Wall clock time and date at job start Wed Apr 1 2020 03:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31880 * 118.95319 * 2 1 4 4 C 1.32134 * 120.96763 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92467 * 0.02562 * 4 3 2 6 6 C 1.47826 * 120.94077 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00047 * 136.03505 * 6 5 4 8 8 N 1.34773 * 120.00013 * 316.03799 * 6 5 4 9 9 C 1.47168 * 125.64981 * 354.75957 * 8 6 5 10 10 C 1.55349 * 106.96583 * 180.93007 * 9 8 6 11 11 H 1.08998 * 112.90707 * 214.96781 * 10 9 8 12 12 C 1.53005 * 106.41805 * 91.60322 * 10 9 8 13 13 C 1.52588 * 111.05230 * 197.20959 * 12 10 9 14 14 C 1.51911 * 108.63928 * 62.02588 * 13 12 10 15 15 C 1.52819 * 108.83117 * 296.45270 * 14 13 12 16 16 H 1.08997 * 108.97016 * 297.63804 * 15 14 13 17 17 N 1.46505 * 109.02714 * 178.76106 * 15 14 13 18 18 C 1.36936 * 119.99488 * 82.76222 * 17 15 14 19 19 H 1.07997 * 120.00198 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99688 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99733 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46825 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46994 * 299.99998 * 22 20 18 25 25 H 1.48502 * 109.47148 * 60.00477 * 22 20 18 26 26 C 1.50729 * 111.74440 * 58.18308 * 15 14 13 27 27 H 1.09006 * 109.27205 * 186.93706 * 26 15 14 28 28 C 1.47289 * 125.95515 * 175.42461 * 8 6 5 29 29 C 1.39930 * 118.11979 * 0.27678 * 5 4 3 30 30 C 1.50698 * 120.53860 * 179.72554 * 29 5 4 31 31 N 1.31857 * 118.95429 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47843 * 89.99328 * 1 2 3 33 33 H 1.09001 * 109.47134 * 209.99908 * 1 2 3 34 34 H 1.09003 * 109.47191 * 329.99083 * 1 2 3 35 35 H 1.08000 * 120.53757 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.96246 * 61.55476 * 9 8 6 37 37 H 1.08999 * 109.96314 * 300.30377 * 9 8 6 38 38 H 1.09000 * 109.16061 * 317.61425 * 12 10 9 39 39 H 1.09002 * 109.15914 * 76.85880 * 12 10 9 40 40 H 1.09000 * 109.67638 * 182.08833 * 13 12 10 41 41 H 1.09007 * 109.67887 * 302.62024 * 13 12 10 42 42 H 1.08999 * 109.97513 * 176.21581 * 14 13 12 43 43 H 1.09002 * 108.76567 * 55.97330 * 14 13 12 44 44 H 0.96993 * 120.00223 * 262.76956 * 17 15 14 45 45 H 0.97007 * 119.99538 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.85477 * 84.81137 * 28 8 6 47 47 H 1.09001 * 109.92757 * 322.27278 * 28 8 6 48 48 H 1.09000 * 109.47290 * 84.56829 * 30 29 5 49 49 H 1.09003 * 109.46871 * 204.56811 * 30 29 5 50 50 H 1.09000 * 109.46999 * 324.56508 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 -0.0005 5 6 4.1855 -0.0001 -0.0016 6 6 5.6638 -0.0001 -0.0016 7 8 6.2715 -0.7585 0.7285 8 7 6.3376 0.8407 -0.8111 9 6 5.7352 1.7291 -1.8179 10 6 6.9019 2.4827 -2.5137 11 1 6.6429 3.5054 -2.7876 12 6 7.2940 1.6430 -3.7312 13 6 8.6744 2.0380 -4.2479 14 6 9.6970 1.7658 -3.1580 15 6 9.3893 2.6609 -1.9582 16 1 9.4863 3.7037 -2.2601 17 7 10.3554 2.3806 -0.8931 18 6 11.5895 2.9736 -0.9147 19 1 11.8505 3.6482 -1.7167 20 6 12.5050 2.7077 0.0943 21 7 12.1870 1.8852 1.0714 22 14 14.1883 3.5172 0.0652 23 1 14.9720 3.0721 1.2455 24 1 14.9021 3.1303 -1.1781 25 1 14.0286 4.9930 0.1057 26 6 7.9962 2.4293 -1.4314 27 1 7.7753 3.1685 -0.6613 28 6 7.7993 1.0181 -0.8499 29 6 3.4661 -1.2003 -0.0081 30 6 4.1856 -2.5243 -0.0158 31 7 2.1453 -1.1538 0.0005 32 1 -0.3635 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5140 35 1 3.9816 2.1493 -0.0009 36 1 5.0681 2.4421 -1.3335 37 1 5.1829 1.1406 -2.5506 38 1 7.3049 0.5897 -3.4508 39 1 6.5597 1.7951 -4.5222 40 1 8.9152 1.4530 -5.1355 41 1 8.6842 3.0999 -4.4939 42 1 10.7003 1.9775 -3.5276 43 1 9.6257 0.7186 -2.8639 44 1 10.1208 1.7750 -0.1726 45 1 12.8267 1.6996 1.7767 46 1 8.2638 0.2714 -1.4940 47 1 8.2074 0.9604 0.1591 48 1 4.4450 -2.8029 1.0056 49 1 3.5377 -3.2874 -0.4471 50 1 5.0946 -2.4404 -0.6115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992849966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:59 Heat of formation + Delta-G solvation = 21.349851 kcal Electronic energy + Delta-G solvation = -30949.327147 eV Core-core repulsion = 26976.436307 eV Total energy + Delta-G solvation = -3972.890840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66344 -40.48979 -38.60546 -35.69183 -34.73969 -33.96955 -33.75074 -31.60557 -30.86760 -29.55809 -29.22733 -28.45040 -26.67602 -25.02448 -23.97095 -23.45358 -22.56721 -21.73489 -20.86461 -19.94810 -18.50522 -18.29620 -17.50935 -16.77707 -16.40304 -16.22439 -15.67390 -15.57102 -14.93205 -14.58036 -14.33101 -14.01451 -13.72873 -13.67844 -13.62014 -13.37244 -13.30634 -12.99496 -12.75727 -12.72777 -12.69296 -12.66991 -12.44609 -12.00097 -11.81195 -11.74331 -11.38717 -11.10799 -11.03453 -10.86594 -10.84996 -10.75434 -10.27297 -10.21663 -10.06034 -9.92788 -9.74937 -9.62970 -9.59944 -9.55870 -8.88737 -8.60842 -6.97949 -5.76779 -3.06485 0.24880 0.71691 2.54205 2.83457 3.37440 3.43218 3.47785 3.49158 3.52630 3.69945 4.06108 4.21312 4.41180 4.53597 4.61546 4.73793 4.76204 4.88119 5.02313 5.15695 5.18818 5.24985 5.27099 5.32026 5.36641 5.39167 5.46756 5.54047 5.57118 5.60562 5.68687 5.71769 5.78274 5.80424 5.84732 5.97627 6.00258 6.07007 6.18690 6.20527 6.29054 6.33839 6.44926 6.57292 6.60633 6.69509 6.87535 7.07787 7.42443 7.68759 7.71478 8.01473 8.41012 9.52224 10.08361 10.42604 11.45433 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002696 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.835922 B =10382.647459 C =11127.391574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.524 5.524 4 C 0.187 3.813 5 C -0.239 4.239 6 C 0.582 3.418 7 O -0.519 6.519 8 N -0.608 5.608 9 C 0.096 3.904 10 C -0.089 4.089 11 H 0.098 0.902 12 C -0.111 4.111 13 C -0.117 4.117 14 C -0.137 4.137 15 C 0.193 3.807 16 H 0.050 0.950 17 N -0.726 5.726 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.286 1.286 25 H -0.286 1.286 26 C -0.094 4.094 27 H 0.079 0.921 28 C 0.117 3.883 29 C 0.230 3.770 30 C -0.107 4.107 31 N -0.522 5.522 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 -2.736 -8.113 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.239 5.239 4 C 0.020 3.980 5 C -0.247 4.247 6 C 0.368 3.632 7 O -0.395 6.395 8 N -0.342 5.342 9 C -0.027 4.027 10 C -0.108 4.108 11 H 0.117 0.883 12 C -0.149 4.149 13 C -0.155 4.155 14 C -0.177 4.177 15 C 0.082 3.918 16 H 0.068 0.932 17 N -0.367 5.367 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.114 4.114 27 H 0.097 0.903 28 C -0.005 4.005 29 C 0.084 3.916 30 C -0.164 4.164 31 N -0.237 5.237 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.192 0.808 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.922 -3.114 -7.641 24.362 hybrid contribution 1.856 0.360 0.265 1.909 sum -21.066 -2.754 -7.376 22.489 Atomic orbital electron populations 1.20623 0.85323 1.04449 1.04116 1.23487 0.98429 0.83362 0.88095 1.68319 1.09550 1.30031 1.16012 1.23584 0.89413 0.97830 0.87155 1.21589 0.96045 0.96477 1.10551 1.17344 0.85459 0.80217 0.80199 1.90847 1.69136 1.38934 1.40625 1.48412 1.08863 1.40302 1.36613 1.22581 0.96586 0.92832 0.90721 1.22260 0.93977 0.99248 0.95305 0.88334 1.21560 0.97492 0.99614 0.96231 1.21279 0.94787 1.01072 0.98399 1.22061 0.98415 1.00934 0.96278 1.19534 0.86223 0.97042 0.88974 0.93216 1.42501 1.12849 1.55169 1.26193 1.19161 0.90593 1.20862 1.06580 0.91218 1.24744 0.98540 1.00046 0.97468 1.69651 1.35583 1.39073 1.13576 0.86300 0.84345 0.78859 0.76843 1.21747 1.21301 1.21318 1.21780 0.96144 0.96326 0.97152 0.90272 1.22169 0.78102 0.97276 1.02913 1.21875 0.88899 0.95368 0.85494 1.20867 0.99599 0.91093 1.04829 1.68219 1.08992 1.30161 1.16362 0.89279 0.89388 0.89333 0.80760 0.91605 0.91412 0.92040 0.92442 0.92636 0.92210 0.91669 0.92647 0.78171 0.93407 0.90609 0.89583 0.88462 0.89905 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.00 0.37 -0.21 16 2 C 0.33 3.58 7.64 -157.07 -1.20 2.38 16 3 N -0.52 -5.94 10.31 -10.39 -0.11 -6.05 16 4 C 0.19 2.08 9.76 -16.77 -0.16 1.92 16 5 C -0.24 -3.02 5.41 -104.69 -0.57 -3.59 16 6 C 0.58 8.59 6.74 -12.34 -0.08 8.51 16 7 O -0.52 -9.47 15.91 5.32 0.08 -9.38 16 8 N -0.61 -8.24 3.33 -171.61 -0.57 -8.81 16 9 C 0.10 0.99 5.22 -2.43 -0.01 0.98 16 10 C -0.09 -0.97 3.61 -88.85 -0.32 -1.29 16 11 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.11 -1.21 4.61 -26.94 -0.12 -1.33 16 13 C -0.12 -1.45 5.88 -27.50 -0.16 -1.61 16 14 C -0.14 -2.23 5.24 -27.38 -0.14 -2.38 16 15 C 0.19 3.46 2.49 -69.16 -0.17 3.29 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 N -0.73 -17.19 5.03 -54.62 -0.27 -17.46 16 18 C -0.24 -6.44 9.89 -15.06 -0.15 -6.59 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.09 -1.39 2.54 -90.76 -0.23 -1.62 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 C 0.12 1.86 5.01 -3.14 -0.02 1.84 16 29 C 0.23 2.84 6.86 -81.82 -0.56 2.28 16 30 C -0.11 -1.15 9.05 36.00 0.33 -0.82 16 31 N -0.52 -6.19 10.26 -6.68 -0.07 -6.26 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.18 1.60 6.14 -52.49 -0.32 1.28 16 36 H 0.07 0.57 5.74 -51.93 -0.30 0.27 16 37 H 0.07 0.64 7.74 -51.93 -0.40 0.24 16 38 H 0.06 0.73 7.08 -51.93 -0.37 0.36 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.95 6.79 -51.93 -0.35 0.60 16 44 H 0.38 9.80 6.44 -40.82 -0.26 9.54 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.08 1.26 6.07 -51.93 -0.32 0.94 16 47 H 0.09 1.63 7.44 -51.93 -0.39 1.25 16 48 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.97 7.08 -51.93 -0.37 0.60 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -32.27 388.83 -10.37 -42.64 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.69 Total: 8.21 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.30 Total: 1.32 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.30 Total: -65.75 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.27 -10.37 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.991 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds