Wall clock time and date at job start Wed Apr 1 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31885 * 118.94763 * 2 1 4 4 C 1.32135 * 120.96044 * 180.02562 * 3 2 1 5 5 C 1.39971 * 118.92530 * 0.02562 * 4 3 2 6 6 C 1.47836 * 120.93955 * 180.02562 * 5 4 3 7 7 O 1.21558 * 119.99890 * 143.66448 * 6 5 4 8 8 N 1.34777 * 119.99888 * 323.66743 * 6 5 4 9 9 C 1.47514 * 125.74999 * 355.02400 * 8 6 5 10 10 C 1.55844 * 104.45010 * 204.84192 * 9 8 6 11 11 H 1.08999 * 112.79964 * 200.63264 * 10 9 8 12 12 C 1.52991 * 106.36747 * 76.92963 * 10 9 8 13 13 C 1.52622 * 110.93013 * 198.11485 * 12 10 9 14 14 C 1.53299 * 108.50802 * 62.20815 * 13 12 10 15 15 C 1.52845 * 108.21089 * 296.20552 * 14 13 12 16 16 H 1.09002 * 109.06096 * 179.53188 * 15 14 13 17 17 N 1.46500 * 109.05927 * 298.52330 * 15 14 13 18 18 C 1.36944 * 120.00101 * 275.99843 * 17 15 14 19 19 H 1.07998 * 119.99693 * 359.72558 * 18 17 15 20 20 C 1.38807 * 120.00045 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99727 * 179.72529 * 20 18 17 22 22 Si 1.86797 * 120.00201 * 359.71973 * 20 18 17 23 23 H 1.48497 * 109.47049 * 90.00253 * 22 20 18 24 24 H 1.48498 * 109.47375 * 210.00565 * 22 20 18 25 25 H 1.48502 * 109.47080 * 330.00655 * 22 20 18 26 26 C 1.50891 * 111.51319 * 59.02535 * 15 14 13 27 27 H 1.08994 * 109.03348 * 186.20858 * 26 15 14 28 28 C 1.47421 * 125.72226 * 174.83228 * 8 6 5 29 29 C 1.39931 * 118.11971 * 0.27172 * 5 4 3 30 30 C 1.50697 * 120.53531 * 179.72735 * 29 5 4 31 31 N 1.31851 * 118.94876 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47350 * 89.99948 * 1 2 3 33 33 H 1.09004 * 109.47265 * 209.99703 * 1 2 3 34 34 H 1.08998 * 109.47239 * 329.99969 * 1 2 3 35 35 H 1.08000 * 120.53808 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.55136 * 86.05038 * 9 8 6 37 37 H 1.09003 * 110.34043 * 323.52697 * 9 8 6 38 38 H 1.09001 * 109.18110 * 77.74073 * 12 10 9 39 39 H 1.08994 * 109.18220 * 318.48938 * 12 10 9 40 40 H 1.09004 * 109.63285 * 302.49573 * 13 12 10 41 41 H 1.08999 * 109.62691 * 181.91466 * 13 12 10 42 42 H 1.08998 * 109.71538 * 176.52854 * 14 13 12 43 43 H 1.08995 * 109.75142 * 55.90540 * 14 13 12 44 44 H 0.97000 * 120.00421 * 96.00037 * 17 15 14 45 45 H 0.97006 * 120.00138 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.05444 * 60.06575 * 28 8 6 47 47 H 1.09004 * 110.05040 * 298.59114 * 28 8 6 48 48 H 1.09000 * 109.47232 * 84.50180 * 30 29 5 49 49 H 1.09002 * 109.47388 * 204.50343 * 30 29 5 50 50 H 1.09001 * 109.47473 * 324.50071 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1855 -0.0001 -0.0016 6 6 5.6638 -0.0001 -0.0016 7 8 6.2716 -0.8487 0.6214 8 7 6.3377 0.9408 -0.6924 9 6 5.7357 1.9617 -1.5706 10 6 6.8707 2.3307 -2.5729 11 1 6.7167 3.2999 -3.0472 12 6 6.9377 1.1880 -3.5879 13 6 8.2670 1.2020 -4.3377 14 6 9.3984 0.9849 -3.3264 15 6 9.4078 2.1680 -2.3588 16 1 10.2030 2.0235 -1.6275 17 7 9.6671 3.3986 -3.1102 18 6 10.9541 3.7645 -3.4018 19 1 11.7781 3.1482 -3.0740 20 6 11.1998 4.9307 -4.1134 21 7 12.4371 5.2851 -4.3889 22 14 9.7746 5.9971 -4.6799 23 1 9.4581 6.9987 -3.6304 24 1 10.1483 6.6967 -5.9353 25 1 8.5843 5.1434 -4.9244 26 6 8.0906 2.3011 -1.6348 27 1 8.1017 3.2156 -1.0419 28 6 7.8004 1.1250 -0.6939 29 6 3.4660 -1.2002 -0.0080 30 6 4.1856 -2.5243 -0.0156 31 7 2.1452 -1.1538 0.0005 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 3.9816 2.1494 -0.0009 36 1 5.4392 2.8370 -0.9926 37 1 4.8789 1.5471 -2.1018 38 1 6.1219 1.2957 -4.3028 39 1 6.8315 0.2376 -3.0649 40 1 8.3979 2.1642 -4.8330 41 1 8.2785 0.4017 -5.0776 42 1 10.3533 0.9300 -3.8492 43 1 9.2273 0.0604 -2.7752 44 1 8.9272 3.9543 -3.4012 45 1 12.6088 6.1000 -4.8865 46 1 8.2903 0.2231 -1.0609 47 1 8.1489 1.3569 0.3125 48 1 4.4460 -2.8022 1.0057 49 1 3.5373 -3.2877 -0.4458 50 1 5.0940 -2.4408 -0.6123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992849978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:02 Heat of formation + Delta-G solvation = 26.775645 kcal Electronic energy + Delta-G solvation = -31132.311108 eV Core-core repulsion = 27159.655547 eV Total energy + Delta-G solvation = -3972.655560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78727 -40.61601 -38.74865 -35.94728 -34.81423 -33.96200 -33.45200 -31.69195 -30.94147 -30.00310 -29.58677 -28.72533 -26.78363 -25.20170 -24.05125 -23.00898 -22.45628 -22.01382 -21.17986 -20.01694 -18.45891 -18.34263 -17.78098 -17.08900 -16.44606 -16.33397 -15.88423 -15.67619 -14.97787 -14.62413 -14.37255 -14.20577 -14.05404 -13.79347 -13.51747 -13.39774 -13.25496 -13.18849 -12.91300 -12.80725 -12.75397 -12.54651 -12.47900 -12.14094 -11.93758 -11.84406 -11.53548 -11.45273 -11.22680 -10.98326 -10.93016 -10.85362 -10.33206 -10.16370 -10.14034 -9.90240 -9.77145 -9.68873 -9.66962 -9.59432 -8.93769 -8.80371 -7.31678 -5.80784 -3.16492 0.11903 0.62869 2.42199 2.65406 3.29137 3.31335 3.33650 3.41192 3.43477 3.60679 3.96566 4.07865 4.35043 4.48763 4.54100 4.59996 4.71984 4.76788 4.94795 5.07502 5.09920 5.17275 5.18522 5.24292 5.31173 5.38249 5.40303 5.44663 5.48574 5.51291 5.54230 5.60807 5.68826 5.71571 5.79305 5.89844 5.96121 5.97984 5.98389 6.07456 6.20654 6.23102 6.33331 6.51181 6.63827 6.69632 6.84390 6.93200 7.23025 7.62607 7.83170 7.95389 8.38044 9.16266 9.88425 10.08025 11.37624 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.002758 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.236614 B =10148.968428 C =10834.628155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.336 3.664 3 N -0.525 5.525 4 C 0.187 3.813 5 C -0.245 4.245 6 C 0.584 3.416 7 O -0.526 6.526 8 N -0.606 5.606 9 C 0.092 3.908 10 C -0.089 4.089 11 H 0.100 0.900 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.135 4.135 15 C 0.195 3.805 16 H 0.058 0.942 17 N -0.743 5.743 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.099 4.099 27 H 0.081 0.919 28 C 0.118 3.882 29 C 0.234 3.766 30 C -0.105 4.105 31 N -0.523 5.523 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.175 0.825 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 -11.523 7.511 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 N -0.240 5.240 4 C 0.020 3.980 5 C -0.252 4.252 6 C 0.371 3.629 7 O -0.403 6.403 8 N -0.339 5.339 9 C -0.031 4.031 10 C -0.108 4.108 11 H 0.119 0.881 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.175 4.175 15 C 0.085 3.915 16 H 0.076 0.924 17 N -0.386 5.386 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.119 4.119 27 H 0.100 0.900 28 C -0.004 4.004 29 C 0.087 3.913 30 C -0.163 4.163 31 N -0.238 5.238 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.192 0.808 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.881 -12.019 7.891 27.023 hybrid contribution -0.010 1.126 -0.542 1.249 sum -22.890 -10.894 7.350 26.394 Atomic orbital electron populations 1.20642 0.85253 1.04492 1.04233 1.23525 0.98490 0.83339 0.87649 1.68340 1.09559 1.30030 1.16050 1.23675 0.89521 0.97929 0.86838 1.21545 0.95912 0.96485 1.11298 1.17345 0.85529 0.80740 0.79326 1.90808 1.69310 1.36658 1.43570 1.48462 1.08505 1.31326 1.45630 1.22906 0.97225 0.90933 0.92029 1.22357 0.93392 1.00032 0.95007 0.88141 1.21494 0.98427 0.97533 0.97261 1.21387 0.93709 1.02232 0.97666 1.22166 0.99014 0.98022 0.98269 1.19505 0.92466 0.87260 0.92272 0.92416 1.42739 1.05236 1.24105 1.66537 1.19055 0.83484 1.05408 1.29094 0.89172 1.24655 0.95729 0.98053 1.00646 1.69695 1.17561 1.25768 1.45111 0.86601 0.82735 0.81057 0.78390 1.21160 1.21846 1.20325 1.21710 0.96159 0.98057 0.95998 0.90027 1.21972 0.78896 0.99484 1.00058 1.21905 0.88887 0.95428 0.85074 1.20875 0.99678 0.90968 1.04732 1.68244 1.08997 1.30140 1.16436 0.89169 0.89332 0.89277 0.80789 0.90956 0.90713 0.92712 0.92328 0.90808 0.93085 0.91268 0.93392 0.80701 0.93069 0.90403 0.90936 0.88571 0.90023 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.31 36.01 0.37 -0.18 16 2 C 0.34 3.38 7.64 -157.07 -1.20 2.18 16 3 N -0.53 -5.56 10.32 -10.39 -0.11 -5.67 16 4 C 0.19 1.89 9.48 -16.77 -0.16 1.73 16 5 C -0.24 -2.75 5.43 -104.69 -0.57 -3.32 16 6 C 0.58 7.33 7.01 -12.33 -0.09 7.24 16 7 O -0.53 -7.96 15.40 5.31 0.08 -7.88 16 8 N -0.61 -6.96 2.85 -171.22 -0.49 -7.44 16 9 C 0.09 0.90 4.48 -1.97 -0.01 0.89 16 10 C -0.09 -1.06 3.34 -88.63 -0.30 -1.35 16 11 H 0.10 1.22 7.96 -51.93 -0.41 0.80 16 12 C -0.11 -1.35 4.81 -26.93 -0.13 -1.48 16 13 C -0.11 -1.66 5.84 -26.77 -0.16 -1.82 16 14 C -0.13 -2.15 5.48 -26.66 -0.15 -2.29 16 15 C 0.19 3.30 2.50 -69.07 -0.17 3.13 16 16 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 17 N -0.74 -15.78 3.98 -54.54 -0.22 -16.00 16 18 C -0.24 -6.35 10.38 -15.06 -0.16 -6.51 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 22 Si 0.88 21.07 27.73 -169.99 -4.71 16.35 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.09 6.53 56.52 0.37 -5.72 16 26 C -0.10 -1.34 2.20 -91.00 -0.20 -1.54 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 C 0.12 1.47 5.88 -3.34 -0.02 1.45 16 29 C 0.23 2.62 6.86 -81.82 -0.56 2.06 16 30 C -0.11 -1.01 8.94 36.00 0.32 -0.69 16 31 N -0.52 -5.77 10.26 -6.67 -0.07 -5.84 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.18 1.40 5.88 -52.49 -0.31 1.10 16 36 H 0.07 0.59 7.03 -51.93 -0.36 0.22 16 37 H 0.07 0.68 7.07 -51.93 -0.37 0.31 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.73 7.16 -51.93 -0.37 0.36 16 40 H 0.07 1.28 7.39 -51.93 -0.38 0.89 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.68 6.75 -51.93 -0.35 0.33 16 44 H 0.36 7.50 5.12 -40.82 -0.21 7.30 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 1.02 6.49 -51.93 -0.34 0.69 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.90 6.87 -51.93 -0.36 0.54 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -31.96 384.89 -9.90 -41.86 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.70 Total: 6.98 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.26 Total: -0.46 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.11 Total: -62.66 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.08 Total: -7.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.96 -9.90 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.638 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds