Wall clock time and date at job start Wed Apr 1 2020 03:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31888 * 118.95352 * 2 1 4 4 C 1.32125 * 120.96546 * 179.97438 * 3 2 1 5 5 C 1.39965 * 118.92690 * 359.97438 * 4 3 2 6 6 C 1.47833 * 120.94292 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00290 * 174.17220 * 6 5 4 8 8 N 1.34783 * 119.99582 * 354.16884 * 6 5 4 9 9 C 1.46507 * 119.99758 * 180.02562 * 8 6 5 10 10 C 1.52996 * 115.54578 * 180.02562 * 9 8 6 11 11 C 1.53041 * 109.44522 * 274.37819 * 10 9 8 12 12 C 1.53198 * 109.31091 * 181.38495 * 11 10 9 13 13 N 1.46930 * 108.77167 * 305.36430 * 12 11 10 14 14 C 1.36937 * 120.63087 * 233.58640 * 13 12 11 15 15 H 1.08000 * 119.99758 * 27.44329 * 14 13 12 16 16 C 1.38809 * 119.99992 * 207.44978 * 14 13 12 17 17 N 1.31619 * 120.00457 * 15.06898 * 16 14 13 18 18 Si 1.86807 * 119.99870 * 195.07487 * 16 14 13 19 19 H 1.48499 * 109.47136 * 59.99714 * 18 16 14 20 20 H 1.48500 * 109.47047 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46689 * 299.99698 * 18 16 14 22 22 C 1.46930 * 118.73858 * 53.61368 * 13 12 11 23 23 C 1.53040 * 109.46585 * 34.44402 * 10 9 8 24 24 C 1.53003 * 117.49649 * 325.67019 * 9 8 6 25 25 C 1.52995 * 117.49655 * 34.32943 * 9 8 6 26 26 C 1.39935 * 118.12199 * 0.27447 * 5 4 3 27 27 C 1.50697 * 120.53843 * 179.72341 * 26 5 4 28 28 N 1.31858 * 118.95147 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46720 * 90.00041 * 1 2 3 30 30 H 1.09004 * 109.47126 * 210.00350 * 1 2 3 31 31 H 1.08998 * 109.47217 * 329.99993 * 1 2 3 32 32 H 1.08007 * 120.53762 * 179.97438 * 4 3 2 33 33 H 0.97000 * 120.00067 * 0.02562 * 8 6 5 34 34 H 1.09009 * 109.45473 * 154.41803 * 10 9 8 35 35 H 1.09002 * 109.50027 * 301.33383 * 11 10 9 36 36 H 1.08998 * 109.49580 * 61.43540 * 11 10 9 37 37 H 1.09002 * 109.58687 * 185.58060 * 12 11 10 38 38 H 1.09002 * 109.58667 * 65.15129 * 12 11 10 39 39 H 0.96994 * 120.00308 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58534 * 186.60357 * 22 13 12 41 41 H 1.08993 * 109.59046 * 66.17564 * 22 13 12 42 42 H 1.09000 * 109.49056 * 298.58016 * 23 10 9 43 43 H 1.08998 * 109.49478 * 58.64254 * 23 10 9 44 44 H 1.09001 * 117.49521 * 215.00123 * 24 9 8 45 45 H 1.09000 * 117.49775 * 0.02570 * 24 9 8 46 46 H 1.08998 * 117.50436 * 359.97438 * 25 9 8 47 47 H 1.09005 * 117.49481 * 144.97998 * 25 9 8 48 48 H 1.08999 * 109.46723 * 83.64657 * 27 26 5 49 49 H 1.08998 * 109.47156 * 203.63997 * 27 26 5 50 50 H 1.08996 * 109.47129 * 323.64526 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0016 6 6 5.6639 -0.0002 0.0028 7 8 6.2715 -1.0474 0.1106 8 7 6.3379 1.1610 -0.1158 9 6 7.8029 1.1609 -0.1152 10 6 8.4629 2.5341 -0.2549 11 6 8.5838 2.8928 -1.7377 12 6 9.2761 4.2525 -1.8752 13 7 8.5414 5.2404 -1.0733 14 6 8.0996 6.4074 -1.6373 15 1 7.8775 6.4465 -2.6935 16 6 7.9375 7.5402 -0.8516 17 7 8.4764 7.5917 0.3481 18 14 6.9542 8.9915 -1.4969 19 1 5.5650 8.5568 -1.7908 20 1 6.9297 10.0671 -0.4733 21 1 7.5858 9.5041 -2.7393 22 6 8.2902 4.9526 0.3455 23 6 7.6090 3.5852 0.4581 24 6 8.5089 0.1238 0.7606 25 6 8.5095 -0.0320 -0.7622 26 6 3.4661 -1.2003 -0.0038 27 6 4.1857 -2.5244 -0.0092 28 7 2.1453 -1.1538 0.0005 29 1 -0.3632 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.9817 2.1494 0.0001 33 1 5.8529 1.9967 -0.2015 34 1 9.4557 2.5072 0.1944 35 1 9.1726 2.1314 -2.2494 36 1 7.5897 2.9442 -2.1818 37 1 9.2762 4.5584 -2.9214 38 1 10.3018 4.1785 -1.5138 39 1 8.3627 8.3831 0.8972 40 1 7.6397 5.7204 0.7644 41 1 9.2354 4.9357 0.8879 42 1 6.6241 3.6299 -0.0068 43 1 7.5034 3.3162 1.5090 44 1 9.4436 0.4198 1.2368 45 1 7.8833 -0.5587 1.3360 46 1 7.8844 -0.8169 -1.1879 47 1 9.4445 0.1615 -1.2881 48 1 4.4587 -2.7936 1.0111 49 1 3.5322 -3.2914 -0.4248 50 1 5.0866 -2.4458 -0.6177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000292979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:10 Heat of formation + Delta-G solvation = 62.131342 kcal Electronic energy + Delta-G solvation = -30835.326446 eV Core-core repulsion = 26864.204024 eV Total energy + Delta-G solvation = -3971.122422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.68046 -40.30851 -38.10378 -36.13466 -34.76572 -34.11113 -32.85200 -32.68715 -30.51354 -29.67316 -29.46663 -28.65427 -25.62612 -24.34875 -23.27122 -22.72758 -22.50435 -21.76268 -21.18295 -19.93472 -18.97702 -18.25033 -17.88507 -16.83997 -16.23820 -15.93539 -15.40838 -15.21190 -14.82731 -14.74947 -14.18257 -13.89642 -13.69475 -13.62148 -13.50634 -13.46816 -13.30557 -13.07824 -12.77094 -12.70083 -12.67726 -12.45782 -12.27129 -11.82684 -11.56680 -11.26387 -11.15314 -11.06495 -10.84161 -10.75931 -10.74488 -10.44047 -10.30951 -10.17177 -9.92794 -9.76450 -9.68365 -9.59406 -9.57474 -9.37464 -8.57263 -8.47320 -6.71073 -5.81518 -3.24908 0.14087 0.73026 2.57351 2.87125 3.35864 3.42000 3.42709 3.43344 3.52299 3.69877 4.05708 4.06052 4.37711 4.46555 4.56315 4.77722 4.79404 5.02843 5.09910 5.14769 5.18447 5.30082 5.31934 5.37455 5.44262 5.47717 5.56165 5.60208 5.64053 5.69306 5.83890 5.86546 5.93612 6.04448 6.07132 6.16401 6.26404 6.40945 6.45092 6.49003 6.52413 6.61692 6.65474 6.68883 6.77590 6.95309 7.30997 7.36398 7.63571 7.72191 7.75434 8.00649 8.42048 9.18578 9.81636 10.37623 11.26458 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.003194 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.695570 B = 8764.207342 C =10805.628229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.339 3.661 3 N -0.524 5.524 4 C 0.193 3.807 5 C -0.254 4.254 6 C 0.569 3.431 7 O -0.526 6.526 8 N -0.680 5.680 9 C 0.107 3.893 10 C -0.042 4.042 11 C -0.125 4.125 12 C 0.144 3.856 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.905 5.905 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.170 3.830 23 C -0.135 4.135 24 C -0.177 4.177 25 C -0.175 4.175 26 C 0.239 3.761 27 C -0.110 4.110 28 N -0.526 5.526 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.406 0.594 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.018 0.982 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 -17.835 0.524 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 N -0.239 5.239 4 C 0.025 3.975 5 C -0.262 4.262 6 C 0.355 3.645 7 O -0.404 6.404 8 N -0.330 5.330 9 C 0.020 3.980 10 C -0.061 4.061 11 C -0.164 4.164 12 C 0.018 3.982 13 N -0.315 5.315 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.550 5.550 18 Si 0.733 3.267 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.044 3.956 23 C -0.174 4.174 24 C -0.215 4.215 25 C -0.213 4.213 26 C 0.092 3.908 27 C -0.167 4.167 28 N -0.242 5.242 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.244 0.756 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.822 -18.388 0.709 20.858 hybrid contribution 0.174 1.354 -0.281 1.394 sum -9.648 -17.033 0.428 19.580 Atomic orbital electron populations 1.20652 0.85261 1.04520 1.04244 1.23557 0.98524 0.83344 0.87260 1.68325 1.09635 1.30028 1.15910 1.23546 0.89755 0.97800 0.86363 1.21607 0.96077 0.96408 1.12095 1.17710 0.85727 0.84128 0.76928 1.90689 1.68942 1.31021 1.49793 1.45342 1.06321 1.08921 1.72463 1.20988 0.78210 0.93095 1.05661 1.20796 0.98700 0.89079 0.97561 1.22065 1.01190 0.98700 0.94451 1.20919 0.93284 0.88325 0.95713 1.44062 1.62967 1.17797 1.06708 1.19161 1.37709 0.87069 0.94201 0.91736 1.25034 1.00127 0.97169 0.97327 1.69984 1.45355 1.28892 1.10735 0.86367 0.80320 0.82146 0.77917 1.21030 1.21618 1.20919 1.20816 0.97682 0.91819 0.85273 1.22232 0.98727 0.98289 0.98167 1.23448 1.01780 1.02083 0.94210 1.23361 1.01921 1.00192 0.95830 1.21987 0.88762 0.95644 0.84399 1.21081 1.00498 0.90376 1.04723 1.68270 1.09157 1.30117 1.16660 0.89147 0.89346 0.89190 0.81013 0.75633 0.90142 0.92869 0.92484 0.92808 0.96479 0.93558 0.88911 0.96386 0.93239 0.92943 0.88925 0.87639 0.87665 0.88843 0.89145 0.90721 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.31 36.01 0.37 -0.28 16 2 C 0.34 3.83 7.64 -157.06 -1.20 2.63 16 3 N -0.52 -6.40 10.32 -10.39 -0.11 -6.50 16 4 C 0.19 2.22 10.80 -16.78 -0.18 2.04 16 5 C -0.25 -3.04 5.91 -104.69 -0.62 -3.66 16 6 C 0.57 7.22 7.43 -12.33 -0.09 7.13 16 7 O -0.53 -7.22 9.01 5.32 0.05 -7.18 16 8 N -0.68 -8.55 5.34 -48.54 -0.26 -8.81 16 9 C 0.11 1.44 2.48 -131.82 -0.33 1.11 16 10 C -0.04 -0.64 2.28 -90.58 -0.21 -0.85 16 11 C -0.12 -2.00 5.22 -26.61 -0.14 -2.14 16 12 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 13 N -0.59 -14.07 3.00 -172.31 -0.52 -14.58 16 14 C -0.25 -6.66 9.60 -15.06 -0.14 -6.81 16 15 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 16 C 0.00 0.05 4.98 -17.43 -0.09 -0.04 16 17 N -0.90 -25.48 11.02 55.49 0.61 -24.86 16 18 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.17 3.79 5.30 -3.71 -0.02 3.78 16 23 C -0.13 -2.29 4.83 -26.61 -0.13 -2.42 16 24 C -0.18 -2.30 9.37 -26.69 -0.25 -2.55 16 25 C -0.17 -2.25 8.91 -26.69 -0.24 -2.49 16 26 C 0.24 2.84 6.87 -81.82 -0.56 2.28 16 27 C -0.11 -1.10 8.99 36.00 0.32 -0.78 16 28 N -0.53 -6.29 10.26 -6.67 -0.07 -6.36 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.17 1.65 6.58 -52.48 -0.35 1.31 16 33 H 0.41 4.81 4.83 -40.82 -0.20 4.61 16 34 H 0.08 1.25 7.90 -51.92 -0.41 0.84 16 35 H 0.05 0.75 7.25 -51.93 -0.38 0.38 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 40 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.12 8.05 -51.93 -0.42 0.71 16 45 H 0.11 1.47 6.37 -51.93 -0.33 1.14 16 46 H 0.11 1.45 6.37 -51.93 -0.33 1.11 16 47 H 0.09 1.13 7.60 -51.93 -0.39 0.73 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.11 1.17 5.96 -51.93 -0.31 0.86 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -30.12 388.00 -10.52 -40.64 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.52 Total: 5.89 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.52 Total: -0.24 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.34 Total: -61.11 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.05 Total: -7.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.12 -10.52 -40.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000292979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.772 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds