Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38805 * 120.42733 * 2 1 4 4 C 1.39489 * 118.26344 * 180.23204 * 3 2 1 5 5 C 1.48453 * 120.55134 * 179.75991 * 4 3 2 6 6 O 1.21477 * 119.99741 * 359.72507 * 5 4 3 7 7 N 1.34776 * 119.99926 * 179.73209 * 5 4 3 8 8 C 1.46500 * 119.99720 * 180.02562 * 7 5 4 9 9 C 1.53004 * 115.54953 * 179.97438 * 8 7 5 10 10 C 1.53039 * 109.45791 * 34.41719 * 9 8 7 11 11 C 1.53194 * 109.31279 * 178.60906 * 10 9 8 12 12 N 1.46925 * 108.77112 * 54.64111 * 11 10 9 13 13 C 1.36927 * 120.63534 * 126.41528 * 12 11 10 14 14 H 1.08001 * 120.00618 * 207.94201 * 13 12 11 15 15 C 1.38820 * 120.00081 * 27.94124 * 13 12 11 16 16 N 1.31615 * 119.99968 * 17.51930 * 15 13 12 17 17 Si 1.86799 * 119.99918 * 197.52506 * 15 13 12 18 18 H 1.48501 * 109.47488 * 94.06659 * 17 15 13 19 19 H 1.48502 * 109.46661 * 214.06718 * 17 15 13 20 20 H 1.48495 * 109.47274 * 334.06079 * 17 15 13 21 21 C 1.46931 * 118.73572 * 306.38465 * 12 11 10 22 22 C 1.53039 * 109.46178 * 274.34890 * 9 8 7 23 23 C 1.53001 * 117.50119 * 325.66470 * 8 7 5 24 24 C 1.53002 * 117.50181 * 34.32552 * 8 7 5 25 25 N 1.33106 * 118.90088 * 359.48974 * 4 3 2 26 26 C 1.31552 * 120.73374 * 0.27104 * 25 4 3 27 27 C 1.50706 * 119.03813 * 180.02562 * 26 25 4 28 28 N 1.31906 * 121.92473 * 359.97438 * 26 25 4 29 29 H 1.08995 * 109.47436 * 270.28150 * 1 2 3 30 30 H 1.08997 * 109.47250 * 30.28290 * 1 2 3 31 31 H 1.09001 * 109.46829 * 150.28310 * 1 2 3 32 32 H 1.08001 * 120.86419 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00227 * 359.97438 * 7 5 4 34 34 H 1.09006 * 109.44674 * 154.37866 * 9 8 7 35 35 H 1.08998 * 109.50115 * 298.56564 * 10 9 8 36 36 H 1.09005 * 109.49582 * 58.66190 * 10 9 8 37 37 H 1.08999 * 109.58540 * 174.41777 * 11 10 9 38 38 H 1.08998 * 109.59002 * 294.85034 * 11 10 9 39 39 H 0.96996 * 120.00010 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.58574 * 293.82691 * 21 12 11 41 41 H 1.08997 * 109.58825 * 173.39908 * 21 12 11 42 42 H 1.09002 * 109.49328 * 301.33591 * 22 9 8 43 43 H 1.08997 * 109.49711 * 61.40210 * 22 9 8 44 44 H 1.08998 * 117.49823 * 215.00697 * 23 8 7 45 45 H 1.09003 * 117.49358 * 0.02562 * 23 8 7 46 46 H 1.09002 * 117.49655 * 359.97438 * 24 8 7 47 47 H 1.09002 * 117.50210 * 144.97643 * 24 8 7 48 48 H 1.09005 * 109.47123 * 90.00069 * 27 26 25 49 49 H 1.09005 * 109.47050 * 210.00215 * 27 26 25 50 50 H 1.09000 * 109.47542 * 329.99617 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0050 5 6 4.4062 2.3932 -0.0106 6 8 3.8493 3.4728 -0.0159 7 7 5.7525 2.3294 -0.0099 8 6 6.5442 3.5620 -0.0148 9 6 8.0623 3.3713 -0.0130 10 6 8.4203 2.1230 -0.8228 11 6 9.9427 1.9546 -0.8478 12 7 10.4396 1.9399 0.5348 13 6 11.2255 0.9121 0.9829 14 1 11.2213 0.6456 2.0295 15 6 12.0279 0.2125 0.0918 16 7 12.3068 0.7276 -1.0868 17 14 12.7116 -1.4600 0.5656 18 1 11.8053 -2.5250 0.0660 19 1 14.0580 -1.6330 -0.0367 20 1 12.8154 -1.5517 2.0441 21 6 10.0775 3.0494 1.4274 22 6 8.5536 3.2055 1.4269 23 6 5.9834 4.7589 -0.7855 24 6 5.9828 4.7654 0.7452 25 7 4.2028 -0.0445 0.0009 26 6 3.4954 -1.1537 0.0058 27 6 4.2130 -2.4789 0.0130 28 7 2.1764 -1.1398 0.0057 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5094 32 1 1.6913 2.1441 0.0004 33 1 6.1972 1.4673 -0.0054 34 1 8.5383 4.2436 -0.4610 35 1 7.9649 1.2469 -0.3612 36 1 8.0495 2.2319 -1.8420 37 1 10.1984 1.0152 -1.3379 38 1 10.3935 2.7863 -1.3893 39 1 12.8671 0.2387 -1.7095 40 1 10.5393 3.9704 1.0714 41 1 10.4222 2.8325 2.4384 42 1 8.2777 4.0850 2.0089 43 1 8.0965 2.3196 1.8676 44 1 6.6959 5.4103 -1.2916 45 1 5.0250 4.6292 -1.2885 46 1 5.0241 4.6401 1.2486 47 1 6.6949 5.4210 1.2465 48 1 4.3852 -2.7933 1.0424 49 1 3.6038 -3.2247 -0.4977 50 1 5.1690 -2.3773 -0.5007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000285871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = 58.467431 kcal Electronic energy + Delta-G solvation = -30681.764188 eV Core-core repulsion = 26710.482887 eV Total energy + Delta-G solvation = -3971.281301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.61088 -40.31161 -38.04440 -36.04364 -35.03574 -33.83938 -32.80326 -32.61576 -30.44545 -29.63914 -29.56012 -28.47334 -25.81804 -25.11955 -22.87748 -22.56737 -22.48606 -21.70883 -21.01204 -19.86216 -18.92099 -18.51845 -17.44694 -16.76313 -15.92348 -15.86293 -15.43129 -15.32117 -14.84267 -14.73328 -14.33662 -13.97553 -13.75591 -13.67484 -13.55492 -13.43576 -13.36503 -13.02551 -12.84612 -12.72266 -12.57964 -12.52625 -12.31631 -11.51931 -11.22948 -11.22864 -11.17152 -11.08296 -10.77077 -10.73479 -10.72094 -10.42553 -10.26331 -10.23554 -10.11197 -9.89077 -9.69994 -9.59522 -9.51661 -9.32471 -8.53838 -8.43566 -6.66763 -5.78515 -3.20386 0.24153 0.59601 2.51853 2.80436 3.37759 3.45140 3.46327 3.48605 3.52259 3.60799 4.08110 4.15699 4.50241 4.56201 4.58938 4.80181 4.89745 5.02273 5.09820 5.13795 5.16927 5.21524 5.34903 5.36152 5.42232 5.43602 5.55769 5.62857 5.68975 5.71014 5.73819 5.87211 5.97889 6.06484 6.09671 6.14008 6.31922 6.42140 6.48938 6.53749 6.57966 6.60135 6.69625 6.73967 6.82622 7.00248 7.35340 7.42947 7.64800 7.73350 7.80522 8.02647 8.45631 9.22048 9.85646 10.42557 11.30011 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.003245 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.356183 B = 8627.192734 C =10710.584342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.178 3.822 3 C -0.180 4.180 4 C 0.141 3.859 5 C 0.567 3.433 6 O -0.526 6.526 7 N -0.661 5.661 8 C 0.104 3.896 9 C -0.041 4.041 10 C -0.135 4.135 11 C 0.172 3.828 12 N -0.592 5.592 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.145 3.855 22 C -0.125 4.125 23 C -0.178 4.178 24 C -0.176 4.176 25 N -0.498 5.498 26 C 0.325 3.675 27 C -0.088 4.088 28 N -0.509 5.509 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.419 0.581 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.018 0.982 39 H 0.253 0.747 40 H 0.017 0.983 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.552 0.738 1.115 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 C -0.203 4.203 4 C -0.007 4.007 5 C 0.350 3.650 6 O -0.402 6.402 7 N -0.310 5.310 8 C 0.017 3.983 9 C -0.060 4.060 10 C -0.175 4.175 11 C 0.047 3.953 12 N -0.315 5.315 13 C -0.381 4.381 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.731 3.269 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.018 3.982 22 C -0.164 4.164 23 C -0.216 4.216 24 C -0.214 4.214 25 N -0.215 5.215 26 C 0.058 3.942 27 C -0.146 4.146 28 N -0.225 5.225 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.177 0.823 33 H 0.259 0.741 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.280 0.577 1.000 21.311 hybrid contribution 0.105 -0.455 0.164 0.495 sum -21.175 0.122 1.163 21.207 Atomic orbital electron populations 1.20807 0.87164 1.04368 1.03966 1.21843 0.97870 0.87653 0.89632 1.22742 0.94571 1.01293 1.01729 1.21692 0.92076 0.92478 0.94431 1.17807 0.82502 0.86970 0.77687 1.90741 1.71670 1.27649 1.50148 1.45322 1.04668 1.10349 1.70702 1.21074 0.91566 0.79849 1.05808 1.20788 0.87416 1.00090 0.97732 1.22226 1.01606 0.95783 0.97846 1.20753 0.86688 1.01679 0.86223 1.44057 1.57236 1.21567 1.08595 1.19197 1.17187 1.07412 0.94259 0.91723 1.25030 0.97384 0.99804 0.97432 1.70035 1.39265 1.36772 1.08633 0.86295 0.78041 0.84618 0.77956 1.21465 1.21843 1.20428 1.20910 0.91218 0.91157 0.94880 1.22069 0.99142 1.00542 0.94691 1.23449 1.03230 0.99913 0.94981 1.23363 1.03102 0.99960 0.94943 1.68236 1.41641 0.98137 1.13530 1.23290 0.86352 0.94650 0.89930 1.20648 1.00346 0.89265 1.04365 1.68081 1.09815 1.30475 1.14136 0.89380 0.89782 0.89641 0.82330 0.74109 0.90137 0.92790 0.93034 0.89420 0.96352 0.93677 0.96486 0.92793 0.92907 0.92395 0.88727 0.87745 0.87748 0.88644 0.89215 0.89416 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.22 36.01 0.37 -0.26 16 2 C 0.18 1.78 6.83 -82.23 -0.56 1.22 16 3 C -0.18 -1.99 9.41 -38.91 -0.37 -2.35 16 4 C 0.14 1.87 6.79 -82.64 -0.56 1.31 16 5 C 0.57 8.21 7.53 -12.05 -0.09 8.12 16 6 O -0.53 -8.15 11.90 5.39 0.06 -8.09 16 7 N -0.66 -9.69 5.38 -48.35 -0.26 -9.95 16 8 C 0.10 1.53 2.48 -131.82 -0.33 1.20 16 9 C -0.04 -0.67 2.28 -90.58 -0.21 -0.87 16 10 C -0.14 -2.47 4.83 -26.61 -0.13 -2.60 16 11 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 12 N -0.59 -14.44 2.99 -172.32 -0.52 -14.96 16 13 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 14 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 15 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 16 N -0.90 -25.87 11.22 55.49 0.62 -25.25 16 17 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 22 C -0.13 -2.12 5.22 -26.61 -0.14 -2.26 16 23 C -0.18 -2.47 9.37 -26.69 -0.25 -2.72 16 24 C -0.18 -2.43 8.91 -26.69 -0.24 -2.67 16 25 N -0.50 -6.69 9.60 -7.33 -0.07 -6.76 16 26 C 0.33 3.92 7.64 -157.30 -1.20 2.72 16 27 C -0.09 -0.80 10.31 36.01 0.37 -0.43 16 28 N -0.51 -5.86 10.25 -6.99 -0.07 -5.93 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.16 1.50 7.74 -52.49 -0.41 1.09 16 33 H 0.42 6.29 6.04 -40.82 -0.25 6.05 16 34 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 35 H 0.05 1.00 6.50 -51.93 -0.34 0.66 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 42 H 0.05 0.79 7.24 -51.93 -0.38 0.41 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.10 1.55 6.37 -51.93 -0.33 1.22 16 46 H 0.10 1.55 6.37 -51.93 -0.33 1.22 16 47 H 0.10 1.21 7.60 -51.93 -0.39 0.82 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -30.89 395.76 -10.65 -41.54 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.75 Total: 6.65 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.60 Total: 0.36 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.30 Total: -62.86 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.06 Total: -8.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.89 -10.65 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000285871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.009 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds