Wall clock time and date at job start Wed Apr 1 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 120.53565 * 2 1 4 4 C 1.31855 * 120.96506 * 179.97438 * 3 2 1 5 5 N 1.31879 * 122.09733 * 0.02562 * 4 3 2 6 6 C 1.32127 * 120.96596 * 359.65980 * 5 4 3 7 7 C 1.39927 * 120.54060 * 179.97438 * 2 1 3 8 8 C 1.47830 * 120.94012 * 0.03269 * 7 2 1 9 9 O 1.21555 * 119.99993 * 53.72124 * 8 7 2 10 10 N 1.34776 * 120.00462 * 233.72899 * 8 7 2 11 11 C 1.46930 * 120.62519 * 354.94221 * 10 8 7 12 12 C 1.53194 * 108.77430 * 126.66721 * 11 10 8 13 13 C 1.53040 * 109.31286 * 54.63500 * 12 11 10 14 14 C 1.53001 * 109.44909 * 178.61790 * 13 12 11 15 15 H 1.08995 * 109.87270 * 178.84966 * 14 13 12 16 16 C 1.54324 * 109.87941 * 57.67390 * 14 13 12 17 17 C 1.55154 * 102.94201 * 218.38803 * 16 14 13 18 18 C 1.54914 * 101.58158 * 35.50264 * 17 16 14 19 19 N 1.47022 * 109.88161 * 299.86765 * 14 13 12 20 20 C 1.36933 * 125.64857 * 298.38619 * 19 14 13 21 21 H 1.08005 * 120.00386 * 345.15411 * 20 19 14 22 22 C 1.38813 * 120.00006 * 165.14440 * 20 19 14 23 23 N 1.31625 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00213 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46747 * 120.00303 * 24 22 20 27 27 H 1.48493 * 109.47509 * 240.00667 * 24 22 20 28 28 C 1.53035 * 109.53849 * 298.63584 * 13 12 11 29 29 C 1.46924 * 120.63626 * 175.22204 * 10 8 7 30 30 H 1.09000 * 109.47791 * 267.93794 * 1 2 3 31 31 H 1.09002 * 109.47248 * 27.94458 * 1 2 3 32 32 H 1.09014 * 109.46774 * 147.93776 * 1 2 3 33 33 H 1.07997 * 118.94678 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.53937 * 180.31015 * 6 5 4 35 35 H 1.08994 * 109.58621 * 246.45338 * 11 10 8 36 36 H 1.08999 * 109.59047 * 6.88259 * 11 10 8 37 37 H 1.08994 * 109.50095 * 294.68214 * 12 11 10 38 38 H 1.09009 * 109.52325 * 174.60347 * 12 11 10 39 39 H 1.09007 * 109.46053 * 58.65267 * 13 12 11 40 40 H 1.08993 * 110.72296 * 336.75257 * 16 14 13 41 41 H 1.09001 * 110.71709 * 100.02386 * 16 14 13 42 42 H 1.09004 * 111.00746 * 277.43034 * 17 16 14 43 43 H 1.08997 * 111.00773 * 153.57982 * 17 16 14 44 44 H 1.08996 * 110.36345 * 204.15120 * 18 17 16 45 45 H 1.09004 * 110.45568 * 81.88014 * 18 17 16 46 46 H 0.96994 * 120.00003 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.49838 * 301.41581 * 28 13 12 48 48 H 1.09001 * 109.49815 * 181.31856 * 28 13 12 49 49 H 1.08999 * 109.58261 * 353.12537 * 29 10 8 50 50 H 1.08999 * 109.58356 * 113.54326 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1483 0.0005 5 7 4.2061 0.0363 0.0005 6 6 3.6164 -1.1460 0.0068 7 6 2.2180 -1.2051 0.0005 8 6 1.5122 -2.5041 0.0004 9 8 0.6751 -2.7408 -0.8486 10 7 1.7966 -3.4258 0.9417 11 6 2.8815 -3.2001 1.9066 12 6 2.3271 -3.3817 3.3231 13 6 1.6628 -4.7559 3.4343 14 6 1.1383 -4.9545 4.8578 15 1 0.6455 -5.9233 4.9393 16 6 0.1475 -3.8263 5.2142 17 6 0.4766 -3.5318 6.7015 18 6 2.0108 -3.7447 6.7286 19 7 2.2508 -4.8772 5.8159 20 6 3.3313 -5.7175 5.8537 21 1 3.3089 -6.6509 5.3108 22 6 4.4556 -5.3697 6.5898 23 7 4.4829 -4.2324 7.2518 24 14 5.9299 -6.5157 6.6409 25 1 5.6493 -7.7202 5.8188 26 1 7.1214 -5.8138 6.0995 27 1 6.1912 -6.9240 8.0445 28 6 0.4984 -4.8431 2.4451 29 6 1.0319 -4.6780 1.0186 30 1 -0.3635 -0.0370 1.0269 31 1 -0.3634 0.9078 -0.4816 32 1 -0.3633 -0.8710 -0.5456 33 1 4.0126 2.0972 0.0001 34 1 4.2039 -2.0523 0.0118 35 1 3.6812 -3.9198 1.7321 36 1 3.2673 -2.1871 1.7923 37 1 1.5913 -2.6043 3.5283 38 1 3.1412 -3.3117 4.0446 39 1 2.3931 -5.5320 3.2048 40 1 0.3277 -2.9458 4.5976 41 1 -0.8817 -4.1691 5.1074 42 1 -0.0276 -4.2385 7.3607 43 1 0.2199 -2.5052 6.9626 44 1 2.3414 -3.9935 7.7370 45 1 2.5255 -2.8531 6.3705 46 1 5.2684 -3.9895 7.7664 47 1 -0.2203 -4.0518 2.6584 48 1 0.0111 -5.8133 2.5412 49 1 0.1975 -4.6401 0.3183 50 1 1.6809 -5.5182 0.7717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004344943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:36 Heat of formation + Delta-G solvation = 39.107477 kcal Electronic energy + Delta-G solvation = -31713.171284 eV Core-core repulsion = 27741.050472 eV Total energy + Delta-G solvation = -3972.120812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.61572 -39.95396 -38.47047 -36.49656 -34.67617 -33.54045 -32.76614 -32.09396 -30.86653 -29.40527 -28.97775 -27.71349 -25.65740 -24.67081 -23.69827 -23.58030 -22.78110 -21.44805 -20.29763 -19.66900 -18.48951 -18.18130 -17.28335 -17.09825 -16.58690 -16.27485 -15.40592 -15.14822 -14.87602 -14.75264 -14.25906 -14.10253 -13.93872 -13.90970 -13.46291 -13.38611 -13.23057 -13.01901 -12.70238 -12.45206 -12.19901 -12.16026 -11.90846 -11.84063 -11.55222 -11.33600 -11.03984 -10.98511 -10.85476 -10.81487 -10.50800 -10.22086 -10.09311 -9.99827 -9.90568 -9.76517 -9.68358 -9.61851 -9.56477 -9.47497 -8.68694 -8.59241 -6.79909 -5.78562 -3.13521 0.32880 0.74481 2.41269 2.84781 3.34497 3.41462 3.43201 3.44626 3.74512 3.84444 4.08087 4.22641 4.44509 4.67664 4.88856 4.99051 5.05841 5.17103 5.18937 5.26654 5.33376 5.36340 5.40761 5.49669 5.51752 5.56742 5.65721 5.73387 5.74803 5.78394 5.87887 5.90050 6.06547 6.09822 6.12002 6.21899 6.32110 6.39907 6.43204 6.54420 6.58316 6.61836 6.71908 6.86355 6.96960 7.08974 7.26551 7.51646 7.59943 7.74669 7.77441 7.93636 8.25418 9.17038 9.78540 10.48202 11.33519 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003512 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.679535 B = 7970.753820 C = 8594.534610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.225 3.775 3 N -0.522 5.522 4 C 0.312 3.688 5 N -0.523 5.523 6 C 0.184 3.816 7 C -0.233 4.233 8 C 0.572 3.428 9 O -0.537 6.537 10 N -0.594 5.594 11 C 0.098 3.902 12 C -0.117 4.117 13 C -0.092 4.092 14 C 0.167 3.833 15 H 0.032 0.968 16 C -0.128 4.128 17 C -0.151 4.151 18 C 0.175 3.825 19 N -0.593 5.593 20 C -0.224 4.224 21 H 0.073 0.927 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.904 3.096 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.129 4.129 29 C 0.114 3.886 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.201 0.799 34 H 0.174 0.826 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.252 0.748 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 6.409 -12.461 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 N -0.237 5.237 4 C 0.025 3.975 5 N -0.237 5.237 6 C 0.018 3.982 7 C -0.241 4.241 8 C 0.358 3.642 9 O -0.415 6.415 10 N -0.326 5.326 11 C -0.025 4.025 12 C -0.155 4.155 13 C -0.113 4.113 14 C 0.059 3.941 15 H 0.049 0.951 16 C -0.166 4.166 17 C -0.189 4.189 18 C 0.050 3.950 19 N -0.317 5.317 20 C -0.353 4.353 21 H 0.091 0.909 22 C -0.200 4.200 23 N -0.563 5.563 24 Si 0.735 3.265 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.168 4.168 29 C -0.008 4.008 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.107 0.893 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.497 7.136 -12.779 16.014 hybrid contribution 0.738 -1.294 0.195 1.502 sum -5.759 5.842 -12.585 15.022 Atomic orbital electron populations 1.21049 0.87178 1.05512 1.04266 1.21803 0.97823 0.86524 0.86024 1.68378 1.10354 1.29516 1.15406 1.25187 0.86701 0.97301 0.88319 1.68473 1.41343 0.98889 1.15007 1.23505 0.90574 0.96854 0.87294 1.21574 0.96667 0.96273 1.09556 1.17793 0.82204 0.82792 0.81433 1.90751 1.34386 1.79058 1.37281 1.48143 1.34847 1.18658 1.30914 1.22151 0.88977 1.01534 0.89801 1.21881 1.01855 0.97511 0.94276 1.21580 0.96215 0.97149 0.96374 1.20921 0.89338 0.95482 0.88329 0.95065 1.22665 0.97807 0.98896 0.97222 1.23015 1.00866 0.99523 0.95536 1.21383 0.87710 0.90035 0.95897 1.44496 1.21852 1.33824 1.31502 1.18968 0.90959 0.98183 1.27201 0.90910 1.24854 0.97566 0.96890 1.00646 1.69944 1.28956 1.22310 1.35112 0.86164 0.83101 0.79857 0.77370 1.20509 1.21756 1.21841 1.22006 0.98948 1.02174 0.93630 1.21698 0.96138 0.84511 0.98423 0.89335 0.89540 0.88109 0.78232 0.80902 0.90556 0.90654 0.92379 0.88364 0.91063 0.91661 0.92764 0.92548 0.92708 0.91482 0.95820 0.93794 0.91730 0.90905 0.89282 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.81 36.00 0.35 -0.92 16 2 C 0.22 2.75 6.86 -81.82 -0.56 2.19 16 3 N -0.52 -6.26 10.36 -10.48 -0.11 -6.37 16 4 C 0.31 3.36 12.27 -92.03 -1.13 2.23 16 5 N -0.52 -6.23 10.42 -14.25 -0.15 -6.38 16 6 C 0.18 2.14 8.72 -16.78 -0.15 2.00 16 7 C -0.23 -2.92 4.95 -104.69 -0.52 -3.43 16 8 C 0.57 7.69 6.70 -12.34 -0.08 7.61 16 9 O -0.54 -8.35 14.64 5.32 0.08 -8.28 16 10 N -0.59 -7.57 2.97 -173.89 -0.52 -8.09 16 11 C 0.10 1.27 5.56 -3.71 -0.02 1.25 16 12 C -0.12 -1.85 4.92 -26.61 -0.13 -1.98 16 13 C -0.09 -1.46 1.92 -90.58 -0.17 -1.64 16 14 C 0.17 3.07 2.93 -66.95 -0.20 2.88 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.13 -2.08 5.26 -24.90 -0.13 -2.21 16 17 C -0.15 -2.72 7.08 -24.58 -0.17 -2.89 16 18 C 0.17 3.96 5.41 -2.53 -0.01 3.95 16 19 N -0.59 -13.61 2.37 -162.57 -0.39 -14.00 16 20 C -0.22 -5.73 9.80 -15.06 -0.15 -5.88 16 21 H 0.07 1.84 7.83 -52.48 -0.41 1.42 16 22 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 23 N -0.92 -25.42 10.58 55.49 0.59 -24.84 16 24 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C -0.13 -1.64 5.13 -26.62 -0.14 -1.78 16 29 C 0.11 1.39 6.42 -3.71 -0.02 1.36 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.15 5.93 -51.92 -0.31 0.84 16 33 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.17 1.69 7.33 -52.48 -0.38 1.30 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.94 4.65 -51.93 -0.24 0.70 16 37 H 0.06 0.92 6.03 -51.93 -0.31 0.61 16 38 H 0.10 1.95 7.59 -51.92 -0.39 1.56 16 39 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 40 H 0.06 1.03 5.48 -51.93 -0.28 0.75 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.74 6.95 -51.93 -0.36 1.38 16 45 H 0.02 0.58 8.05 -51.93 -0.42 0.16 16 46 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 47 H 0.06 0.83 7.26 -51.93 -0.38 0.46 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.09 7.04 -51.93 -0.37 0.72 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -29.81 383.17 -10.71 -40.52 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.63 Total: 3.04 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.33 Total: 2.56 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.57 Total: -59.67 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.81 -10.71 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004344943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.623 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds