Wall clock time and date at job start Wed Apr 1 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31885 * 118.94763 * 2 1 4 4 C 1.32135 * 120.96044 * 180.02562 * 3 2 1 5 5 C 1.39971 * 118.92530 * 0.02562 * 4 3 2 6 6 C 1.47836 * 120.93955 * 180.02562 * 5 4 3 7 7 O 1.21558 * 119.99890 * 143.66448 * 6 5 4 8 8 N 1.34777 * 119.99888 * 323.66743 * 6 5 4 9 9 C 1.47514 * 125.74999 * 355.02400 * 8 6 5 10 10 C 1.55844 * 104.45010 * 204.84192 * 9 8 6 11 11 H 1.08999 * 112.79964 * 200.63264 * 10 9 8 12 12 C 1.52991 * 106.36747 * 76.92963 * 10 9 8 13 13 C 1.52622 * 110.93013 * 198.11485 * 12 10 9 14 14 C 1.53299 * 108.50802 * 62.20815 * 13 12 10 15 15 C 1.52845 * 108.21089 * 296.20552 * 14 13 12 16 16 H 1.09002 * 109.06096 * 179.53188 * 15 14 13 17 17 N 1.46500 * 109.05927 * 298.52330 * 15 14 13 18 18 C 1.36944 * 120.00101 * 275.99843 * 17 15 14 19 19 H 1.07998 * 119.99693 * 359.72558 * 18 17 15 20 20 C 1.38807 * 120.00045 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99727 * 179.72529 * 20 18 17 22 22 Si 1.86797 * 120.00201 * 359.71973 * 20 18 17 23 23 H 1.48497 * 109.47049 * 90.00253 * 22 20 18 24 24 H 1.48498 * 109.47375 * 210.00565 * 22 20 18 25 25 H 1.48502 * 109.47080 * 330.00655 * 22 20 18 26 26 C 1.50891 * 111.51319 * 59.02535 * 15 14 13 27 27 H 1.08994 * 109.03348 * 186.20858 * 26 15 14 28 28 C 1.47421 * 125.72226 * 174.83228 * 8 6 5 29 29 C 1.39931 * 118.11971 * 0.27172 * 5 4 3 30 30 C 1.50697 * 120.53531 * 179.72735 * 29 5 4 31 31 N 1.31851 * 118.94876 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47350 * 89.99948 * 1 2 3 33 33 H 1.09004 * 109.47265 * 209.99703 * 1 2 3 34 34 H 1.08998 * 109.47239 * 329.99969 * 1 2 3 35 35 H 1.08000 * 120.53808 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.55136 * 86.05038 * 9 8 6 37 37 H 1.09003 * 110.34043 * 323.52697 * 9 8 6 38 38 H 1.09001 * 109.18110 * 77.74073 * 12 10 9 39 39 H 1.08994 * 109.18220 * 318.48938 * 12 10 9 40 40 H 1.09004 * 109.63285 * 302.49573 * 13 12 10 41 41 H 1.08999 * 109.62691 * 181.91466 * 13 12 10 42 42 H 1.08998 * 109.71538 * 176.52854 * 14 13 12 43 43 H 1.08995 * 109.75142 * 55.90540 * 14 13 12 44 44 H 0.97000 * 120.00421 * 96.00037 * 17 15 14 45 45 H 0.97006 * 120.00138 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.05444 * 60.06575 * 28 8 6 47 47 H 1.09004 * 110.05040 * 298.59114 * 28 8 6 48 48 H 1.09000 * 109.47232 * 84.50180 * 30 29 5 49 49 H 1.09002 * 109.47388 * 204.50343 * 30 29 5 50 50 H 1.09001 * 109.47473 * 324.50071 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1855 -0.0001 -0.0016 6 6 5.6638 -0.0001 -0.0016 7 8 6.2716 -0.8487 0.6214 8 7 6.3377 0.9408 -0.6924 9 6 5.7357 1.9617 -1.5706 10 6 6.8707 2.3307 -2.5729 11 1 6.7167 3.2999 -3.0472 12 6 6.9377 1.1880 -3.5879 13 6 8.2670 1.2020 -4.3377 14 6 9.3984 0.9849 -3.3264 15 6 9.4078 2.1680 -2.3588 16 1 10.2030 2.0235 -1.6275 17 7 9.6671 3.3986 -3.1102 18 6 10.9541 3.7645 -3.4018 19 1 11.7781 3.1482 -3.0740 20 6 11.1998 4.9307 -4.1134 21 7 12.4371 5.2851 -4.3889 22 14 9.7746 5.9971 -4.6799 23 1 9.4581 6.9987 -3.6304 24 1 10.1483 6.6967 -5.9353 25 1 8.5843 5.1434 -4.9244 26 6 8.0906 2.3011 -1.6348 27 1 8.1017 3.2156 -1.0419 28 6 7.8004 1.1250 -0.6939 29 6 3.4660 -1.2002 -0.0080 30 6 4.1856 -2.5243 -0.0156 31 7 2.1452 -1.1538 0.0005 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 3.9816 2.1494 -0.0009 36 1 5.4392 2.8370 -0.9926 37 1 4.8789 1.5471 -2.1018 38 1 6.1219 1.2957 -4.3028 39 1 6.8315 0.2376 -3.0649 40 1 8.3979 2.1642 -4.8330 41 1 8.2785 0.4017 -5.0776 42 1 10.3533 0.9300 -3.8492 43 1 9.2273 0.0604 -2.7752 44 1 8.9272 3.9543 -3.4012 45 1 12.6088 6.1000 -4.8865 46 1 8.2903 0.2231 -1.0609 47 1 8.1489 1.3569 0.3125 48 1 4.4460 -2.8022 1.0057 49 1 3.5373 -3.2877 -0.4458 50 1 5.0940 -2.4408 -0.6123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992849978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:01 Heat of formation + Delta-G solvation = 7.181303 kcal Electronic energy + Delta-G solvation = -31133.160782 eV Core-core repulsion = 27159.655547 eV Total energy + Delta-G solvation = -3973.505235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.59699 -41.60770 -39.80378 -37.21987 -35.62264 -35.13816 -34.58832 -33.34504 -32.00841 -31.41597 -30.24423 -29.60123 -27.91833 -26.34508 -25.10127 -24.28618 -23.50439 -23.06852 -22.36261 -20.93021 -19.91606 -19.42324 -19.13784 -18.13723 -17.36137 -17.10911 -16.85822 -16.55035 -16.45819 -16.08889 -15.56790 -15.33834 -15.17499 -14.81482 -14.54154 -14.35288 -14.26120 -14.23102 -14.12796 -13.83075 -13.60890 -13.37007 -13.28048 -13.17833 -13.06058 -12.80648 -12.77924 -12.72459 -12.54297 -12.48039 -12.18034 -12.05000 -11.79373 -11.71042 -11.38972 -11.25050 -11.06306 -10.92300 -10.71711 -10.53911 -10.45728 -9.73758 -9.25397 -7.96906 -5.29420 -0.65647 -0.13711 1.39875 1.44634 1.51214 1.51930 1.73433 2.52323 2.53141 2.77065 2.89844 3.19252 3.22550 3.34512 3.40467 3.44679 3.72643 3.76296 3.95731 4.07624 4.16308 4.19827 4.27713 4.31858 4.35354 4.42871 4.55414 4.56931 4.59730 4.61314 4.69985 4.70377 4.75310 4.79165 4.81246 4.86787 4.88799 5.03364 5.07203 5.09315 5.11847 5.20057 5.32462 5.36426 5.42082 5.57623 5.61587 5.75291 5.84176 6.26612 6.31958 6.86985 6.90453 7.14277 7.89619 8.10410 9.25053 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.002758 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.236614 B =10148.968428 C =10834.628155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.329 3.671 3 N -0.534 5.534 4 C 0.193 3.807 5 C -0.257 4.257 6 C 0.587 3.413 7 O -0.559 6.559 8 N -0.602 5.602 9 C 0.097 3.903 10 C -0.090 4.090 11 H 0.108 0.892 12 C -0.102 4.102 13 C -0.110 4.110 14 C -0.130 4.130 15 C 0.192 3.808 16 H 0.039 0.961 17 N -0.741 5.741 18 C -0.219 4.219 19 H 0.052 0.948 20 C -0.068 4.068 21 N -0.989 5.989 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.304 1.304 25 H -0.243 1.243 26 C -0.092 4.092 27 H 0.084 0.916 28 C 0.125 3.875 29 C 0.224 3.776 30 C -0.101 4.101 31 N -0.535 5.535 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.196 0.804 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.067 0.933 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.656 -11.364 7.695 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 N -0.249 5.249 4 C 0.027 3.973 5 C -0.264 4.264 6 C 0.375 3.625 7 O -0.439 6.439 8 N -0.334 5.334 9 C -0.025 4.025 10 C -0.109 4.109 11 H 0.126 0.874 12 C -0.140 4.140 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.084 3.916 16 H 0.057 0.943 17 N -0.384 5.384 18 C -0.351 4.351 19 H 0.070 0.930 20 C -0.259 4.259 21 N -0.640 5.640 22 Si 0.779 3.221 23 H -0.205 1.205 24 H -0.231 1.231 25 H -0.167 1.167 26 C -0.112 4.112 27 H 0.102 0.898 28 C 0.002 3.998 29 C 0.078 3.922 30 C -0.158 4.158 31 N -0.251 5.251 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.213 0.787 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.201 0.799 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.174 -11.898 8.092 30.748 hybrid contribution 1.362 0.953 -0.543 1.749 sum -25.812 -10.945 7.549 29.035 Atomic orbital electron populations 1.20791 0.82824 1.05441 1.05392 1.24254 1.00026 0.83003 0.86315 1.68451 1.09678 1.30182 1.16626 1.23991 0.89499 0.98236 0.85600 1.21429 0.94936 0.97132 1.12935 1.17498 0.86010 0.80227 0.78766 1.90794 1.70046 1.37981 1.45034 1.48421 1.07935 1.31502 1.45574 1.23017 0.96538 0.91376 0.91547 1.22389 0.93119 1.00302 0.95057 0.87422 1.21436 0.97214 0.97827 0.97497 1.21342 0.94616 1.01231 0.97560 1.22051 0.98211 0.98373 0.98336 1.19639 0.94272 0.85865 0.91874 0.94305 1.42647 1.03315 1.25563 1.66896 1.18975 0.84784 1.04169 1.27137 0.92961 1.25485 0.98543 1.00047 1.01821 1.69898 1.20421 1.26558 1.47125 0.85454 0.80245 0.79205 0.77167 1.20472 1.23140 1.16709 1.21480 0.94768 0.98600 0.96309 0.89766 1.21784 0.79803 0.98516 0.99712 1.22146 0.89279 0.95955 0.84849 1.20839 0.99446 0.90987 1.04514 1.68328 1.08834 1.30710 1.17187 0.87701 0.88473 0.88223 0.78748 0.88326 0.89197 0.90720 0.92198 0.93102 0.92204 0.94567 0.91493 0.79922 0.93627 0.91312 0.90901 0.88797 0.88674 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.31 71.24 0.73 -0.09 16 2 C 0.33 5.76 7.64 138.71 1.06 6.82 16 3 N -0.53 -9.70 10.32 -186.79 -1.93 -11.63 16 4 C 0.19 3.29 9.48 85.07 0.81 4.10 16 5 C -0.26 -5.19 5.43 -19.91 -0.11 -5.30 16 6 C 0.59 13.61 7.01 86.78 0.61 14.22 16 7 O -0.56 -16.44 15.40 -3.90 -0.06 -16.50 16 8 N -0.60 -12.20 2.85 -813.90 -2.32 -14.52 16 9 C 0.10 1.49 4.48 87.17 0.39 1.88 16 10 C -0.09 -1.81 3.34 -9.50 -0.03 -1.84 16 11 H 0.11 2.12 7.96 -2.39 -0.02 2.10 16 12 C -0.10 -2.18 4.81 30.47 0.15 -2.04 16 13 C -0.11 -3.07 5.84 30.57 0.18 -2.89 16 14 C -0.13 -4.13 5.48 30.64 0.17 -3.96 16 15 C 0.19 6.46 2.50 44.25 0.11 6.57 16 16 H 0.04 1.45 8.07 -2.39 -0.02 1.43 16 17 N -0.74 -31.14 3.98 -326.46 -1.30 -32.44 16 18 C -0.22 -11.90 10.38 84.03 0.87 -11.03 16 19 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.99 -62.60 13.97 21.65 0.30 -62.30 16 22 Si 0.95 43.32 27.73 68.60 1.90 45.22 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 25 H -0.24 -9.56 6.53 99.48 0.65 -8.91 16 26 C -0.09 -2.28 2.20 -11.04 -0.02 -2.31 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 C 0.12 2.88 5.88 86.33 0.51 3.39 16 29 C 0.22 4.64 6.86 42.92 0.29 4.93 16 30 C -0.10 -1.82 8.94 71.23 0.64 -1.19 16 31 N -0.53 -10.69 10.26 -175.03 -1.79 -12.48 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.20 2.32 5.88 -2.91 -0.02 2.30 16 36 H 0.10 1.08 7.03 -2.39 -0.02 1.07 16 37 H 0.09 1.20 7.07 -2.39 -0.02 1.18 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.29 7.16 -2.39 -0.02 1.28 16 40 H 0.05 1.67 7.39 -2.38 -0.02 1.65 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.87 6.75 -2.39 -0.02 1.85 16 44 H 0.37 14.51 5.12 -92.71 -0.47 14.03 16 45 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 46 H 0.07 1.73 6.49 -2.39 -0.02 1.72 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.56 6.87 -2.39 -0.02 1.54 16 Total: -1.00 -71.86 384.89 2.05 -69.81 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.43 Total: 27.00 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.82 Total: 7.84 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -7.04 Total: -133.38 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.06 Total: -16.50 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.90 Total: 45.22 kcal Total: -71.86 2.05 -69.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992849978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.992 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds