Wall clock time and date at job start Wed Apr 1 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38768 * 119.90535 * 2 1 4 4 N 1.31770 * 120.12574 * 180.02562 * 3 2 1 5 5 C 1.33039 * 119.92387 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.09545 * 180.02562 * 5 4 3 7 7 O 1.21519 * 119.99687 * 195.41327 * 6 5 4 8 8 N 1.34774 * 119.99697 * 15.41057 * 6 5 4 9 9 C 1.46927 * 120.62559 * 186.97236 * 8 6 5 10 10 C 1.53193 * 108.77723 * 233.58558 * 9 8 6 11 11 C 1.53040 * 109.31280 * 305.36645 * 10 9 8 12 12 C 1.53000 * 109.46183 * 181.38380 * 11 10 9 13 13 H 1.08998 * 109.99983 * 179.80168 * 12 11 10 14 14 C 1.54320 * 109.77255 * 300.94944 * 12 11 10 15 15 C 1.55155 * 102.86356 * 141.88342 * 14 12 11 16 16 C 1.54906 * 101.58115 * 324.30513 * 15 14 12 17 17 N 1.47022 * 109.88149 * 58.69800 * 12 11 10 18 18 C 1.36934 * 125.64794 * 61.68080 * 17 12 11 19 19 H 1.07999 * 119.99411 * 14.16015 * 18 17 12 20 20 C 1.38806 * 120.00065 * 194.43065 * 18 17 12 21 21 N 1.31621 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00194 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47073 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47456 * 120.00463 * 22 20 18 25 25 H 1.48506 * 109.47490 * 240.00556 * 22 20 18 26 26 C 1.53046 * 109.53513 * 61.36528 * 11 10 9 27 27 C 1.46920 * 120.63712 * 6.95226 * 8 6 5 28 28 C 1.39404 * 119.80843 * 0.27050 * 5 4 3 29 29 N 1.32111 * 119.87637 * 359.46367 * 28 5 4 30 30 H 1.09000 * 109.47397 * 89.99813 * 1 2 3 31 31 H 1.09001 * 109.47066 * 209.99851 * 1 2 3 32 32 H 1.09002 * 109.46757 * 329.99796 * 1 2 3 33 33 H 1.08003 * 119.93825 * 359.97438 * 3 2 1 34 34 H 1.09008 * 109.58441 * 113.80092 * 9 8 6 35 35 H 1.09002 * 109.59035 * 353.37925 * 9 8 6 36 36 H 1.08997 * 109.49779 * 185.41429 * 10 9 8 37 37 H 1.08995 * 109.51886 * 65.33359 * 10 9 8 38 38 H 1.08998 * 109.46228 * 301.35755 * 11 10 9 39 39 H 1.09009 * 110.92258 * 23.47094 * 14 12 11 40 40 H 1.08994 * 110.59247 * 260.14766 * 14 12 11 41 41 H 1.09001 * 111.00783 * 206.23230 * 15 14 12 42 42 H 1.08998 * 111.03646 * 82.39278 * 15 14 12 43 43 H 1.09000 * 110.36932 * 278.16981 * 16 15 14 44 44 H 1.09007 * 110.46342 * 155.89313 * 16 15 14 45 45 H 0.97006 * 119.99897 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.50201 * 58.58483 * 26 11 10 47 47 H 1.09005 * 109.49348 * 178.68697 * 26 11 10 48 48 H 1.08999 * 109.58753 * 246.20170 * 27 8 6 49 49 H 1.09007 * 109.58310 * 6.62547 * 27 8 6 50 50 H 1.07993 * 120.06141 * 179.72685 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5166 1.2080 -0.0005 5 6 4.1847 0.0575 -0.0015 6 6 5.6662 0.0588 -0.0015 7 8 6.2746 -0.9550 -0.2822 8 7 6.3390 1.1843 0.3096 9 6 7.8001 1.2465 0.1672 10 6 8.4061 1.7044 1.4976 11 6 7.7590 3.0251 1.9207 12 6 8.3863 3.5032 3.2317 13 1 7.9339 4.4459 3.5395 14 6 8.1808 2.4369 4.3281 15 6 9.5180 2.4867 5.1134 16 6 10.5353 2.7618 3.9781 17 7 9.8359 3.6772 3.0581 18 6 10.4367 4.5493 2.1901 19 1 9.8586 5.3367 1.7294 20 6 11.7873 4.4178 1.8979 21 7 12.4903 3.4546 2.4549 22 14 12.6071 5.6079 0.7143 23 1 11.6061 6.5918 0.2291 24 1 13.7052 6.3230 1.4126 25 1 13.1616 4.8553 -0.4396 26 6 6.2559 2.8177 2.1206 27 6 5.6256 2.3725 0.7972 28 6 3.4867 -1.1492 -0.0078 29 7 2.1656 -1.1453 -0.0019 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6563 2.1368 -0.0004 34 1 8.0608 1.9574 -0.6169 35 1 8.1847 0.2593 -0.0890 36 1 9.4800 1.8472 1.3781 37 1 8.2224 0.9483 2.2609 38 1 7.9222 3.7741 1.1457 39 1 8.0281 1.4511 3.8887 40 1 7.3445 2.7065 4.9731 41 1 9.7223 1.5320 5.5982 42 1 9.5148 3.2988 5.8404 43 1 10.7934 1.8344 3.4669 44 1 11.4320 3.2366 4.3767 45 1 13.4341 3.3624 2.2505 46 1 6.0919 2.0510 2.8777 47 1 5.7995 3.7531 2.4444 48 1 5.7090 3.1751 0.0645 49 1 4.5753 2.1282 0.9567 50 1 4.0249 -2.0854 -0.0131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004334559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:32 Heat of formation + Delta-G solvation = 31.764716 kcal Electronic energy + Delta-G solvation = -31078.207211 eV Core-core repulsion = 27105.767993 eV Total energy + Delta-G solvation = -3972.439218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.55071 -41.04356 -39.81899 -37.81126 -35.92424 -34.67937 -33.90659 -33.64408 -32.06802 -31.20909 -29.74169 -28.86905 -26.57279 -25.81294 -25.65045 -24.43550 -23.94110 -22.66841 -21.88223 -21.21668 -19.86035 -19.11891 -18.53257 -18.15602 -17.34696 -16.96224 -16.83320 -16.76001 -16.41616 -15.90970 -15.72426 -15.69698 -15.30179 -15.03691 -14.50852 -14.41862 -14.05839 -13.90618 -13.81202 -13.71046 -13.51174 -13.49305 -13.17631 -13.10435 -12.82286 -12.79732 -12.65071 -12.44759 -12.28939 -12.08305 -11.95329 -11.79231 -11.74078 -11.52126 -11.49047 -11.20339 -11.09277 -10.93278 -10.62004 -10.33026 -9.97698 -9.68892 -8.70831 -7.80941 -5.15283 -0.72674 -0.07708 1.45195 1.46284 1.52417 1.55474 1.77782 2.52036 2.57158 2.81969 3.01394 3.29671 3.38284 3.52513 3.68794 3.87007 3.91456 3.94668 4.05783 4.14128 4.22510 4.27131 4.27679 4.34652 4.39372 4.46880 4.59382 4.68657 4.79116 4.80269 4.84975 4.87364 4.90007 4.97244 5.05275 5.07600 5.10794 5.20330 5.21982 5.24611 5.29119 5.40269 5.54515 5.57838 5.65530 5.69673 5.72326 5.82859 6.00738 6.27274 6.30913 6.56948 6.90615 7.16941 7.86666 8.54855 9.30720 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.002698 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.983244 B =10377.404488 C =10714.560343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.108 3.892 3 C 0.055 3.945 4 N -0.409 5.409 5 C 0.005 3.995 6 C 0.567 3.433 7 O -0.572 6.572 8 N -0.583 5.583 9 C 0.117 3.883 10 C -0.101 4.101 11 C -0.084 4.084 12 C 0.158 3.842 13 H 0.035 0.965 14 C -0.115 4.115 15 C -0.139 4.139 16 C 0.180 3.820 17 N -0.609 5.609 18 C -0.219 4.219 19 H 0.076 0.924 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.298 1.298 26 C -0.120 4.120 27 C 0.091 3.909 28 C 0.110 3.890 29 N -0.461 5.461 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.222 0.778 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.063 0.937 43 H -0.008 1.008 44 H 0.028 0.972 45 H 0.243 0.757 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.143 0.857 50 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.839 -3.751 -2.031 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.035 4.035 3 C -0.108 4.108 4 N -0.126 5.126 5 C -0.133 4.133 6 C 0.354 3.646 7 O -0.452 6.452 8 N -0.313 5.313 9 C -0.006 4.006 10 C -0.140 4.140 11 C -0.104 4.104 12 C 0.052 3.948 13 H 0.053 0.947 14 C -0.152 4.152 15 C -0.177 4.177 16 C 0.055 3.945 17 N -0.333 5.333 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.224 1.224 25 H -0.225 1.225 26 C -0.158 4.158 27 C -0.030 4.030 28 C -0.048 4.048 29 N -0.176 5.176 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.238 0.762 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.010 0.990 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.111 0.889 48 H 0.088 0.912 49 H 0.159 0.841 50 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -27.236 -4.245 -2.259 27.657 hybrid contribution 1.865 0.399 -0.783 2.062 sum -25.371 -3.846 -3.042 25.840 Atomic orbital electron populations 1.20957 0.84206 1.05805 1.05112 1.23416 1.00688 0.89080 0.90287 1.24599 0.89440 1.01294 0.95497 1.68412 1.10072 1.26841 1.07282 1.21740 0.94328 0.92050 1.05165 1.18079 0.86197 0.82957 0.77318 1.90761 1.69416 1.33225 1.51806 1.48085 1.07418 1.13332 1.62440 1.21592 0.79042 1.01817 0.98111 1.21625 0.99519 0.97311 0.95513 1.21426 0.94747 0.95778 0.98473 1.21180 0.84174 0.95803 0.93617 0.94711 1.22619 0.97295 0.98705 0.96614 1.22886 0.96322 1.01075 0.97435 1.21140 0.93430 0.91413 0.88565 1.44703 1.00878 1.44014 1.43660 1.19253 0.92549 1.05786 1.17300 0.90637 1.25569 0.98018 1.00093 1.01956 1.70155 1.06939 1.34906 1.47751 0.85201 0.78390 0.78436 0.78534 1.18949 1.22363 1.22506 1.21979 0.94082 1.02415 0.97365 1.22807 0.99263 0.85877 0.95086 1.23731 0.90462 0.98892 0.91736 1.68561 1.07621 1.30538 1.10899 0.88031 0.90099 0.86662 0.76188 0.91363 0.90729 0.93183 0.92658 0.93222 0.91440 0.89325 0.90710 0.91804 0.99015 0.95357 0.94753 0.91662 0.88889 0.91155 0.84097 0.80554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.37 10.19 71.24 0.73 0.36 16 2 C 0.11 1.29 6.79 42.64 0.29 1.58 16 3 C 0.06 0.61 10.88 84.83 0.92 1.53 16 4 N -0.41 -7.58 6.51 -184.32 -1.20 -8.79 16 5 C 0.00 0.11 6.47 41.88 0.27 0.38 16 6 C 0.57 17.24 7.64 86.88 0.66 17.90 16 7 O -0.57 -20.90 15.87 -3.78 -0.06 -20.96 16 8 N -0.58 -17.15 2.97 -821.96 -2.44 -19.59 16 9 C 0.12 3.96 6.44 86.36 0.56 4.52 16 10 C -0.10 -3.79 4.93 30.67 0.15 -3.64 16 11 C -0.08 -2.85 1.92 -10.76 -0.02 -2.87 16 12 C 0.16 6.04 2.95 45.34 0.13 6.17 16 13 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 14 C -0.11 -3.72 5.21 31.78 0.17 -3.56 16 15 C -0.14 -5.11 7.08 31.98 0.23 -4.88 16 16 C 0.18 8.87 5.41 86.85 0.47 9.34 16 17 N -0.61 -29.92 2.31 -668.27 -1.54 -31.46 16 18 C -0.22 -11.92 9.83 84.03 0.83 -11.09 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.06 -3.58 5.47 84.86 0.46 -3.12 16 21 N -0.95 -57.30 10.58 21.65 0.23 -57.07 16 22 Si 0.96 46.11 29.55 68.60 2.03 48.14 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 C -0.12 -2.99 5.11 30.67 0.16 -2.84 16 27 C 0.09 2.16 5.85 86.36 0.51 2.67 16 28 C 0.11 2.41 10.77 84.93 0.91 3.32 16 29 N -0.46 -8.60 10.41 -182.21 -1.90 -10.50 16 30 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.11 -0.25 8.09 -2.39 -0.02 -0.26 16 33 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.07 2.71 7.00 -2.39 -0.02 2.69 16 36 H 0.05 2.35 7.55 -2.39 -0.02 2.33 16 37 H 0.05 2.06 6.08 -2.39 -0.01 2.04 16 38 H 0.05 1.88 8.02 -2.39 -0.02 1.86 16 39 H 0.07 2.20 5.50 -2.38 -0.01 2.18 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H -0.01 -0.45 8.06 -2.39 -0.02 -0.47 16 44 H 0.03 1.59 6.93 -2.38 -0.02 1.57 16 45 H 0.24 14.44 8.31 -92.70 -0.77 13.67 16 46 H 0.06 1.61 7.16 -2.39 -0.02 1.59 16 47 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.14 2.89 4.21 -39.83 -0.17 2.72 16 50 H 0.18 3.83 7.73 -2.91 -0.02 3.81 16 Total: -1.00 -73.51 386.27 3.32 -70.19 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.79 Total: 14.26 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 7.42 Total: 15.78 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -6.85 Total: -127.41 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.96 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.51 3.32 -70.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004334559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.958 kcal (2) G-P(sol) polarization free energy of solvation -73.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds