Wall clock time and date at job start Wed Apr 1 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.64046 * 2 1 4 4 C 1.54323 * 110.72347 * 123.14311 * 2 1 3 5 5 N 1.47018 * 107.27171 * 140.55451 * 4 2 1 6 6 C 1.34779 * 125.64748 * 181.02072 * 5 4 2 7 7 O 1.21279 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99956 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.80261 * 300.51225 * 8 6 5 10 10 C 1.53316 * 109.63565 * 180.02562 * 8 6 5 11 11 C 1.52803 * 108.51512 * 170.48866 * 10 8 6 12 12 C 1.50448 * 110.45702 * 50.97704 * 11 10 8 13 13 N 1.32890 * 118.53103 * 162.51105 * 12 11 10 14 14 C 1.31603 * 121.06190 * 179.78637 * 13 12 11 15 15 N 1.31817 * 121.67341 * 359.97438 * 14 13 12 16 16 C 1.32197 * 120.63808 * 0.11063 * 15 14 13 17 17 C 1.37765 * 122.58027 * 342.46952 * 12 11 10 18 18 C 1.50341 * 122.81149 * 0.40599 * 17 12 11 19 19 C 1.47425 * 108.70428 * 1.28931 * 5 4 2 20 20 C 1.55126 * 104.71947 * 335.55073 * 19 5 4 21 21 H 1.08999 * 110.90468 * 155.27392 * 20 19 5 22 22 N 1.46501 * 111.22942 * 279.17508 * 20 19 5 23 23 C 1.36933 * 120.00085 * 267.21342 * 22 20 19 24 24 H 1.08002 * 119.99866 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99904 * 179.97438 * 23 22 20 26 26 N 1.31612 * 120.00004 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99981 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47043 * 59.99626 * 27 25 23 29 29 H 1.48499 * 109.46832 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.46997 * 299.99809 * 27 25 23 31 31 H 1.09004 * 109.46989 * 298.30801 * 1 2 3 32 32 H 1.09001 * 109.47277 * 58.31179 * 1 2 3 33 33 H 1.08996 * 109.47243 * 178.31290 * 1 2 3 34 34 H 1.09001 * 109.46810 * 181.69085 * 3 2 1 35 35 H 1.09000 * 109.47063 * 301.68817 * 3 2 1 36 36 H 1.08994 * 109.46867 * 61.68835 * 3 2 1 37 37 H 1.08999 * 109.87895 * 21.13467 * 4 2 1 38 38 H 1.08999 * 110.00964 * 260.04757 * 4 2 1 39 39 H 1.09001 * 109.62796 * 290.19851 * 10 8 6 40 40 H 1.09002 * 109.62743 * 50.78084 * 10 8 6 41 41 H 1.09009 * 109.30581 * 171.27686 * 11 10 8 42 42 H 1.09004 * 109.30784 * 290.67184 * 11 10 8 43 43 H 1.07998 * 119.16208 * 179.97438 * 14 13 12 44 44 H 1.07990 * 120.36101 * 179.97438 * 16 15 14 45 45 H 1.08996 * 109.30964 * 222.26085 * 18 17 12 46 46 H 1.08994 * 109.30576 * 102.84692 * 18 17 12 47 47 H 1.08999 * 110.36961 * 94.48211 * 19 5 4 48 48 H 1.08998 * 110.36499 * 216.80557 * 19 5 4 49 49 H 0.96997 * 119.99569 * 87.20355 * 22 20 19 50 50 H 0.96996 * 120.00356 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7415 6 6 3.9924 -2.3810 1.4937 7 8 3.7193 -2.5518 2.6629 8 6 5.1672 -3.0994 0.8815 9 1 4.8287 -3.7216 0.0530 10 6 5.8438 -3.9769 1.9412 11 6 6.8728 -4.8686 1.2479 12 6 7.7798 -4.0445 0.3752 13 7 8.9323 -4.5741 -0.0214 14 6 9.7614 -3.8991 -0.7889 15 7 9.4871 -2.6758 -1.1961 16 6 8.3599 -2.0840 -0.8399 17 6 7.4613 -2.7661 -0.0276 18 6 6.1862 -2.0790 0.3753 19 6 3.4666 -1.2467 -0.6841 20 6 2.0789 -0.7975 -1.2124 21 1 2.1849 -0.1553 -2.0868 22 7 1.2266 -1.9508 -1.5118 23 6 1.2018 -2.4738 -2.7770 24 1 1.8103 -2.0359 -3.5544 25 6 0.3945 -3.5669 -3.0605 26 7 -0.3466 -4.1009 -2.1130 27 14 0.3601 -4.2800 -4.7867 28 1 1.7233 -4.7338 -5.1621 29 1 -0.5738 -5.4339 -4.8271 30 1 -0.0961 -3.2396 -5.7430 31 1 -0.3633 0.4873 0.9048 32 1 -0.3634 0.5398 -0.8745 33 1 -0.3633 -1.0272 -0.0303 34 1 3.1587 1.4097 -0.0303 35 1 1.6922 1.9621 -0.8745 36 1 1.7413 1.9436 0.9047 37 1 1.3130 -1.4731 1.5800 38 1 2.3736 -0.1010 1.9997 39 1 6.3427 -3.3447 2.6758 40 1 5.0956 -4.5968 2.4352 41 1 7.4685 -5.3844 2.0012 42 1 6.3555 -5.6065 0.6346 43 1 10.6900 -4.3591 -1.0927 44 1 8.1399 -1.0815 -1.1758 45 1 5.7727 -1.5532 -0.4853 46 1 6.3988 -1.3594 1.1658 47 1 4.1947 -0.4428 -0.7923 48 1 3.8031 -2.1382 -1.2133 49 1 0.6799 -2.3440 -0.8136 50 1 -0.9105 -4.8650 -2.3109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995885920.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:41 Heat of formation + Delta-G solvation = -2.798740 kcal Electronic energy + Delta-G solvation = -31368.670025 eV Core-core repulsion = 27394.732023 eV Total energy + Delta-G solvation = -3973.938002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.42231 -41.37279 -39.56534 -37.61258 -35.69121 -35.16293 -34.50907 -32.57081 -32.45199 -31.39724 -29.49295 -27.93403 -27.63727 -26.22251 -25.64690 -24.93268 -24.04520 -23.07078 -21.65025 -20.29856 -19.91863 -19.05461 -18.63179 -18.11164 -17.62856 -17.17656 -16.94753 -16.35420 -15.97025 -15.76799 -15.53297 -15.24882 -15.06919 -14.90449 -14.82875 -14.62976 -14.44810 -14.31169 -13.80151 -13.62436 -13.54304 -13.26868 -13.18722 -12.93255 -12.86366 -12.76678 -12.76363 -12.58051 -12.21963 -12.17074 -12.05456 -11.97199 -11.86579 -11.73841 -11.43190 -11.38600 -11.25854 -10.92806 -10.73824 -10.21298 -10.18055 -9.62158 -8.92030 -7.90968 -5.18314 -0.08871 0.04429 1.49440 1.50064 1.56064 1.61204 2.06581 2.57609 2.74316 3.00682 3.23848 3.34707 3.40744 3.45270 3.53806 3.62108 3.74762 3.88786 3.90543 3.95955 4.11303 4.18906 4.26974 4.31152 4.38352 4.41099 4.51056 4.55658 4.61460 4.67389 4.74835 4.78708 4.81856 4.85148 4.91473 4.92877 5.04212 5.05609 5.06966 5.13650 5.16803 5.19096 5.35861 5.39110 5.45660 5.48714 5.56020 5.64951 5.98708 6.29872 6.60873 7.09007 7.16613 7.37609 8.13831 8.35369 9.32098 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.003788 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.306188 B = 7390.365130 C = 8814.371052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.530 3.470 7 O -0.587 6.587 8 C -0.099 4.099 9 H 0.094 0.906 10 C -0.090 4.090 11 C -0.068 4.068 12 C 0.167 3.833 13 N -0.541 5.541 14 C 0.280 3.720 15 N -0.538 5.538 16 C 0.153 3.847 17 C -0.178 4.178 18 C -0.056 4.056 19 C 0.076 3.924 20 C 0.165 3.835 21 H 0.085 0.915 22 N -0.720 5.720 23 C -0.232 4.232 24 H 0.084 0.916 25 C -0.071 4.071 26 N -0.969 5.969 27 Si 0.963 3.037 28 H -0.281 1.281 29 H -0.305 1.305 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.220 0.780 44 H 0.199 0.801 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.065 0.935 49 H 0.372 0.628 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.073 9.454 4.699 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.182 4.182 4 C -0.002 4.002 5 N -0.332 5.332 6 C 0.319 3.681 7 O -0.468 6.468 8 C -0.120 4.120 9 H 0.112 0.888 10 C -0.128 4.128 11 C -0.105 4.105 12 C 0.024 3.976 13 N -0.255 5.255 14 C -0.007 4.007 15 N -0.251 5.251 16 C -0.014 4.014 17 C -0.182 4.182 18 C -0.094 4.094 19 C -0.049 4.049 20 C 0.054 3.946 21 H 0.103 0.897 22 N -0.359 5.359 23 C -0.364 4.364 24 H 0.102 0.898 25 C -0.263 4.263 26 N -0.620 5.620 27 Si 0.793 3.207 28 H -0.207 1.207 29 H -0.232 1.232 30 H -0.203 1.203 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.236 0.764 44 H 0.215 0.785 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.205 0.795 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.858 8.846 4.863 19.649 hybrid contribution -1.541 -0.972 -0.386 1.862 sum 15.317 7.874 4.477 17.795 Atomic orbital electron populations 1.21574 0.93879 1.00976 1.01606 1.21880 0.95961 0.96495 0.93551 1.21723 1.01442 0.92105 1.02897 1.21991 0.87155 0.93885 0.97129 1.48408 1.29045 1.43571 1.12140 1.20525 0.83820 0.78279 0.85451 1.90646 1.72688 1.65229 1.18218 1.21246 0.93012 0.97864 0.99866 0.88799 1.21325 0.97333 0.97714 0.96476 1.20425 0.95097 0.97007 0.98013 1.21578 0.91503 0.91811 0.92749 1.68417 1.04417 1.38704 1.13958 1.25433 0.98692 0.87376 0.89215 1.68496 1.20383 1.12281 1.23975 1.23776 0.87356 1.00604 0.89692 1.21159 0.99525 0.96327 1.01227 1.20335 0.89510 0.96489 1.03065 1.23474 1.00584 1.01212 0.79667 1.21719 0.88760 0.88414 0.95662 0.89722 1.42524 1.50343 1.34018 1.08993 1.19604 1.19426 1.08704 0.88648 0.89841 1.25420 1.00327 1.00096 1.00478 1.69809 1.32323 1.26324 1.33539 0.85370 0.76977 0.77468 0.80878 1.20697 1.23170 1.20292 0.91639 0.92386 0.94905 0.91221 0.91351 0.91367 0.94750 0.90692 0.90621 0.90748 0.87807 0.88976 0.76426 0.78474 0.87614 0.88512 0.87969 0.91650 0.79498 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 8.15 71.98 0.59 -3.10 16 2 C -0.08 -2.08 0.80 -50.99 -0.04 -2.12 16 3 C -0.12 -2.32 8.44 71.98 0.61 -1.71 16 4 C 0.12 3.64 6.03 86.73 0.52 4.17 16 5 N -0.60 -17.99 3.32 -811.37 -2.70 -20.69 16 6 C 0.53 16.76 7.19 87.66 0.63 17.39 16 7 O -0.59 -22.54 16.18 -3.03 -0.05 -22.59 16 8 C -0.10 -2.45 1.89 -11.49 -0.02 -2.48 16 9 H 0.09 2.58 7.80 -2.39 -0.02 2.56 16 10 C -0.09 -2.09 4.70 30.63 0.14 -1.95 16 11 C -0.07 -1.41 5.95 29.70 0.18 -1.24 16 12 C 0.17 3.76 6.62 42.21 0.28 4.03 16 13 N -0.54 -12.59 10.32 -188.72 -1.95 -14.53 16 14 C 0.28 5.67 12.29 180.93 2.22 7.90 16 15 N -0.54 -11.20 10.44 -199.93 -2.09 -13.29 16 16 C 0.15 2.75 10.94 84.83 0.93 3.68 16 17 C -0.18 -3.53 5.73 -19.90 -0.11 -3.64 16 18 C -0.06 -1.03 4.72 29.68 0.14 -0.89 16 19 C 0.08 2.04 4.56 86.93 0.40 2.43 16 20 C 0.16 5.26 2.96 46.46 0.14 5.40 16 21 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 22 N -0.72 -32.08 4.57 -316.02 -1.44 -33.52 16 23 C -0.23 -11.60 9.96 84.03 0.84 -10.76 16 24 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 26 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 27 Si 0.96 44.22 29.55 68.60 2.03 46.25 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.24 6.34 -2.39 -0.02 1.23 16 34 H 0.07 1.11 7.44 -2.39 -0.02 1.09 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16 38 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 39 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.07 1.94 7.82 -2.39 -0.02 1.92 16 41 H 0.10 1.93 8.14 -2.38 -0.02 1.92 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.22 2.92 8.06 -2.91 -0.02 2.90 16 44 H 0.20 2.18 8.06 -2.92 -0.02 2.16 16 45 H 0.11 1.69 5.44 -2.39 -0.01 1.67 16 46 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 47 H 0.10 1.90 6.87 -2.39 -0.02 1.89 16 48 H 0.07 1.99 7.29 -2.39 -0.02 1.98 16 49 H 0.37 18.88 6.32 -92.71 -0.59 18.29 16 50 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.47 391.50 2.35 -67.12 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.37 Total: 34.75 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 7.90 Total: 13.74 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -7.89 Total: -139.26 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.47 2.35 -67.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995885920.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.320 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds