Wall clock time and date at job start Wed Apr 1 2020 04:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.91610 * 2 1 4 4 C 1.54909 * 111.00150 * 236.10167 * 2 1 3 5 5 N 1.47429 * 104.83234 * 204.91288 * 4 2 1 6 6 C 1.34778 * 125.64818 * 204.09405 * 5 4 2 7 7 O 1.21281 * 120.00062 * 354.78240 * 6 5 4 8 8 C 1.50704 * 119.99524 * 174.78254 * 6 5 4 9 9 H 1.08998 * 109.63334 * 34.80118 * 8 6 5 10 10 C 1.53315 * 109.62884 * 155.20274 * 8 6 5 11 11 C 1.52728 * 108.56053 * 189.27415 * 10 8 6 12 12 C 1.50448 * 110.58803 * 309.27166 * 11 10 8 13 13 N 1.32891 * 118.52850 * 197.28190 * 12 11 10 14 14 C 1.31603 * 121.06493 * 180.54947 * 13 12 11 15 15 N 1.31814 * 121.66565 * 359.97438 * 14 13 12 16 16 C 1.32188 * 120.64518 * 359.88018 * 15 14 13 17 17 C 1.37768 * 122.58206 * 17.61927 * 12 11 10 18 18 C 1.50333 * 122.80001 * 359.30857 * 17 12 11 19 19 C 1.47023 * 108.70100 * 24.12951 * 5 4 2 20 20 C 1.54321 * 107.26982 * 358.94233 * 19 5 4 21 21 H 1.09003 * 110.71890 * 219.44241 * 20 19 5 22 22 N 1.46497 * 110.72330 * 96.17071 * 20 19 5 23 23 C 1.36942 * 120.00117 * 86.45045 * 22 20 19 24 24 H 1.07999 * 119.99965 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99949 * 180.02562 * 23 22 20 26 26 N 1.31624 * 120.00310 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00182 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47157 * 89.99888 * 27 25 23 29 29 H 1.48497 * 109.47626 * 210.00057 * 27 25 23 30 30 H 1.48508 * 109.47074 * 329.99947 * 27 25 23 31 31 H 1.09001 * 109.47104 * 296.09261 * 1 2 3 32 32 H 1.08996 * 109.47690 * 56.09413 * 1 2 3 33 33 H 1.09000 * 109.47365 * 176.09800 * 1 2 3 34 34 H 1.09001 * 109.46819 * 183.90083 * 3 2 1 35 35 H 1.08994 * 109.47056 * 303.90716 * 3 2 1 36 36 H 1.08999 * 109.46551 * 63.90631 * 3 2 1 37 37 H 1.09003 * 110.36969 * 86.07791 * 4 2 1 38 38 H 1.08995 * 110.46521 * 323.80327 * 4 2 1 39 39 H 1.08995 * 109.62955 * 309.18194 * 10 8 6 40 40 H 1.08991 * 109.62853 * 69.76748 * 10 8 6 41 41 H 1.08989 * 109.34483 * 188.85987 * 11 10 8 42 42 H 1.09001 * 109.12170 * 69.54075 * 11 10 8 43 43 H 1.07997 * 119.16764 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.36646 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.30909 * 257.29545 * 18 17 12 46 46 H 1.09003 * 109.14856 * 137.79610 * 18 17 12 47 47 H 1.08995 * 109.88466 * 239.52294 * 19 5 4 48 48 H 1.09006 * 109.87810 * 118.35572 * 19 5 4 49 49 H 0.97003 * 120.00154 * 266.45224 * 22 20 19 50 50 H 0.96992 * 120.00459 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0851 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4476 -1.5614 -1.5943 7 8 4.2739 -1.5919 -2.7942 8 6 5.8045 -1.8797 -1.0209 9 1 5.6875 -2.3957 -0.0680 10 6 6.5801 -2.7712 -1.9978 11 6 7.8460 -3.2678 -1.3024 12 6 8.5996 -2.1179 -0.6912 13 7 9.8727 -2.2999 -0.3563 14 6 10.5758 -1.3316 0.1915 15 7 10.0520 -0.1458 0.4303 16 6 8.7923 0.1090 0.1211 17 6 8.0195 -0.8899 -0.4602 18 6 6.5898 -0.5855 -0.8113 19 6 3.4674 -1.2741 0.6958 20 6 2.0861 -0.8080 1.2021 21 1 2.1922 -0.1701 2.0795 22 7 1.2268 -1.9575 1.4960 23 6 1.2816 -2.5565 2.7263 24 1 1.9580 -2.1812 3.4800 25 6 0.4678 -3.6460 3.0046 26 7 -0.3563 -4.1037 2.0859 27 14 0.5419 -4.4627 4.6829 28 1 -0.4368 -3.8145 5.5925 29 1 0.2121 -5.9042 4.5471 30 1 1.9095 -4.3185 5.2436 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 3.1636 1.4025 -0.0699 35 1 1.6704 1.9732 -0.8529 36 1 1.7836 1.9299 0.9229 37 1 2.1559 -0.1719 -2.0838 38 1 1.4524 -1.6703 -1.4045 39 1 5.9618 -3.6205 -2.2884 40 1 6.8539 -2.1946 -2.8812 41 1 8.4836 -3.7707 -2.0293 42 1 7.5698 -3.9743 -0.5197 43 1 11.6080 -1.5131 0.4519 44 1 8.3678 1.0823 0.3184 45 1 6.5615 0.0057 -1.7267 46 1 6.1359 -0.0159 -0.0003 47 1 4.2425 -0.5998 1.0598 48 1 3.6650 -2.2895 1.0398 49 1 0.6190 -2.2944 0.8192 50 1 -0.9252 -4.8647 2.2805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995885926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:49 Heat of formation + Delta-G solvation = 13.703539 kcal Electronic energy + Delta-G solvation = -31066.650828 eV Core-core repulsion = 27093.428418 eV Total energy + Delta-G solvation = -3973.222409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.61347 -40.18837 -38.40136 -36.61171 -34.31852 -33.98943 -33.23512 -31.67350 -30.82659 -30.54783 -28.00753 -26.81406 -26.61836 -25.27281 -24.25363 -23.77510 -23.25464 -21.72120 -20.70686 -19.04140 -18.67370 -17.74679 -17.33792 -17.19262 -16.74517 -15.82800 -15.71461 -15.18724 -14.79825 -14.45994 -14.31088 -14.20941 -14.04222 -13.93627 -13.84655 -13.59030 -13.30880 -12.99877 -12.66438 -12.54074 -12.39207 -12.30106 -11.93946 -11.86435 -11.67812 -11.54663 -11.33731 -11.13136 -11.05503 -11.03167 -10.94713 -10.63997 -10.60540 -10.47704 -10.29379 -9.90003 -9.73113 -9.58583 -9.45115 -9.40795 -9.05145 -8.29300 -7.12204 -5.89264 -3.19618 0.65670 0.80241 2.76107 3.21070 3.35575 3.41265 3.43110 3.49926 3.75866 3.95407 4.17012 4.34741 4.38844 4.47107 4.54328 4.69416 4.85045 5.01899 5.03411 5.07480 5.17582 5.19153 5.22580 5.29284 5.34898 5.41012 5.54078 5.55999 5.61583 5.64217 5.69071 5.79298 5.84009 5.88783 5.90739 6.04727 6.06482 6.14133 6.16355 6.19318 6.22318 6.30439 6.34239 6.51590 6.59754 6.71715 6.73976 6.86110 7.58308 7.82716 7.84310 8.28385 8.36231 9.40614 9.94987 10.29509 11.32684 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.003235 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.628581 B = 8654.555228 C = 9826.421093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.121 3.879 5 N -0.602 5.602 6 C 0.533 3.467 7 O -0.551 6.551 8 C -0.105 4.105 9 H 0.098 0.902 10 C -0.098 4.098 11 C -0.074 4.074 12 C 0.184 3.816 13 N -0.521 5.521 14 C 0.287 3.713 15 N -0.523 5.523 16 C 0.152 3.848 17 C -0.175 4.175 18 C -0.059 4.059 19 C 0.071 3.929 20 C 0.179 3.821 21 H 0.069 0.931 22 N -0.712 5.712 23 C -0.248 4.248 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.928 5.928 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.195 0.805 44 H 0.169 0.831 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.387 0.613 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.469 9.212 -6.027 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.187 4.187 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.321 3.679 7 O -0.430 6.430 8 C -0.126 4.126 9 H 0.116 0.884 10 C -0.137 4.137 11 C -0.112 4.112 12 C 0.040 3.960 13 N -0.235 5.235 14 C -0.001 4.001 15 N -0.237 5.237 16 C -0.016 4.016 17 C -0.179 4.179 18 C -0.097 4.097 19 C -0.055 4.055 20 C 0.067 3.933 21 H 0.087 0.913 22 N -0.353 5.353 23 C -0.379 4.379 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.223 0.777 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.407 8.902 -6.271 18.866 hybrid contribution -0.905 -0.548 0.727 1.283 sum 14.502 8.353 -5.545 17.630 Atomic orbital electron populations 1.21577 0.92783 1.02911 1.01063 1.22010 0.96618 0.94774 0.95646 1.21679 1.00494 0.94862 1.01628 1.22269 0.83018 0.98052 0.96844 1.48440 1.11859 1.65320 1.07794 1.19989 0.85020 0.76865 0.86058 1.90674 1.84098 1.53281 1.14913 1.21294 0.92434 0.97550 1.01339 0.88375 1.21409 0.94649 0.99971 0.97647 1.20468 0.95657 0.94381 1.00697 1.21382 0.89898 0.93757 0.91012 1.68399 1.07189 1.34939 1.12998 1.24887 1.00280 0.84072 0.90839 1.68411 1.13159 1.23152 1.18963 1.23280 0.89065 0.98938 0.90286 1.21112 0.98682 0.95796 1.02303 1.20201 0.89323 0.97066 1.03122 1.23311 1.01564 1.02065 0.78600 1.21206 0.88194 0.89617 0.94276 0.91271 1.42455 1.45428 1.32708 1.14704 1.19202 1.18693 1.09450 0.90546 0.91049 1.24739 0.98902 0.98831 0.97864 1.69649 1.27247 1.27507 1.33129 0.86221 0.77592 0.78749 0.83752 1.21624 1.21762 1.20729 0.92074 0.93615 0.91194 0.92919 0.92815 0.92305 0.91321 0.91279 0.89718 0.90418 0.88677 0.88762 0.78871 0.81433 0.89296 0.89388 0.92843 0.90477 0.77710 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.22 37.16 0.31 -1.58 16 2 C -0.09 -1.29 0.83 -152.36 -0.13 -1.41 16 3 C -0.13 -1.52 8.57 37.16 0.32 -1.20 16 4 C 0.12 1.88 5.79 -2.53 -0.01 1.86 16 5 N -0.60 -9.19 3.31 -170.52 -0.56 -9.76 16 6 C 0.53 8.03 6.93 -10.98 -0.08 7.96 16 7 O -0.55 -9.95 16.58 5.56 0.09 -9.86 16 8 C -0.10 -1.22 2.09 -91.69 -0.19 -1.41 16 9 H 0.10 1.16 7.28 -51.93 -0.38 0.78 16 10 C -0.10 -1.06 4.67 -26.71 -0.12 -1.19 16 11 C -0.07 -0.72 5.95 -28.14 -0.17 -0.89 16 12 C 0.18 2.02 6.63 -82.43 -0.55 1.48 16 13 N -0.52 -6.00 10.32 -11.00 -0.11 -6.11 16 14 C 0.29 2.95 12.29 -92.30 -1.13 1.82 16 15 N -0.52 -5.68 10.44 -14.54 -0.15 -5.83 16 16 C 0.15 1.46 10.93 -17.11 -0.19 1.28 16 17 C -0.17 -1.77 5.74 -104.68 -0.60 -2.37 16 18 C -0.06 -0.57 5.03 -28.15 -0.14 -0.71 16 19 C 0.07 1.08 5.52 -3.06 -0.02 1.07 16 20 C 0.18 3.06 2.86 -66.10 -0.19 2.88 16 21 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 22 N -0.71 -15.81 4.61 -51.66 -0.24 -16.04 16 23 C -0.25 -6.26 9.98 -15.06 -0.15 -6.41 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 27 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 34 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 38 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 39 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.09 0.84 8.14 -51.94 -0.42 0.42 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 46 H 0.09 0.76 7.56 -51.93 -0.39 0.37 16 47 H 0.05 0.68 7.57 -51.93 -0.39 0.29 16 48 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 49 H 0.39 9.32 6.10 -40.82 -0.25 9.07 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -30.89 396.89 -10.44 -41.33 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.00 Total: 8.93 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.14 Total: 0.88 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.34 Total: -63.45 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.89 -10.44 -41.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995885926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.030 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds