Wall clock time and date at job start Wed Apr 1 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31880 * 118.95319 * 2 1 4 4 C 1.32134 * 120.96763 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92467 * 0.02562 * 4 3 2 6 6 C 1.47826 * 120.94077 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00047 * 136.03505 * 6 5 4 8 8 N 1.34773 * 120.00013 * 316.03799 * 6 5 4 9 9 C 1.47168 * 125.64981 * 354.75957 * 8 6 5 10 10 C 1.55349 * 106.96583 * 180.93007 * 9 8 6 11 11 H 1.08998 * 112.90707 * 214.96781 * 10 9 8 12 12 C 1.53005 * 106.41805 * 91.60322 * 10 9 8 13 13 C 1.52588 * 111.05230 * 197.20959 * 12 10 9 14 14 C 1.51911 * 108.63928 * 62.02588 * 13 12 10 15 15 C 1.52819 * 108.83117 * 296.45270 * 14 13 12 16 16 H 1.08997 * 108.97016 * 297.63804 * 15 14 13 17 17 N 1.46505 * 109.02714 * 178.76106 * 15 14 13 18 18 C 1.36936 * 119.99488 * 82.76222 * 17 15 14 19 19 H 1.07997 * 120.00198 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99688 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99733 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46825 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46994 * 299.99998 * 22 20 18 25 25 H 1.48502 * 109.47148 * 60.00477 * 22 20 18 26 26 C 1.50729 * 111.74440 * 58.18308 * 15 14 13 27 27 H 1.09006 * 109.27205 * 186.93706 * 26 15 14 28 28 C 1.47289 * 125.95515 * 175.42461 * 8 6 5 29 29 C 1.39930 * 118.11979 * 0.27678 * 5 4 3 30 30 C 1.50698 * 120.53860 * 179.72554 * 29 5 4 31 31 N 1.31857 * 118.95429 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47843 * 89.99328 * 1 2 3 33 33 H 1.09001 * 109.47134 * 209.99908 * 1 2 3 34 34 H 1.09003 * 109.47191 * 329.99083 * 1 2 3 35 35 H 1.08000 * 120.53757 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.96246 * 61.55476 * 9 8 6 37 37 H 1.08999 * 109.96314 * 300.30377 * 9 8 6 38 38 H 1.09000 * 109.16061 * 317.61425 * 12 10 9 39 39 H 1.09002 * 109.15914 * 76.85880 * 12 10 9 40 40 H 1.09000 * 109.67638 * 182.08833 * 13 12 10 41 41 H 1.09007 * 109.67887 * 302.62024 * 13 12 10 42 42 H 1.08999 * 109.97513 * 176.21581 * 14 13 12 43 43 H 1.09002 * 108.76567 * 55.97330 * 14 13 12 44 44 H 0.96993 * 120.00223 * 262.76956 * 17 15 14 45 45 H 0.97007 * 119.99538 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.85477 * 84.81137 * 28 8 6 47 47 H 1.09001 * 109.92757 * 322.27278 * 28 8 6 48 48 H 1.09000 * 109.47290 * 84.56829 * 30 29 5 49 49 H 1.09003 * 109.46871 * 204.56811 * 30 29 5 50 50 H 1.09000 * 109.46999 * 324.56508 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 -0.0005 5 6 4.1855 -0.0001 -0.0016 6 6 5.6638 -0.0001 -0.0016 7 8 6.2715 -0.7585 0.7285 8 7 6.3376 0.8407 -0.8111 9 6 5.7352 1.7291 -1.8179 10 6 6.9019 2.4827 -2.5137 11 1 6.6429 3.5054 -2.7876 12 6 7.2940 1.6430 -3.7312 13 6 8.6744 2.0380 -4.2479 14 6 9.6970 1.7658 -3.1580 15 6 9.3893 2.6609 -1.9582 16 1 9.4863 3.7037 -2.2601 17 7 10.3554 2.3806 -0.8931 18 6 11.5895 2.9736 -0.9147 19 1 11.8505 3.6482 -1.7167 20 6 12.5050 2.7077 0.0943 21 7 12.1870 1.8852 1.0714 22 14 14.1883 3.5172 0.0652 23 1 14.9720 3.0721 1.2455 24 1 14.9021 3.1303 -1.1781 25 1 14.0286 4.9930 0.1057 26 6 7.9962 2.4293 -1.4314 27 1 7.7753 3.1685 -0.6613 28 6 7.7993 1.0181 -0.8499 29 6 3.4661 -1.2003 -0.0081 30 6 4.1856 -2.5243 -0.0158 31 7 2.1453 -1.1538 0.0005 32 1 -0.3635 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5140 35 1 3.9816 2.1493 -0.0009 36 1 5.0681 2.4421 -1.3335 37 1 5.1829 1.1406 -2.5506 38 1 7.3049 0.5897 -3.4508 39 1 6.5597 1.7951 -4.5222 40 1 8.9152 1.4530 -5.1355 41 1 8.6842 3.0999 -4.4939 42 1 10.7003 1.9775 -3.5276 43 1 9.6257 0.7186 -2.8639 44 1 10.1208 1.7750 -0.1726 45 1 12.8267 1.6996 1.7767 46 1 8.2638 0.2714 -1.4940 47 1 8.2074 0.9604 0.1591 48 1 4.4450 -2.8029 1.0056 49 1 3.5377 -3.2874 -0.4471 50 1 5.0946 -2.4404 -0.6115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992849966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:58 Heat of formation + Delta-G solvation = 0.787380 kcal Electronic energy + Delta-G solvation = -30950.218803 eV Core-core repulsion = 26976.436307 eV Total energy + Delta-G solvation = -3973.782496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.59531 -41.58485 -39.80495 -37.06511 -35.69167 -35.43726 -34.63835 -33.32209 -31.98092 -30.66206 -30.26001 -29.55151 -27.90409 -26.20827 -25.47072 -24.67394 -23.46734 -22.86941 -22.10289 -21.03025 -19.79302 -19.28511 -19.06646 -18.13872 -17.44405 -17.19319 -16.84546 -16.61093 -16.43684 -15.90776 -15.38540 -15.28909 -15.21144 -14.97755 -14.53408 -14.45435 -14.24079 -14.11063 -14.01618 -13.89438 -13.49242 -13.35547 -13.29902 -13.18766 -12.99685 -12.83827 -12.76947 -12.71752 -12.47775 -12.28337 -12.18542 -11.97465 -11.89384 -11.72700 -11.28696 -11.20671 -11.11054 -11.00500 -10.72908 -10.56064 -10.48058 -9.75425 -8.97797 -7.91845 -5.20152 -0.64727 -0.16728 1.43645 1.46661 1.49363 1.55393 1.73018 2.49056 2.56833 2.75695 2.88441 3.19556 3.21409 3.40021 3.42013 3.57302 3.72304 3.80364 4.02201 4.09457 4.17105 4.25394 4.29122 4.35141 4.39282 4.45522 4.50306 4.56796 4.61122 4.62452 4.71818 4.72840 4.75649 4.79384 4.85334 4.88304 4.91679 5.03836 5.08743 5.15462 5.20244 5.29089 5.32065 5.36418 5.43849 5.54408 5.58239 5.71267 5.72750 6.29909 6.32722 6.85089 6.87928 7.35703 8.13309 8.34251 9.31508 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002696 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.835922 B =10382.647459 C =11127.391574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.328 3.672 3 N -0.530 5.530 4 C 0.196 3.804 5 C -0.253 4.253 6 C 0.582 3.418 7 O -0.567 6.567 8 N -0.604 5.604 9 C 0.094 3.906 10 C -0.075 4.075 11 H 0.131 0.869 12 C -0.109 4.109 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.189 3.811 16 H 0.051 0.949 17 N -0.741 5.741 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.969 3.031 23 H -0.301 1.301 24 H -0.278 1.278 25 H -0.276 1.276 26 C -0.088 4.088 27 H 0.071 0.929 28 C 0.126 3.874 29 C 0.223 3.777 30 C -0.103 4.103 31 N -0.531 5.531 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.195 0.805 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.370 0.630 45 H 0.248 0.752 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.300 -1.065 -10.658 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.244 5.244 4 C 0.029 3.971 5 C -0.261 4.261 6 C 0.369 3.631 7 O -0.446 6.446 8 N -0.337 5.337 9 C -0.027 4.027 10 C -0.094 4.094 11 H 0.149 0.851 12 C -0.146 4.146 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.081 3.919 16 H 0.069 0.931 17 N -0.381 5.381 18 C -0.364 4.364 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.799 3.201 23 H -0.228 1.228 24 H -0.205 1.205 25 H -0.203 1.203 26 C -0.108 4.108 27 H 0.090 0.910 28 C 0.003 3.997 29 C 0.077 3.923 30 C -0.160 4.160 31 N -0.247 5.247 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.212 0.788 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.109 0.891 49 H 0.120 0.880 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.902 -1.400 -10.269 27.898 hybrid contribution 2.684 -0.166 1.009 2.872 sum -23.218 -1.566 -9.260 25.045 Atomic orbital electron populations 1.20796 0.82521 1.05456 1.05543 1.24309 1.00112 0.82913 0.86351 1.68454 1.09313 1.30176 1.16505 1.23865 0.89520 0.97900 0.85819 1.21378 0.94327 0.97503 1.12865 1.17703 0.86410 0.79488 0.79454 1.90818 1.70278 1.40944 1.42583 1.48414 1.07769 1.40453 1.37028 1.22837 0.96583 0.92896 0.90419 1.22325 0.91994 1.01246 0.93872 0.85080 1.21568 0.97323 0.98674 0.97028 1.21219 0.94125 1.02278 0.97057 1.21891 0.98762 0.99358 0.96967 1.19784 0.86774 0.97270 0.88083 0.93067 1.42777 1.13218 1.54718 1.27362 1.19589 0.91493 1.19545 1.05800 0.90359 1.25543 1.02319 1.01542 0.97764 1.69833 1.36511 1.41480 1.14585 0.85265 0.80127 0.78245 0.76473 1.22760 1.20459 1.20251 1.21603 0.95661 0.94938 0.98582 0.91049 1.21841 0.79749 0.97951 1.00164 1.22069 0.89402 0.95660 0.85185 1.20830 0.99430 0.91373 1.04353 1.68321 1.08496 1.30792 1.17089 0.87408 0.88510 0.88177 0.78847 0.89034 0.89424 0.93419 0.88851 0.91303 0.90745 0.94036 0.94373 0.79786 0.94315 0.91907 0.93898 0.89133 0.88012 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.31 71.23 0.73 -0.15 16 2 C 0.33 6.27 7.64 138.70 1.06 7.33 16 3 N -0.53 -10.59 10.31 -186.80 -1.93 -12.52 16 4 C 0.20 3.93 9.76 85.07 0.83 4.76 16 5 C -0.25 -6.20 5.41 -19.91 -0.11 -6.30 16 6 C 0.58 17.54 6.74 86.78 0.59 18.13 16 7 O -0.57 -21.99 15.91 -3.88 -0.06 -22.06 16 8 N -0.60 -16.26 3.33 -815.13 -2.71 -18.97 16 9 C 0.09 1.65 5.22 87.06 0.45 2.11 16 10 C -0.08 -1.39 3.61 -9.65 -0.03 -1.43 16 11 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 12 C -0.11 -1.96 4.61 30.46 0.14 -1.82 16 13 C -0.11 -2.38 5.88 30.10 0.18 -2.21 16 14 C -0.13 -4.23 5.24 30.18 0.16 -4.07 16 15 C 0.19 6.82 2.49 44.19 0.11 6.93 16 16 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 17 N -0.74 -36.46 5.03 -326.74 -1.64 -38.10 16 18 C -0.23 -12.69 9.89 84.03 0.83 -11.86 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 22 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 23 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C -0.09 -2.56 2.54 -10.89 -0.03 -2.59 16 27 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 28 C 0.13 4.19 5.01 86.53 0.43 4.62 16 29 C 0.22 5.35 6.86 42.92 0.29 5.65 16 30 C -0.10 -2.24 9.05 71.24 0.64 -1.60 16 31 N -0.53 -11.74 10.26 -175.03 -1.80 -13.54 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.19 2.97 6.14 -2.91 -0.02 2.95 16 36 H 0.09 1.20 5.74 -2.39 -0.01 1.19 16 37 H 0.09 1.29 7.74 -2.39 -0.02 1.28 16 38 H 0.05 1.02 7.08 -2.39 -0.02 1.01 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.36 6.79 -2.39 -0.02 1.34 16 44 H 0.37 20.12 6.44 -92.71 -0.60 19.52 16 45 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 46 H 0.06 2.23 6.07 -2.38 -0.01 2.22 16 47 H 0.04 1.79 7.44 -2.39 -0.02 1.77 16 48 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.07 1.76 7.08 -2.39 -0.02 1.74 16 Total: -1.00 -74.54 388.83 1.29 -73.25 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.36 Total: 30.70 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.75 Total: 13.34 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -7.79 Total: -143.78 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.54 1.29 -73.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.041 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds