Wall clock time and date at job start Wed Apr 1 2020 04:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.64046 * 2 1 4 4 C 1.54323 * 110.72347 * 123.14311 * 2 1 3 5 5 N 1.47018 * 107.27171 * 140.55451 * 4 2 1 6 6 C 1.34779 * 125.64748 * 181.02072 * 5 4 2 7 7 O 1.21279 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99956 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.80261 * 300.51225 * 8 6 5 10 10 C 1.53316 * 109.63565 * 180.02562 * 8 6 5 11 11 C 1.52803 * 108.51512 * 170.48866 * 10 8 6 12 12 C 1.50448 * 110.45702 * 50.97704 * 11 10 8 13 13 N 1.32890 * 118.53103 * 162.51105 * 12 11 10 14 14 C 1.31603 * 121.06190 * 179.78637 * 13 12 11 15 15 N 1.31817 * 121.67341 * 359.97438 * 14 13 12 16 16 C 1.32197 * 120.63808 * 0.11063 * 15 14 13 17 17 C 1.37765 * 122.58027 * 342.46952 * 12 11 10 18 18 C 1.50341 * 122.81149 * 0.40599 * 17 12 11 19 19 C 1.47425 * 108.70428 * 1.28931 * 5 4 2 20 20 C 1.55126 * 104.71947 * 335.55073 * 19 5 4 21 21 H 1.08999 * 110.90468 * 155.27392 * 20 19 5 22 22 N 1.46501 * 111.22942 * 279.17508 * 20 19 5 23 23 C 1.36933 * 120.00085 * 267.21342 * 22 20 19 24 24 H 1.08002 * 119.99866 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99904 * 179.97438 * 23 22 20 26 26 N 1.31612 * 120.00004 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99981 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47043 * 59.99626 * 27 25 23 29 29 H 1.48499 * 109.46832 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.46997 * 299.99809 * 27 25 23 31 31 H 1.09004 * 109.46989 * 298.30801 * 1 2 3 32 32 H 1.09001 * 109.47277 * 58.31179 * 1 2 3 33 33 H 1.08996 * 109.47243 * 178.31290 * 1 2 3 34 34 H 1.09001 * 109.46810 * 181.69085 * 3 2 1 35 35 H 1.09000 * 109.47063 * 301.68817 * 3 2 1 36 36 H 1.08994 * 109.46867 * 61.68835 * 3 2 1 37 37 H 1.08999 * 109.87895 * 21.13467 * 4 2 1 38 38 H 1.08999 * 110.00964 * 260.04757 * 4 2 1 39 39 H 1.09001 * 109.62796 * 290.19851 * 10 8 6 40 40 H 1.09002 * 109.62743 * 50.78084 * 10 8 6 41 41 H 1.09009 * 109.30581 * 171.27686 * 11 10 8 42 42 H 1.09004 * 109.30784 * 290.67184 * 11 10 8 43 43 H 1.07998 * 119.16208 * 179.97438 * 14 13 12 44 44 H 1.07990 * 120.36101 * 179.97438 * 16 15 14 45 45 H 1.08996 * 109.30964 * 222.26085 * 18 17 12 46 46 H 1.08994 * 109.30576 * 102.84692 * 18 17 12 47 47 H 1.08999 * 110.36961 * 94.48211 * 19 5 4 48 48 H 1.08998 * 110.36499 * 216.80557 * 19 5 4 49 49 H 0.96997 * 119.99569 * 87.20355 * 22 20 19 50 50 H 0.96996 * 120.00356 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7415 6 6 3.9924 -2.3810 1.4937 7 8 3.7193 -2.5518 2.6629 8 6 5.1672 -3.0994 0.8815 9 1 4.8287 -3.7216 0.0530 10 6 5.8438 -3.9769 1.9412 11 6 6.8728 -4.8686 1.2479 12 6 7.7798 -4.0445 0.3752 13 7 8.9323 -4.5741 -0.0214 14 6 9.7614 -3.8991 -0.7889 15 7 9.4871 -2.6758 -1.1961 16 6 8.3599 -2.0840 -0.8399 17 6 7.4613 -2.7661 -0.0276 18 6 6.1862 -2.0790 0.3753 19 6 3.4666 -1.2467 -0.6841 20 6 2.0789 -0.7975 -1.2124 21 1 2.1849 -0.1553 -2.0868 22 7 1.2266 -1.9508 -1.5118 23 6 1.2018 -2.4738 -2.7770 24 1 1.8103 -2.0359 -3.5544 25 6 0.3945 -3.5669 -3.0605 26 7 -0.3466 -4.1009 -2.1130 27 14 0.3601 -4.2800 -4.7867 28 1 1.7233 -4.7338 -5.1621 29 1 -0.5738 -5.4339 -4.8271 30 1 -0.0961 -3.2396 -5.7430 31 1 -0.3633 0.4873 0.9048 32 1 -0.3634 0.5398 -0.8745 33 1 -0.3633 -1.0272 -0.0303 34 1 3.1587 1.4097 -0.0303 35 1 1.6922 1.9621 -0.8745 36 1 1.7413 1.9436 0.9047 37 1 1.3130 -1.4731 1.5800 38 1 2.3736 -0.1010 1.9997 39 1 6.3427 -3.3447 2.6758 40 1 5.0956 -4.5968 2.4352 41 1 7.4685 -5.3844 2.0012 42 1 6.3555 -5.6065 0.6346 43 1 10.6900 -4.3591 -1.0927 44 1 8.1399 -1.0815 -1.1758 45 1 5.7727 -1.5532 -0.4853 46 1 6.3988 -1.3594 1.1658 47 1 4.1947 -0.4428 -0.7923 48 1 3.8031 -2.1382 -1.2133 49 1 0.6799 -2.3440 -0.8136 50 1 -0.9105 -4.8650 -2.3109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995885920.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:42 Heat of formation + Delta-G solvation = 15.139872 kcal Electronic energy + Delta-G solvation = -31367.892148 eV Core-core repulsion = 27394.732023 eV Total energy + Delta-G solvation = -3973.160125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.54839 -40.15898 -38.33299 -36.56303 -34.30736 -33.92130 -33.26461 -31.56940 -30.80273 -30.46508 -28.10494 -26.73480 -26.47901 -25.25837 -24.16908 -23.76964 -23.15941 -21.72374 -20.63167 -19.03349 -18.72255 -17.71748 -17.27257 -17.14901 -16.58229 -15.86788 -15.70161 -15.15184 -14.72711 -14.41806 -14.31704 -14.06088 -13.97521 -13.84247 -13.79063 -13.57959 -13.34890 -12.95174 -12.66503 -12.47854 -12.33268 -12.19579 -11.95956 -11.86537 -11.60797 -11.46818 -11.23211 -11.08998 -11.00586 -10.95380 -10.92189 -10.58732 -10.52724 -10.47797 -10.32279 -9.95194 -9.71346 -9.51290 -9.37619 -9.33478 -9.06701 -8.27747 -7.09538 -5.88806 -3.19091 0.73258 0.87569 2.87594 3.27633 3.35678 3.40926 3.42298 3.57057 3.83203 4.02210 4.24861 4.37376 4.45154 4.48289 4.62595 4.78290 4.90251 5.03693 5.09533 5.13261 5.16894 5.26742 5.30052 5.35844 5.37130 5.48747 5.55124 5.63259 5.66595 5.68242 5.70287 5.83047 5.86474 5.94387 6.00351 6.02679 6.11795 6.12744 6.16518 6.21115 6.26751 6.30043 6.36670 6.51083 6.60711 6.72548 6.81236 6.89480 7.57583 7.86821 7.91335 8.28592 8.43984 9.40670 9.95464 10.29979 11.32851 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.003788 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.306188 B = 7390.365130 C = 8814.371052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.122 3.878 5 N -0.599 5.599 6 C 0.536 3.464 7 O -0.551 6.551 8 C -0.104 4.104 9 H 0.106 0.894 10 C -0.097 4.097 11 C -0.075 4.075 12 C 0.183 3.817 13 N -0.522 5.522 14 C 0.286 3.714 15 N -0.524 5.524 16 C 0.151 3.849 17 C -0.174 4.174 18 C -0.067 4.067 19 C 0.066 3.934 20 C 0.178 3.822 21 H 0.074 0.926 22 N -0.707 5.707 23 C -0.250 4.250 24 H 0.071 0.929 25 C -0.005 4.005 26 N -0.927 5.927 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.194 0.806 44 H 0.169 0.831 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.387 0.613 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.814 6.953 5.572 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.324 3.676 7 O -0.430 6.430 8 C -0.125 4.125 9 H 0.124 0.876 10 C -0.135 4.135 11 C -0.112 4.112 12 C 0.039 3.961 13 N -0.236 5.236 14 C -0.002 4.002 15 N -0.237 5.237 16 C -0.016 4.016 17 C -0.178 4.178 18 C -0.106 4.106 19 C -0.061 4.061 20 C 0.066 3.934 21 H 0.092 0.908 22 N -0.347 5.347 23 C -0.380 4.380 24 H 0.089 0.911 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.223 0.777 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.552 6.288 5.761 16.866 hybrid contribution -0.860 -0.267 -0.701 1.142 sum 13.692 6.021 5.059 15.789 Atomic orbital electron populations 1.21641 0.92877 1.03341 1.00578 1.21932 0.96802 0.94798 0.95653 1.21756 1.00545 0.94908 1.01653 1.21974 0.87773 0.94184 0.96140 1.48306 1.29275 1.43709 1.11805 1.19964 0.83245 0.78634 0.85782 1.90667 1.71586 1.64182 1.16567 1.21284 0.93492 0.97525 1.00239 0.87647 1.21412 0.97551 0.97883 0.96687 1.20499 0.95436 0.97356 0.97935 1.21401 0.91258 0.91120 0.92328 1.68395 1.03984 1.38086 1.13112 1.24871 0.98085 0.87363 0.89864 1.68411 1.19803 1.11992 1.23511 1.23281 0.88066 0.99596 0.90652 1.21125 0.99233 0.96529 1.00879 1.20409 0.90520 0.97223 1.02422 1.23563 1.01352 1.00461 0.80686 1.21385 0.88332 0.89695 0.94038 0.90850 1.42355 1.49428 1.32622 1.10307 1.19166 1.21506 1.09985 0.87390 0.91093 1.24733 0.99287 0.98666 0.97526 1.69641 1.30464 1.25545 1.31763 0.86309 0.77313 0.78556 0.84209 1.21278 1.21669 1.21148 0.93770 0.92309 0.90957 0.92812 0.92267 0.92815 0.91550 0.92268 0.90900 0.89269 0.88773 0.88725 0.78932 0.81437 0.88802 0.89643 0.92473 0.90224 0.77731 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.15 37.16 0.30 -1.63 16 2 C -0.09 -1.30 0.80 -152.67 -0.12 -1.42 16 3 C -0.13 -1.49 8.44 37.16 0.31 -1.18 16 4 C 0.12 1.89 6.03 -3.07 -0.02 1.87 16 5 N -0.60 -9.35 3.32 -170.39 -0.57 -9.91 16 6 C 0.54 8.60 7.19 -10.98 -0.08 8.52 16 7 O -0.55 -10.49 16.18 5.56 0.09 -10.40 16 8 C -0.10 -1.34 1.89 -91.69 -0.17 -1.51 16 9 H 0.11 1.45 7.80 -51.93 -0.41 1.05 16 10 C -0.10 -1.13 4.70 -26.67 -0.13 -1.26 16 11 C -0.07 -0.79 5.95 -28.11 -0.17 -0.96 16 12 C 0.18 2.18 6.62 -82.43 -0.55 1.63 16 13 N -0.52 -6.42 10.32 -11.00 -0.11 -6.54 16 14 C 0.29 3.16 12.29 -92.30 -1.13 2.03 16 15 N -0.52 -6.09 10.44 -14.54 -0.15 -6.24 16 16 C 0.15 1.59 10.94 -17.10 -0.19 1.40 16 17 C -0.17 -1.91 5.73 -104.68 -0.60 -2.51 16 18 C -0.07 -0.71 4.72 -28.14 -0.13 -0.84 16 19 C 0.07 0.97 4.56 -2.41 -0.01 0.96 16 20 C 0.18 3.02 2.96 -65.66 -0.19 2.82 16 21 H 0.07 1.22 7.99 -51.93 -0.42 0.81 16 22 N -0.71 -15.70 4.57 -51.24 -0.23 -15.94 16 23 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 26 N -0.93 -26.53 13.06 55.49 0.72 -25.80 16 27 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 34 H 0.05 0.57 7.44 -51.93 -0.39 0.18 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.17 7.82 -51.93 -0.41 0.76 16 38 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 39 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.09 1.12 7.82 -51.93 -0.41 0.72 16 41 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.09 0.93 5.44 -51.93 -0.28 0.65 16 46 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 47 H 0.06 0.68 6.87 -51.93 -0.36 0.32 16 48 H 0.08 1.29 7.29 -51.93 -0.38 0.92 16 49 H 0.39 9.48 6.32 -40.82 -0.26 9.22 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -31.09 391.50 -10.30 -41.38 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.80 Total: 10.06 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.12 Total: 1.24 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.34 Total: -64.43 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.09 -10.30 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995885920.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.522 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds