Wall clock time and date at job start Wed Apr 1 2020 03:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34851 * 125.96466 * 2 1 4 4 N 1.36317 * 106.68950 * 179.97438 * 3 2 1 5 5 C 1.35418 * 107.39858 * 0.04205 * 4 3 2 6 6 N 1.30089 * 108.63153 * 359.94366 * 5 4 3 7 7 C 1.51060 * 123.99619 * 179.81527 * 5 4 3 8 8 C 1.53398 * 108.19363 * 344.10697 * 7 5 4 9 9 H 1.08996 * 109.50950 * 288.82952 * 8 7 5 10 10 C 1.50702 * 109.51137 * 168.73077 * 8 7 5 11 11 O 1.21283 * 119.99674 * 240.10019 * 10 8 7 12 12 N 1.34774 * 119.99880 * 60.09536 * 10 8 7 13 13 C 1.46506 * 119.99909 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.46822 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69317 * 94.98354 * 14 13 12 16 16 C 1.50324 * 123.65156 * 180.85213 * 15 14 13 17 17 N 1.46986 * 109.20889 * 349.10498 * 16 15 14 18 18 C 1.36939 * 121.36137 * 222.91605 * 17 16 15 19 19 H 1.08000 * 119.99954 * 155.85066 * 18 17 16 20 20 C 1.38810 * 119.99992 * 335.85195 * 18 17 16 21 21 N 1.31621 * 120.00097 * 344.69850 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 164.69562 * 20 18 17 23 23 H 1.48498 * 109.47078 * 89.99750 * 22 20 18 24 24 H 1.48500 * 109.46952 * 210.00003 * 22 20 18 25 25 H 1.48504 * 109.46914 * 329.99994 * 22 20 18 26 26 C 1.47343 * 117.26484 * 42.80676 * 17 16 15 27 27 C 1.49971 * 117.69664 * 274.99387 * 14 13 12 28 28 C 1.53152 * 109.27091 * 48.77986 * 8 7 5 29 29 C 1.46475 * 127.77296 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47170 * 269.99185 * 1 2 3 31 31 H 1.09001 * 109.47603 * 29.99616 * 1 2 3 32 32 H 1.08999 * 109.47232 * 149.99772 * 1 2 3 33 33 H 1.08002 * 126.65420 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.76038 * 224.40862 * 7 5 4 35 35 H 1.09003 * 109.68340 * 103.75950 * 7 5 4 36 36 H 0.96997 * 119.99905 * 359.97438 * 12 10 8 37 37 H 1.09003 * 109.46940 * 60.00210 * 13 12 10 38 38 H 1.08995 * 109.47154 * 300.00582 * 13 12 10 39 39 H 1.08000 * 118.17702 * 0.87531 * 15 14 13 40 40 H 1.09010 * 109.51943 * 108.95412 * 16 15 14 41 41 H 1.09002 * 109.52609 * 229.07251 * 16 15 14 42 42 H 0.96995 * 120.00192 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.78077 * 178.70453 * 26 17 16 44 44 H 1.09004 * 109.77364 * 57.95601 * 26 17 16 45 45 H 1.09002 * 109.30961 * 40.70755 * 27 14 13 46 46 H 1.08995 * 109.16423 * 281.17733 * 27 14 13 47 47 H 1.08995 * 109.46718 * 50.55610 * 28 8 7 48 48 H 1.09007 * 109.45924 * 170.53821 * 28 8 7 49 49 H 1.08997 * 109.58372 * 43.12045 * 29 4 3 50 50 H 1.09007 * 109.58170 * 282.71164 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 0.0000 6 7 2.2957 -1.0870 0.0003 7 6 4.7654 -1.5972 -0.0037 8 6 5.9738 -0.7419 -0.4055 9 1 5.9050 -0.4889 -1.4634 10 6 7.2431 -1.5144 -0.1541 11 8 8.0750 -1.0803 0.6144 12 7 7.4537 -2.6876 -0.7831 13 6 8.6875 -3.4388 -0.5383 14 6 8.6758 -4.7041 -1.3566 15 6 9.2675 -4.6816 -2.5078 16 6 9.3213 -5.8596 -3.4400 17 7 8.8456 -7.0575 -2.7334 18 6 9.4877 -8.2606 -2.8582 19 1 9.3960 -9.0048 -2.0809 20 6 10.2564 -8.5236 -3.9837 21 7 10.1356 -7.7677 -5.0545 22 14 11.4623 -9.9502 -3.9787 23 1 10.7799 -11.1769 -4.4633 24 1 12.6062 -9.6345 -4.8715 25 1 11.9594 -10.1733 -2.5972 26 6 7.6510 -6.9101 -1.8835 27 6 7.9793 -5.9007 -0.7802 28 6 5.9832 0.5429 0.4281 29 6 4.8148 1.4382 0.0013 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9763 2.1222 -0.0004 34 1 4.6327 -2.4066 -0.7217 35 1 4.9225 -2.0107 0.9926 36 1 6.7882 -3.0349 -1.3973 37 1 8.7550 -3.6915 0.5199 38 1 9.5459 -2.8300 -0.8219 39 1 9.7498 -3.7655 -2.8154 40 1 8.6835 -5.6702 -4.3035 41 1 10.3478 -6.0146 -3.7724 42 1 10.6725 -7.9517 -5.8411 43 1 7.3935 -7.8715 -1.4392 44 1 6.8160 -6.5447 -2.4813 45 1 7.0557 -5.5820 -0.2969 46 1 8.6285 -6.3716 -0.0422 47 1 5.8819 0.2916 1.4839 48 1 6.9230 1.0719 0.2692 49 1 4.7133 2.2658 0.7033 50 1 4.9989 1.8267 -1.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000847562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:41 Heat of formation + Delta-G solvation = 32.849595 kcal Electronic energy + Delta-G solvation = -29568.450199 eV Core-core repulsion = 25596.058025 eV Total energy + Delta-G solvation = -3972.392174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.31903 -41.05327 -39.40222 -37.39978 -36.38989 -34.72667 -34.19433 -32.59258 -32.42950 -31.42740 -30.02709 -28.77636 -27.93848 -25.99946 -25.00222 -24.41148 -23.76723 -22.73533 -21.64695 -21.06205 -20.10357 -19.49400 -18.45240 -17.85173 -17.30887 -17.13049 -17.01766 -16.63941 -16.43648 -15.76369 -15.54235 -15.26879 -15.15576 -15.09911 -14.96306 -14.83622 -14.60305 -14.32159 -13.95526 -13.84154 -13.62052 -13.43080 -13.26959 -13.12079 -12.91118 -12.82857 -12.78495 -12.58861 -12.57707 -12.27153 -12.23762 -12.13550 -12.07777 -11.70726 -11.27681 -11.00845 -10.88146 -10.68455 -10.45948 -10.10358 -9.63961 -9.12048 -8.74521 -7.88766 -5.29730 1.09082 1.18684 1.46525 1.48081 1.54092 1.57387 1.86981 2.08982 2.34237 2.50983 3.17505 3.28548 3.49570 3.52747 3.60188 3.63275 3.87125 3.97821 4.00223 4.08586 4.14880 4.26045 4.35899 4.45400 4.47083 4.52748 4.54229 4.62981 4.69170 4.74624 4.77534 4.84993 4.87019 4.91954 4.93192 5.04496 5.07536 5.11592 5.18266 5.22205 5.35975 5.39315 5.42216 5.49240 5.61467 5.77606 5.89632 6.17840 6.25243 6.33995 6.52048 7.13704 7.17142 7.17857 7.83816 8.37126 9.19794 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001998 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.419974 B =14013.623986 C =14882.989789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.040 4.040 3 C -0.046 4.046 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.526 5.526 7 C -0.019 4.019 8 C -0.100 4.100 9 H 0.123 0.877 10 C 0.523 3.477 11 O -0.575 6.575 12 N -0.711 5.711 13 C 0.167 3.833 14 C -0.139 4.139 15 C -0.142 4.142 16 C 0.204 3.796 17 N -0.616 5.616 18 C -0.256 4.256 19 H 0.069 0.931 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.138 3.862 27 C -0.084 4.084 28 C -0.111 4.111 29 C 0.104 3.896 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.207 0.793 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.014 0.986 41 H 0.056 0.944 42 H 0.250 0.750 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 22.975 10.666 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.179 4.179 4 N -0.138 5.138 5 C -0.068 4.068 6 N -0.247 5.247 7 C -0.058 4.058 8 C -0.122 4.122 9 H 0.141 0.859 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.362 5.362 13 C 0.044 3.956 14 C -0.140 4.140 15 C -0.162 4.162 16 C 0.079 3.921 17 N -0.340 5.340 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.250 4.250 21 N -0.586 5.586 22 Si 0.796 3.204 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.197 1.197 26 C 0.013 3.987 27 C -0.123 4.123 28 C -0.149 4.149 29 C -0.016 4.016 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.224 0.776 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.135 0.865 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.668 22.546 11.084 28.600 hybrid contribution 0.818 -0.461 -0.768 1.213 sum -12.849 22.085 10.316 27.554 Atomic orbital electron populations 1.20043 0.86356 1.03095 1.02491 1.21366 0.97806 0.88565 1.09061 1.22829 0.82426 1.01402 1.11254 1.45591 1.07570 1.07035 1.53582 1.23235 0.94534 0.82684 1.06299 1.69901 1.00951 1.32216 1.21598 1.20098 0.85730 0.95548 1.04440 1.21385 0.90977 0.95839 1.03991 0.85915 1.20665 0.88045 0.80883 0.79374 1.90704 1.47821 1.69348 1.37640 1.46092 1.21944 1.21558 1.46585 1.20233 0.86923 0.89436 0.98986 1.20614 1.02213 0.95497 0.95675 1.22945 0.97996 0.99223 0.96072 1.19405 0.98343 0.83395 0.90952 1.44403 1.29401 1.05863 1.54299 1.19495 1.24338 0.93942 1.00835 0.91295 1.25738 1.03423 1.01203 0.94631 1.70160 1.42694 1.42711 1.03020 0.85273 0.78610 0.79133 0.77432 1.21157 1.21941 1.19711 1.21144 0.88300 0.97640 0.91663 1.20696 0.99881 0.93820 0.97903 1.21686 0.99006 0.94219 1.00035 1.22272 0.79998 0.94076 1.05283 0.91158 0.89190 0.92418 0.77595 0.87481 0.89228 0.75154 0.91236 0.91753 0.86796 0.96877 0.92557 0.94129 0.92413 0.95452 0.89244 0.91924 0.91147 0.87608 0.86469 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.42 71.23 0.74 -0.15 16 2 C -0.04 -0.80 7.10 41.40 0.29 -0.51 16 3 C -0.05 -0.68 11.55 83.22 0.96 0.28 16 4 N -0.46 -6.94 3.13 -513.78 -1.61 -8.55 16 5 C 0.20 3.98 7.65 138.24 1.06 5.04 16 6 N -0.53 -13.36 11.24 -175.67 -1.98 -15.34 16 7 C -0.02 -0.31 5.47 30.10 0.16 -0.14 16 8 C -0.10 -1.41 2.55 -11.36 -0.03 -1.43 16 9 H 0.12 1.35 8.12 -2.39 -0.02 1.33 16 10 C 0.52 10.70 7.13 87.66 0.63 11.33 16 11 O -0.58 -15.99 15.83 -3.04 -0.05 -16.04 16 12 N -0.71 -14.46 5.45 -466.78 -2.55 -17.01 16 13 C 0.17 4.22 5.66 85.63 0.48 4.71 16 14 C -0.14 -4.26 5.22 -15.14 -0.08 -4.34 16 15 C -0.14 -5.08 9.47 27.11 0.26 -4.82 16 16 C 0.20 9.67 5.22 85.42 0.45 10.11 16 17 N -0.62 -30.45 3.01 -703.41 -2.12 -32.57 16 18 C -0.26 -14.01 9.71 84.03 0.82 -13.19 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 20 C -0.06 -3.08 5.01 84.86 0.43 -2.65 16 21 N -0.94 -55.08 11.07 21.65 0.24 -54.85 16 22 Si 0.97 44.90 29.58 68.60 2.03 46.93 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.14 5.41 6.58 86.25 0.57 5.98 16 27 C -0.08 -2.62 5.95 29.65 0.18 -2.45 16 28 C -0.11 -1.33 4.67 30.73 0.14 -1.18 16 29 C 0.10 0.86 6.98 86.47 0.60 1.46 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.11 1.61 7.94 -2.38 -0.02 1.59 16 35 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 36 H 0.41 7.15 8.17 -92.71 -0.76 6.40 16 37 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 38 H 0.06 1.70 7.78 -2.39 -0.02 1.68 16 39 H 0.11 3.59 7.73 -2.91 -0.02 3.57 16 40 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.06 3.04 6.42 -2.39 -0.02 3.03 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 48 H 0.11 1.22 7.79 -2.38 -0.02 1.20 16 49 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -74.56 400.76 1.81 -72.75 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.18 Total: 16.64 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 7.66 Total: 8.03 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -8.01 Total: -128.32 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.05 Total: -16.04 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -74.56 1.81 -72.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000847562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.598 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds