Wall clock time and date at job start Wed Apr 1 2020 03:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34851 * 125.96466 * 2 1 4 4 N 1.36317 * 106.68950 * 179.97438 * 3 2 1 5 5 C 1.35418 * 107.39858 * 0.04205 * 4 3 2 6 6 N 1.30089 * 108.63153 * 359.94366 * 5 4 3 7 7 C 1.51060 * 123.99619 * 179.81527 * 5 4 3 8 8 C 1.53398 * 108.19363 * 344.10697 * 7 5 4 9 9 H 1.08996 * 109.50950 * 288.82952 * 8 7 5 10 10 C 1.50702 * 109.51137 * 168.73077 * 8 7 5 11 11 O 1.21283 * 119.99674 * 240.10019 * 10 8 7 12 12 N 1.34774 * 119.99880 * 60.09536 * 10 8 7 13 13 C 1.46506 * 119.99909 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.46822 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69317 * 94.98354 * 14 13 12 16 16 C 1.50324 * 123.65156 * 180.85213 * 15 14 13 17 17 N 1.46986 * 109.20889 * 349.10498 * 16 15 14 18 18 C 1.36939 * 121.36137 * 222.91605 * 17 16 15 19 19 H 1.08000 * 119.99954 * 155.85066 * 18 17 16 20 20 C 1.38810 * 119.99992 * 335.85195 * 18 17 16 21 21 N 1.31621 * 120.00097 * 344.69850 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 164.69562 * 20 18 17 23 23 H 1.48498 * 109.47078 * 89.99750 * 22 20 18 24 24 H 1.48500 * 109.46952 * 210.00003 * 22 20 18 25 25 H 1.48504 * 109.46914 * 329.99994 * 22 20 18 26 26 C 1.47343 * 117.26484 * 42.80676 * 17 16 15 27 27 C 1.49971 * 117.69664 * 274.99387 * 14 13 12 28 28 C 1.53152 * 109.27091 * 48.77986 * 8 7 5 29 29 C 1.46475 * 127.77296 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47170 * 269.99185 * 1 2 3 31 31 H 1.09001 * 109.47603 * 29.99616 * 1 2 3 32 32 H 1.08999 * 109.47232 * 149.99772 * 1 2 3 33 33 H 1.08002 * 126.65420 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.76038 * 224.40862 * 7 5 4 35 35 H 1.09003 * 109.68340 * 103.75950 * 7 5 4 36 36 H 0.96997 * 119.99905 * 359.97438 * 12 10 8 37 37 H 1.09003 * 109.46940 * 60.00210 * 13 12 10 38 38 H 1.08995 * 109.47154 * 300.00582 * 13 12 10 39 39 H 1.08000 * 118.17702 * 0.87531 * 15 14 13 40 40 H 1.09010 * 109.51943 * 108.95412 * 16 15 14 41 41 H 1.09002 * 109.52609 * 229.07251 * 16 15 14 42 42 H 0.96995 * 120.00192 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.78077 * 178.70453 * 26 17 16 44 44 H 1.09004 * 109.77364 * 57.95601 * 26 17 16 45 45 H 1.09002 * 109.30961 * 40.70755 * 27 14 13 46 46 H 1.08995 * 109.16423 * 281.17733 * 27 14 13 47 47 H 1.08995 * 109.46718 * 50.55610 * 28 8 7 48 48 H 1.09007 * 109.45924 * 170.53821 * 28 8 7 49 49 H 1.08997 * 109.58372 * 43.12045 * 29 4 3 50 50 H 1.09007 * 109.58170 * 282.71164 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 0.0000 6 7 2.2957 -1.0870 0.0003 7 6 4.7654 -1.5972 -0.0037 8 6 5.9738 -0.7419 -0.4055 9 1 5.9050 -0.4889 -1.4634 10 6 7.2431 -1.5144 -0.1541 11 8 8.0750 -1.0803 0.6144 12 7 7.4537 -2.6876 -0.7831 13 6 8.6875 -3.4388 -0.5383 14 6 8.6758 -4.7041 -1.3566 15 6 9.2675 -4.6816 -2.5078 16 6 9.3213 -5.8596 -3.4400 17 7 8.8456 -7.0575 -2.7334 18 6 9.4877 -8.2606 -2.8582 19 1 9.3960 -9.0048 -2.0809 20 6 10.2564 -8.5236 -3.9837 21 7 10.1356 -7.7677 -5.0545 22 14 11.4623 -9.9502 -3.9787 23 1 10.7799 -11.1769 -4.4633 24 1 12.6062 -9.6345 -4.8715 25 1 11.9594 -10.1733 -2.5972 26 6 7.6510 -6.9101 -1.8835 27 6 7.9793 -5.9007 -0.7802 28 6 5.9832 0.5429 0.4281 29 6 4.8148 1.4382 0.0013 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9763 2.1222 -0.0004 34 1 4.6327 -2.4066 -0.7217 35 1 4.9225 -2.0107 0.9926 36 1 6.7882 -3.0349 -1.3973 37 1 8.7550 -3.6915 0.5199 38 1 9.5459 -2.8300 -0.8219 39 1 9.7498 -3.7655 -2.8154 40 1 8.6835 -5.6702 -4.3035 41 1 10.3478 -6.0146 -3.7724 42 1 10.6725 -7.9517 -5.8411 43 1 7.3935 -7.8715 -1.4392 44 1 6.8160 -6.5447 -2.4813 45 1 7.0557 -5.5820 -0.2969 46 1 8.6285 -6.3716 -0.0422 47 1 5.8819 0.2916 1.4839 48 1 6.9230 1.0719 0.2692 49 1 4.7133 2.2658 0.7033 50 1 4.9989 1.8267 -1.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000847562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:42 Heat of formation + Delta-G solvation = 52.608307 kcal Electronic energy + Delta-G solvation = -29567.593397 eV Core-core repulsion = 25596.058025 eV Total energy + Delta-G solvation = -3971.535372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.64570 -40.10526 -37.91959 -36.64767 -35.03829 -33.77517 -32.84044 -31.82393 -30.93565 -29.80062 -29.28236 -27.76913 -26.76093 -24.63053 -24.18877 -23.04129 -22.68282 -21.14027 -20.85667 -20.24724 -19.45051 -17.80112 -17.39219 -17.21575 -16.29564 -15.95896 -15.72557 -15.56508 -15.06985 -14.58969 -14.50361 -14.32836 -14.20617 -14.00548 -13.86267 -13.60476 -13.45050 -13.27951 -12.99588 -12.74290 -12.57442 -12.30783 -12.20044 -12.09447 -11.97280 -11.67810 -11.58304 -11.51568 -11.38075 -10.94346 -10.75064 -10.44879 -10.35349 -10.17039 -10.01041 -9.86013 -9.77572 -9.63522 -9.07966 -8.71688 -8.45131 -8.10885 -6.77859 -5.83099 -3.21864 1.75197 2.42568 2.44671 2.51420 2.83164 3.32800 3.36156 3.43092 3.45450 3.85586 4.07437 4.16341 4.23020 4.46827 4.59595 4.67942 4.70918 4.77304 4.94624 4.98459 5.08301 5.12153 5.27651 5.29772 5.33578 5.36364 5.45414 5.47289 5.54339 5.63087 5.65244 5.76344 5.78933 5.87729 6.03149 6.04560 6.12493 6.30024 6.35657 6.47625 6.53841 6.70217 6.83597 6.88306 7.11545 7.20811 7.27382 7.45416 7.68993 7.78380 7.87863 8.08435 8.34763 9.16247 9.78937 10.36623 11.27493 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001998 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.419974 B =14013.623986 C =14882.989789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.214 3.786 6 N -0.483 5.483 7 C -0.024 4.024 8 C -0.113 4.113 9 H 0.105 0.895 10 C 0.519 3.481 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.157 3.843 14 C -0.168 4.168 15 C -0.123 4.123 16 C 0.193 3.807 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.910 5.910 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.144 3.856 27 C -0.090 4.090 28 C -0.115 4.115 29 C 0.104 3.896 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.042 0.958 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 20.905 9.393 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.139 5.139 5 C -0.049 4.049 6 N -0.202 5.202 7 C -0.063 4.063 8 C -0.135 4.135 9 H 0.123 0.877 10 C 0.304 3.696 11 O -0.420 6.420 12 N -0.367 5.367 13 C 0.034 3.966 14 C -0.168 4.168 15 C -0.144 4.144 16 C 0.068 3.932 17 N -0.318 5.318 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.153 4.153 29 C -0.018 4.018 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.238 0.762 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.120 0.880 49 H 0.112 0.888 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.904 20.465 9.794 26.101 hybrid contribution 0.679 0.169 -0.442 0.828 sum -12.225 20.634 9.351 25.742 Atomic orbital electron populations 1.20004 0.87666 1.02589 1.02074 1.20819 0.96510 0.88280 1.07742 1.22295 0.82830 1.00373 1.13362 1.45380 1.06583 1.07420 1.54566 1.23050 0.94653 0.81523 1.05652 1.69968 0.99610 1.30405 1.20221 1.20134 0.86013 0.95523 1.04645 1.21451 0.93270 0.96029 1.02747 0.87682 1.20231 0.87585 0.81344 0.80456 1.90711 1.46408 1.68634 1.36219 1.46232 1.22576 1.21537 1.46328 1.20488 0.85802 0.90624 0.99641 1.20494 1.04909 0.94683 0.96741 1.23296 0.95188 1.00297 0.95601 1.19759 1.01087 0.81843 0.90465 1.44115 1.27910 1.06140 1.53667 1.19171 1.24315 0.92998 1.01016 0.91363 1.24994 1.01620 0.98572 0.94768 1.70000 1.41845 1.41075 1.02614 0.86255 0.80911 0.81974 0.77405 1.21410 1.21575 1.20526 1.20954 0.89613 0.96398 0.91331 1.20761 0.98240 0.94696 0.99234 1.21722 0.98093 0.94494 1.00978 1.22057 0.81943 0.94398 1.03447 0.91566 0.91482 0.91158 0.80954 0.87855 0.88602 0.76223 0.91461 0.91592 0.88818 0.94080 0.88872 0.93596 0.92412 0.95877 0.92755 0.91737 0.89879 0.88008 0.88758 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.00 0.38 -0.13 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.63 16 3 C -0.06 -0.49 11.55 -16.76 -0.19 -0.68 16 4 N -0.46 -4.05 3.13 -113.75 -0.36 -4.41 16 5 C 0.21 2.32 7.65 -155.24 -1.19 1.13 16 6 N -0.48 -6.25 11.24 -6.88 -0.08 -6.32 16 7 C -0.02 -0.21 5.47 -27.50 -0.15 -0.36 16 8 C -0.11 -0.92 2.55 -91.49 -0.23 -1.16 16 9 H 0.11 0.74 8.12 -51.93 -0.42 0.32 16 10 C 0.52 5.87 7.13 -10.99 -0.08 5.79 16 11 O -0.54 -8.03 15.83 5.55 0.09 -7.94 16 12 N -0.72 -8.15 5.45 -61.47 -0.34 -8.49 16 13 C 0.16 2.16 5.66 -5.19 -0.03 2.13 16 14 C -0.17 -2.71 5.22 -100.99 -0.53 -3.23 16 15 C -0.12 -2.23 9.47 -35.78 -0.34 -2.57 16 16 C 0.19 4.43 5.22 -5.11 -0.03 4.41 16 17 N -0.60 -14.50 3.01 -173.68 -0.52 -15.02 16 18 C -0.25 -6.62 9.71 -15.06 -0.15 -6.76 16 19 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 20 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 21 N -0.91 -25.81 11.07 55.49 0.61 -25.20 16 22 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.14 2.87 6.58 -3.53 -0.02 2.84 16 27 C -0.09 -1.50 5.95 -28.18 -0.17 -1.67 16 28 C -0.11 -0.83 4.67 -26.52 -0.12 -0.95 16 29 C 0.10 0.60 6.98 -3.92 -0.03 0.58 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 35 H 0.10 0.88 8.11 -51.93 -0.42 0.45 16 36 H 0.40 4.03 8.17 -40.82 -0.33 3.70 16 37 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16 39 H 0.09 1.52 7.73 -52.49 -0.41 1.11 16 40 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 41 H 0.09 2.40 6.42 -51.93 -0.33 2.07 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 48 H 0.10 0.72 7.79 -51.93 -0.40 0.32 16 49 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -33.31 400.76 -11.30 -44.61 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.17 Total: 1.68 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.55 Total: -1.40 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.68 Total: -59.44 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.31 -11.30 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000847562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.217 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds