Wall clock time and date at job start Wed Apr 1 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38773 * 119.90609 * 2 1 4 4 N 1.31773 * 120.12454 * 179.74145 * 3 2 1 5 5 C 1.33034 * 119.92660 * 0.54868 * 4 3 2 6 6 C 1.48150 * 120.09712 * 179.72461 * 5 4 3 7 7 O 1.21507 * 120.00038 * 158.11942 * 6 5 4 8 8 N 1.34777 * 119.99487 * 338.39202 * 6 5 4 9 9 C 1.46927 * 120.62599 * 180.21536 * 8 6 5 10 10 C 1.53628 * 108.54306 * 126.37383 * 9 8 6 11 11 C 1.53040 * 109.24209 * 54.85229 * 10 9 8 12 12 C 1.52997 * 109.44455 * 178.49873 * 11 10 9 13 13 H 1.09001 * 109.87064 * 178.59305 * 12 11 10 14 14 C 1.54325 * 109.88314 * 57.42019 * 12 11 10 15 15 C 1.55162 * 102.93860 * 218.38494 * 14 12 11 16 16 C 1.54911 * 101.58369 * 35.50424 * 15 14 12 17 17 N 1.47019 * 109.88607 * 299.60835 * 12 11 10 18 18 C 1.36942 * 125.64768 * 298.39781 * 17 12 11 19 19 H 1.07997 * 120.00067 * 350.68658 * 18 17 12 20 20 C 1.38812 * 119.99913 * 170.68877 * 18 17 12 21 21 N 1.31617 * 120.00315 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99732 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46944 * 59.99791 * 22 20 18 24 24 H 1.48504 * 109.46857 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47151 * 300.00077 * 22 20 18 26 26 C 1.53041 * 109.53767 * 298.51488 * 11 10 9 27 27 C 1.46925 * 120.63596 * 0.49912 * 8 6 5 28 28 C 1.39400 * 119.80738 * 359.44836 * 5 4 3 29 29 N 1.32109 * 119.90591 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47265 * 269.98301 * 1 2 3 31 31 H 1.08993 * 109.46877 * 29.98895 * 1 2 3 32 32 H 1.09008 * 109.46541 * 149.98401 * 1 2 3 33 33 H 1.07999 * 119.93336 * 0.03480 * 3 2 1 34 34 H 1.09005 * 109.58421 * 246.20138 * 9 8 6 35 35 H 1.08996 * 109.58693 * 6.62751 * 9 8 6 36 36 H 1.09000 * 109.62635 * 294.86395 * 10 9 8 37 37 H 1.09002 * 109.45499 * 174.73724 * 10 9 8 38 38 H 1.09000 * 109.45785 * 58.53337 * 11 10 9 39 39 H 1.08996 * 110.71904 * 336.74962 * 14 12 11 40 40 H 1.08998 * 110.71829 * 100.02675 * 14 12 11 41 41 H 1.08996 * 111.00831 * 277.42644 * 15 14 12 42 42 H 1.09005 * 110.99807 * 153.57404 * 15 14 12 43 43 H 1.09002 * 110.36601 * 204.15412 * 16 15 14 44 44 H 1.08991 * 110.46223 * 81.87207 * 16 15 14 45 45 H 0.96999 * 119.99942 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.49425 * 301.41200 * 26 11 10 47 47 H 1.08998 * 109.49266 * 181.31825 * 26 11 10 48 48 H 1.09004 * 109.58616 * 353.36694 * 27 8 6 49 49 H 1.08998 * 109.58816 * 113.78888 * 27 8 6 50 50 H 1.07996 * 120.06205 * 180.25159 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5166 1.2080 0.0051 5 6 4.1847 0.0576 -0.0007 6 6 5.6662 0.0589 -0.0011 7 8 6.2747 -0.9190 0.3861 8 7 6.3389 1.1468 -0.4258 9 6 7.8081 1.1614 -0.4365 10 6 8.2826 1.5470 -1.8459 11 6 7.6381 2.8752 -2.2492 12 6 8.1366 3.2825 -3.6372 13 1 7.6627 4.2155 -3.9421 14 6 7.8165 2.1696 -4.6573 15 6 9.0730 2.1607 -5.5676 16 6 10.1969 2.4773 -4.5496 17 7 9.5974 3.4475 -3.6154 18 6 10.2870 4.3521 -2.8529 19 1 9.7541 5.1202 -2.3122 20 6 11.6712 4.2818 -2.7749 21 7 12.3208 3.3455 -3.4334 22 14 12.6120 5.5163 -1.7354 23 1 12.1673 5.4141 -0.3222 24 1 14.0662 5.2269 -1.8184 25 1 12.3502 6.8887 -2.2386 26 6 6.1162 2.7171 -2.2801 27 6 5.6172 2.3429 -0.8810 28 6 3.4868 -1.1491 -0.0006 29 7 2.1657 -1.1452 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8900 -0.5136 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6563 2.1367 0.0006 34 1 8.1715 1.8914 0.2868 35 1 8.1852 0.1713 -0.1806 36 1 7.9922 0.7716 -2.5549 37 1 9.3674 1.6537 -1.8473 38 1 7.9087 3.6445 -1.5260 39 1 7.6969 1.2094 -4.1556 40 1 6.9251 2.4189 -5.2329 41 1 9.0078 2.9358 -6.3312 42 1 9.2206 1.1801 -6.0201 43 1 11.0546 2.9192 -5.0567 44 1 10.4953 1.5737 -4.0182 45 1 13.2880 3.2966 -3.3792 46 1 5.8464 1.9308 -2.9851 47 1 5.6592 3.6568 -2.5901 48 1 4.5483 2.1325 -0.9185 49 1 5.8056 3.1672 -0.1932 50 1 4.0250 -2.0854 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004334557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:30 Heat of formation + Delta-G solvation = 51.951700 kcal Electronic energy + Delta-G solvation = -31079.719047 eV Core-core repulsion = 27108.155202 eV Total energy + Delta-G solvation = -3971.563845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76150 -39.86679 -38.37615 -36.42069 -35.13645 -33.24521 -32.96146 -32.08825 -30.82758 -29.38432 -28.88869 -27.50507 -25.09754 -24.87793 -24.30407 -23.31485 -22.84576 -21.38150 -20.34702 -19.73833 -18.56213 -18.12782 -17.17737 -16.75719 -16.42984 -15.99929 -15.73199 -15.29325 -14.99470 -14.82568 -14.59904 -14.02705 -13.88433 -13.77144 -13.47845 -13.27873 -13.13564 -12.95546 -12.83745 -12.69166 -12.36813 -12.07761 -11.84244 -11.70820 -11.46799 -11.35481 -11.13232 -10.94530 -10.83246 -10.70265 -10.39976 -10.33885 -10.15791 -10.06415 -9.82802 -9.69203 -9.61147 -9.57282 -9.40046 -9.04575 -8.58600 -8.46966 -6.76202 -5.68244 -3.03605 0.05483 0.62010 2.51497 2.86297 3.34337 3.40795 3.45841 3.46647 3.60068 3.70048 3.98250 4.32033 4.50988 4.55228 4.66629 5.02565 5.06104 5.11622 5.18372 5.21973 5.31317 5.43430 5.46512 5.51353 5.53447 5.67988 5.73339 5.76670 5.83212 5.93236 5.94715 5.98321 6.18046 6.23100 6.27297 6.32462 6.39363 6.52756 6.56677 6.62545 6.66973 6.71854 6.80637 6.99475 7.07717 7.17539 7.23009 7.44413 7.62335 7.64080 7.86607 8.04064 8.34167 9.24800 9.86516 10.54552 11.41488 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002696 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.804965 B =10383.805516 C =10723.394049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.098 3.902 3 C 0.044 3.956 4 N -0.397 5.397 5 C 0.029 3.971 6 C 0.570 3.430 7 O -0.537 6.537 8 N -0.579 5.579 9 C 0.108 3.892 10 C -0.116 4.116 11 C -0.094 4.094 12 C 0.167 3.833 13 H 0.030 0.970 14 C -0.128 4.128 15 C -0.150 4.150 16 C 0.169 3.831 17 N -0.593 5.593 18 C -0.221 4.221 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.130 4.130 27 C 0.079 3.921 28 C 0.115 3.885 29 N -0.441 5.441 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.177 0.823 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.019 0.981 45 H 0.252 0.748 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.129 0.871 49 H 0.067 0.933 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.875 -5.024 4.271 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.118 4.118 4 N -0.114 5.114 5 C -0.111 4.111 6 C 0.355 3.645 7 O -0.414 6.414 8 N -0.310 5.310 9 C -0.013 4.013 10 C -0.154 4.154 11 C -0.115 4.115 12 C 0.060 3.940 13 H 0.048 0.952 14 C -0.166 4.166 15 C -0.189 4.189 16 C 0.045 3.955 17 N -0.317 5.317 18 C -0.349 4.349 19 H 0.091 0.909 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.169 4.169 27 C -0.044 4.044 28 C -0.045 4.045 29 N -0.157 5.157 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.194 0.806 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.037 0.963 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.145 0.855 49 H 0.085 0.915 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.224 -5.500 4.529 23.338 hybrid contribution 0.627 0.833 0.578 1.192 sum -21.597 -4.667 5.108 22.678 Atomic orbital electron populations 1.20764 0.87243 1.04375 1.03834 1.22650 0.98837 0.89693 0.93211 1.23863 0.90585 0.99615 0.97760 1.68471 1.08498 1.27546 1.06918 1.22273 0.96096 0.90964 1.01786 1.17640 0.84807 0.83301 0.78797 1.90793 1.68184 1.33831 1.48631 1.48076 1.07697 1.14082 1.61134 1.21961 0.77375 1.02936 0.99057 1.21955 1.02823 0.96929 0.93673 1.21601 0.92169 0.97327 1.00377 1.20910 0.86705 0.94757 0.91663 0.95199 1.22671 0.97343 0.99190 0.97409 1.23015 0.97660 0.99689 0.98508 1.21524 0.93250 0.92099 0.88667 1.44508 0.99154 1.40227 1.47834 1.18908 0.88913 1.05736 1.21387 0.90894 1.24787 0.96545 0.98572 1.00420 1.69910 1.07074 1.34469 1.45280 0.86272 0.79083 0.80653 0.80189 1.21238 1.21706 1.21309 1.22025 0.97526 1.01248 0.96055 1.22810 0.99654 0.86436 0.95454 1.23785 0.89862 0.99195 0.91629 1.68473 1.08263 1.29030 1.09886 0.89535 0.89769 0.89822 0.80560 0.91186 0.89381 0.92345 0.88661 0.91265 0.91591 0.92930 0.92600 0.92742 0.90234 0.96289 0.93762 0.92211 0.91259 0.85455 0.91516 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.19 36.01 0.37 -0.06 16 2 C 0.10 0.76 6.79 -82.28 -0.56 0.20 16 3 C 0.04 0.34 10.88 -17.38 -0.19 0.15 16 4 N -0.40 -4.25 6.53 -9.61 -0.06 -4.31 16 5 C 0.03 0.35 6.46 -82.84 -0.53 -0.18 16 6 C 0.57 8.56 7.62 -12.19 -0.09 8.47 16 7 O -0.54 -9.38 15.96 5.36 0.09 -9.30 16 8 N -0.58 -8.56 2.97 -173.50 -0.51 -9.08 16 9 C 0.11 1.74 6.46 -3.48 -0.02 1.72 16 10 C -0.12 -2.06 4.93 -26.38 -0.13 -2.19 16 11 C -0.09 -1.62 1.92 -90.58 -0.17 -1.79 16 12 C 0.17 3.27 2.92 -66.95 -0.20 3.07 16 13 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.22 5.26 -24.89 -0.13 -2.35 16 15 C -0.15 -2.85 7.08 -24.58 -0.17 -3.02 16 16 C 0.17 4.02 5.53 -2.53 -0.01 4.00 16 17 N -0.59 -14.26 2.38 -162.58 -0.39 -14.65 16 18 C -0.22 -5.87 9.82 -15.06 -0.15 -6.01 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 21 N -0.92 -26.38 10.37 55.49 0.58 -25.81 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 C -0.13 -1.79 5.13 -26.61 -0.14 -1.93 16 27 C 0.08 1.02 6.01 -3.71 -0.02 1.00 16 28 C 0.11 1.29 10.77 -17.00 -0.18 1.10 16 29 N -0.44 -4.53 10.41 -8.95 -0.09 -4.62 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.16 8.08 -51.93 -0.42 -0.26 16 32 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 33 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 36 H 0.06 1.03 6.02 -51.93 -0.31 0.72 16 37 H 0.09 2.05 7.59 -51.93 -0.39 1.65 16 38 H 0.07 1.32 7.97 -51.93 -0.41 0.90 16 39 H 0.07 1.12 5.48 -51.93 -0.28 0.84 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 2.14 6.54 -51.93 -0.34 1.80 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.06 0.83 7.27 -51.93 -0.38 0.46 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.13 1.51 3.96 -78.96 -0.31 1.20 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.18 1.86 7.80 -52.49 -0.41 1.45 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -31.38 386.11 -9.86 -41.24 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.82 Total: 2.02 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.44 Total: 1.90 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.48 Total: -58.47 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.38 -9.86 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004334557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.194 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds