5.59 30.71 0.17 -2.55 16 14 C -0.11 -2.99 5.51 30.72 0.17 -2.82 16 15 C 0.18 6.04 3.00 44.76 0.13 6.18 16 16 H 0.05 1.62 8.07 -2.38 -0.02 1.60 16 17 N -0.72 -32.99 3.92 -324.00 -1.27 -34.26 16 18 C -0.22 -11.54 8.11 84.03 0.68 -10.85 16 19 H 0.07 3.59 7.60 -2.91 -0.02 3.57 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.96 -58.02 13.06 21.65 0.28 -57.74 16 22 Si 0.95 47.31 29.55 68.60 2.03 49.34 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 C -0.11 -3.16 2.13 -10.63 -0.02 -3.18 16 27 H 0.10 2.27 7.94 -2.39 -0.02 2.25 16 28 C 0.12 4.14 6.57 85.82 0.56 4.70 16 29 C 0.22 6.79 6.86 42.92 0.29 7.09 16 30 C -0.12 -3.66 9.67 71.24 0.69 -2.98 16 31 N -0.53 -14.88 10.26 -175.03 -1.79 -16.68 16 32 H 0.11 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.20 3.42 5.94 -2.91 -0.02 3.40 16 36 H 0.11 1.75 7.40 -2.39 -0.02 1.73 16 37 H 0.07 1.71 6.78 -2.39 -0.02 1.70 16 38 H 0.09 1.34 7.99 -2.39 -0.02 1.32 16 39 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.03 1.02 7.03 -2.38 -0.02 1.00 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.38 18.67 6.10 -92.71 -0.57 18.11 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.05 2.40 5.82 -2.39 -0.01 2.39 16 47 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.09 3.17 5.64 -2.38 -0.01 3.16 16 Total: -1.00 -71.94 385.19 1.71 -70.22 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.40 Total: 31.94 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.81 Total: 17.52 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -7.47 Total: -145.17 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -71.94 1.71 -70.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.392 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds