Wall clock time and date at job start Wed Apr 1 2020 04:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.91610 * 2 1 4 4 C 1.54909 * 111.00150 * 236.10167 * 2 1 3 5 5 N 1.47429 * 104.83234 * 204.91288 * 4 2 1 6 6 C 1.34778 * 125.64818 * 204.09405 * 5 4 2 7 7 O 1.21281 * 120.00062 * 354.78240 * 6 5 4 8 8 C 1.50704 * 119.99524 * 174.78254 * 6 5 4 9 9 H 1.08998 * 109.63334 * 34.80118 * 8 6 5 10 10 C 1.53315 * 109.62884 * 155.20274 * 8 6 5 11 11 C 1.52728 * 108.56053 * 189.27415 * 10 8 6 12 12 C 1.50448 * 110.58803 * 309.27166 * 11 10 8 13 13 N 1.32891 * 118.52850 * 197.28190 * 12 11 10 14 14 C 1.31603 * 121.06493 * 180.54947 * 13 12 11 15 15 N 1.31814 * 121.66565 * 359.97438 * 14 13 12 16 16 C 1.32188 * 120.64518 * 359.88018 * 15 14 13 17 17 C 1.37768 * 122.58206 * 17.61927 * 12 11 10 18 18 C 1.50333 * 122.80001 * 359.30857 * 17 12 11 19 19 C 1.47023 * 108.70100 * 24.12951 * 5 4 2 20 20 C 1.54321 * 107.26982 * 358.94233 * 19 5 4 21 21 H 1.09003 * 110.71890 * 219.44241 * 20 19 5 22 22 N 1.46497 * 110.72330 * 96.17071 * 20 19 5 23 23 C 1.36942 * 120.00117 * 86.45045 * 22 20 19 24 24 H 1.07999 * 119.99965 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99949 * 180.02562 * 23 22 20 26 26 N 1.31624 * 120.00310 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00182 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47157 * 89.99888 * 27 25 23 29 29 H 1.48497 * 109.47626 * 210.00057 * 27 25 23 30 30 H 1.48508 * 109.47074 * 329.99947 * 27 25 23 31 31 H 1.09001 * 109.47104 * 296.09261 * 1 2 3 32 32 H 1.08996 * 109.47690 * 56.09413 * 1 2 3 33 33 H 1.09000 * 109.47365 * 176.09800 * 1 2 3 34 34 H 1.09001 * 109.46819 * 183.90083 * 3 2 1 35 35 H 1.08994 * 109.47056 * 303.90716 * 3 2 1 36 36 H 1.08999 * 109.46551 * 63.90631 * 3 2 1 37 37 H 1.09003 * 110.36969 * 86.07791 * 4 2 1 38 38 H 1.08995 * 110.46521 * 323.80327 * 4 2 1 39 39 H 1.08995 * 109.62955 * 309.18194 * 10 8 6 40 40 H 1.08991 * 109.62853 * 69.76748 * 10 8 6 41 41 H 1.08989 * 109.34483 * 188.85987 * 11 10 8 42 42 H 1.09001 * 109.12170 * 69.54075 * 11 10 8 43 43 H 1.07997 * 119.16764 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.36646 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.30909 * 257.29545 * 18 17 12 46 46 H 1.09003 * 109.14856 * 137.79610 * 18 17 12 47 47 H 1.08995 * 109.88466 * 239.52294 * 19 5 4 48 48 H 1.09006 * 109.87810 * 118.35572 * 19 5 4 49 49 H 0.97003 * 120.00154 * 266.45224 * 22 20 19 50 50 H 0.96992 * 120.00459 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0851 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4476 -1.5614 -1.5943 7 8 4.2739 -1.5919 -2.7942 8 6 5.8045 -1.8797 -1.0209 9 1 5.6875 -2.3957 -0.0680 10 6 6.5801 -2.7712 -1.9978 11 6 7.8460 -3.2678 -1.3024 12 6 8.5996 -2.1179 -0.6912 13 7 9.8727 -2.2999 -0.3563 14 6 10.5758 -1.3316 0.1915 15 7 10.0520 -0.1458 0.4303 16 6 8.7923 0.1090 0.1211 17 6 8.0195 -0.8899 -0.4602 18 6 6.5898 -0.5855 -0.8113 19 6 3.4674 -1.2741 0.6958 20 6 2.0861 -0.8080 1.2021 21 1 2.1922 -0.1701 2.0795 22 7 1.2268 -1.9575 1.4960 23 6 1.2816 -2.5565 2.7263 24 1 1.9580 -2.1812 3.4800 25 6 0.4678 -3.6460 3.0046 26 7 -0.3563 -4.1037 2.0859 27 14 0.5419 -4.4627 4.6829 28 1 -0.4368 -3.8145 5.5925 29 1 0.2121 -5.9042 4.5471 30 1 1.9095 -4.3185 5.2436 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 3.1636 1.4025 -0.0699 35 1 1.6704 1.9732 -0.8529 36 1 1.7836 1.9299 0.9229 37 1 2.1559 -0.1719 -2.0838 38 1 1.4524 -1.6703 -1.4045 39 1 5.9618 -3.6205 -2.2884 40 1 6.8539 -2.1946 -2.8812 41 1 8.4836 -3.7707 -2.0293 42 1 7.5698 -3.9743 -0.5197 43 1 11.6080 -1.5131 0.4519 44 1 8.3678 1.0823 0.3184 45 1 6.5615 0.0057 -1.7267 46 1 6.1359 -0.0159 -0.0003 47 1 4.2425 -0.5998 1.0598 48 1 3.6650 -2.2895 1.0398 49 1 0.6190 -2.2944 0.8192 50 1 -0.9252 -4.8647 2.2805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995885926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:47 Heat of formation + Delta-G solvation = -3.677189 kcal Electronic energy + Delta-G solvation = -31067.404513 eV Core-core repulsion = 27093.428418 eV Total energy + Delta-G solvation = -3973.976094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.41295 -41.38363 -39.60347 -37.59376 -35.71228 -35.10547 -34.51930 -32.60307 -32.47382 -31.40113 -29.42011 -28.00030 -27.77442 -26.15657 -25.67907 -24.96888 -24.02860 -23.08881 -21.66480 -20.31295 -19.80259 -19.07502 -18.61231 -18.16490 -17.70455 -17.11482 -16.93290 -16.33928 -15.99799 -15.77757 -15.52202 -15.31831 -15.15225 -14.88949 -14.74749 -14.65128 -14.46972 -14.27345 -13.84014 -13.76857 -13.45367 -13.24198 -13.20188 -13.03262 -12.89285 -12.80482 -12.74792 -12.63885 -12.21980 -12.14870 -12.06564 -11.98214 -11.87724 -11.76091 -11.43226 -11.39171 -11.23964 -10.95830 -10.74032 -10.21497 -10.18856 -9.59327 -8.98653 -7.91241 -5.19036 -0.09336 0.04337 1.50085 1.50538 1.56868 1.58158 2.02377 2.58057 2.74217 3.00642 3.23965 3.33321 3.40850 3.46400 3.54551 3.60054 3.72739 3.84901 3.92033 3.94037 4.08165 4.19294 4.27583 4.29926 4.36297 4.41640 4.49992 4.55018 4.59296 4.64878 4.71200 4.76919 4.83368 4.85669 4.91808 4.92443 5.02983 5.04299 5.06433 5.13115 5.13726 5.18794 5.31800 5.37880 5.43921 5.45977 5.55986 5.62890 5.98664 6.30289 6.59641 7.09018 7.13947 7.38047 8.13275 8.35126 9.32028 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.003235 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.628581 B = 8654.555228 C = 9826.421093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.122 4.122 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.532 3.468 7 O -0.583 6.583 8 C -0.099 4.099 9 H 0.099 0.901 10 C -0.093 4.093 11 C -0.067 4.067 12 C 0.168 3.832 13 N -0.540 5.540 14 C 0.281 3.719 15 N -0.538 5.538 16 C 0.153 3.847 17 C -0.178 4.178 18 C -0.049 4.049 19 C 0.082 3.918 20 C 0.169 3.831 21 H 0.079 0.921 22 N -0.724 5.724 23 C -0.233 4.233 24 H 0.082 0.918 25 C -0.072 4.072 26 N -0.969 5.969 27 Si 0.964 3.036 28 H -0.290 1.290 29 H -0.304 1.304 30 H -0.268 1.268 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.219 0.781 44 H 0.197 0.803 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.374 0.626 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.435 11.537 -5.217 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.321 3.679 7 O -0.464 6.464 8 C -0.120 4.120 9 H 0.117 0.883 10 C -0.132 4.132 11 C -0.105 4.105 12 C 0.025 3.975 13 N -0.255 5.255 14 C -0.006 4.006 15 N -0.252 5.252 16 C -0.014 4.014 17 C -0.182 4.182 18 C -0.088 4.088 19 C -0.043 4.043 20 C 0.058 3.942 21 H 0.097 0.903 22 N -0.364 5.364 23 C -0.365 4.365 24 H 0.100 0.900 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.794 3.206 28 H -0.217 1.217 29 H -0.231 1.231 30 H -0.193 1.193 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.235 0.765 44 H 0.214 0.786 45 H 0.110 0.890 46 H 0.124 0.876 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.208 0.792 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.422 11.273 -5.445 21.454 hybrid contribution -1.477 -1.210 0.411 1.953 sum 15.945 10.063 -5.035 19.516 Atomic orbital electron populations 1.21515 0.93410 1.01085 1.01895 1.21960 0.96069 0.96223 0.93476 1.21645 1.01066 0.92377 1.02890 1.22214 0.82982 0.97236 0.97816 1.48505 1.11779 1.65283 1.07831 1.20571 0.85927 0.75773 0.85600 1.90660 1.84762 1.54595 1.16392 1.21288 0.90688 0.98940 1.01099 0.88296 1.21338 0.94909 0.99422 0.97497 1.20396 0.95027 0.94261 1.00790 1.21576 0.90131 0.94442 0.91376 1.68422 1.07538 1.35646 1.13861 1.25429 1.01268 0.83787 0.90153 1.68492 1.13799 1.23359 1.19541 1.23761 0.88661 0.99869 0.89136 1.21134 0.98812 0.95704 1.02581 1.20150 0.88810 0.95828 1.03965 1.23075 1.01258 1.01480 0.78507 1.21495 0.88395 0.88420 0.95845 0.90284 1.42629 1.46194 1.34022 1.13546 1.19619 1.16963 1.08353 0.91515 0.89965 1.25439 0.99771 1.00374 1.00824 1.69808 1.28934 1.28250 1.34957 0.85277 0.77957 0.76945 0.80391 1.21702 1.23121 1.19273 0.92467 0.91213 0.94587 0.91864 0.91381 0.91251 0.90455 0.94316 0.90786 0.90801 0.87964 0.88530 0.76467 0.78592 0.88992 0.87581 0.88974 0.92943 0.79204 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 8.22 71.98 0.59 -2.99 16 2 C -0.08 -2.07 0.83 -50.79 -0.04 -2.11 16 3 C -0.12 -2.43 8.57 71.98 0.62 -1.81 16 4 C 0.12 3.67 5.79 86.85 0.50 4.17 16 5 N -0.60 -17.64 3.31 -811.78 -2.69 -20.33 16 6 C 0.53 15.47 6.93 87.66 0.61 16.07 16 7 O -0.58 -20.86 16.58 -3.03 -0.05 -20.91 16 8 C -0.10 -2.15 2.09 -11.49 -0.02 -2.17 16 9 H 0.10 2.17 7.28 -2.39 -0.02 2.15 16 10 C -0.09 -1.95 4.67 30.61 0.14 -1.81 16 11 C -0.07 -1.24 5.95 29.68 0.18 -1.06 16 12 C 0.17 3.43 6.63 42.21 0.28 3.71 16 13 N -0.54 -11.60 10.32 -188.72 -1.95 -13.55 16 14 C 0.28 5.24 12.29 180.94 2.22 7.46 16 15 N -0.54 -10.38 10.44 -199.93 -2.09 -12.47 16 16 C 0.15 2.49 10.93 84.83 0.93 3.42 16 17 C -0.18 -3.17 5.74 -19.90 -0.11 -3.29 16 18 C -0.05 -0.81 5.03 29.68 0.15 -0.66 16 19 C 0.08 2.36 5.52 86.73 0.48 2.84 16 20 C 0.17 5.50 2.86 46.18 0.13 5.63 16 21 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 22 N -0.72 -32.33 4.61 -317.34 -1.46 -33.79 16 23 C -0.23 -11.68 9.98 84.03 0.84 -10.84 16 24 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 25 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 26 N -0.97 -57.02 13.06 21.65 0.28 -56.74 16 27 Si 0.96 44.07 29.55 68.60 2.03 46.09 16 28 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 29 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 30 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.30 6.38 -2.39 -0.02 1.29 16 34 H 0.06 1.15 7.91 -2.39 -0.02 1.13 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 38 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16 39 H 0.07 1.69 8.12 -2.39 -0.02 1.68 16 40 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.22 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.09 1.51 8.11 -2.38 -0.02 1.50 16 46 H 0.11 1.38 7.56 -2.39 -0.02 1.36 16 47 H 0.09 1.97 7.57 -2.39 -0.02 1.96 16 48 H 0.05 1.80 7.91 -2.38 -0.02 1.78 16 49 H 0.37 18.66 6.10 -92.71 -0.57 18.10 16 50 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -68.11 396.89 2.40 -65.70 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.38 Total: 32.84 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 7.95 Total: 13.15 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -7.91 Total: -136.87 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.11 2.40 -65.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995885926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.028 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds