Wall clock time and date at job start Wed Apr 1 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 120.53565 * 2 1 4 4 C 1.31855 * 120.96506 * 179.97438 * 3 2 1 5 5 N 1.31879 * 122.09733 * 0.02562 * 4 3 2 6 6 C 1.32127 * 120.96596 * 359.65980 * 5 4 3 7 7 C 1.39927 * 120.54060 * 179.97438 * 2 1 3 8 8 C 1.47830 * 120.94012 * 0.03269 * 7 2 1 9 9 O 1.21555 * 119.99993 * 53.72124 * 8 7 2 10 10 N 1.34776 * 120.00462 * 233.72899 * 8 7 2 11 11 C 1.46930 * 120.62519 * 354.94221 * 10 8 7 12 12 C 1.53194 * 108.77430 * 126.66721 * 11 10 8 13 13 C 1.53040 * 109.31286 * 54.63500 * 12 11 10 14 14 C 1.53001 * 109.44909 * 178.61790 * 13 12 11 15 15 H 1.08995 * 109.87270 * 178.84966 * 14 13 12 16 16 C 1.54324 * 109.87941 * 57.67390 * 14 13 12 17 17 C 1.55154 * 102.94201 * 218.38803 * 16 14 13 18 18 C 1.54914 * 101.58158 * 35.50264 * 17 16 14 19 19 N 1.47022 * 109.88161 * 299.86765 * 14 13 12 20 20 C 1.36933 * 125.64857 * 298.38619 * 19 14 13 21 21 H 1.08005 * 120.00386 * 345.15411 * 20 19 14 22 22 C 1.38813 * 120.00006 * 165.14440 * 20 19 14 23 23 N 1.31625 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00213 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46747 * 120.00303 * 24 22 20 27 27 H 1.48493 * 109.47509 * 240.00667 * 24 22 20 28 28 C 1.53035 * 109.53849 * 298.63584 * 13 12 11 29 29 C 1.46924 * 120.63626 * 175.22204 * 10 8 7 30 30 H 1.09000 * 109.47791 * 267.93794 * 1 2 3 31 31 H 1.09002 * 109.47248 * 27.94458 * 1 2 3 32 32 H 1.09014 * 109.46774 * 147.93776 * 1 2 3 33 33 H 1.07997 * 118.94678 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.53937 * 180.31015 * 6 5 4 35 35 H 1.08994 * 109.58621 * 246.45338 * 11 10 8 36 36 H 1.08999 * 109.59047 * 6.88259 * 11 10 8 37 37 H 1.08994 * 109.50095 * 294.68214 * 12 11 10 38 38 H 1.09009 * 109.52325 * 174.60347 * 12 11 10 39 39 H 1.09007 * 109.46053 * 58.65267 * 13 12 11 40 40 H 1.08993 * 110.72296 * 336.75257 * 16 14 13 41 41 H 1.09001 * 110.71709 * 100.02386 * 16 14 13 42 42 H 1.09004 * 111.00746 * 277.43034 * 17 16 14 43 43 H 1.08997 * 111.00773 * 153.57982 * 17 16 14 44 44 H 1.08996 * 110.36345 * 204.15120 * 18 17 16 45 45 H 1.09004 * 110.45568 * 81.88014 * 18 17 16 46 46 H 0.96994 * 120.00003 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.49838 * 301.41581 * 28 13 12 48 48 H 1.09001 * 109.49815 * 181.31856 * 28 13 12 49 49 H 1.08999 * 109.58261 * 353.12537 * 29 10 8 50 50 H 1.08999 * 109.58356 * 113.54326 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1483 0.0005 5 7 4.2061 0.0363 0.0005 6 6 3.6164 -1.1460 0.0068 7 6 2.2180 -1.2051 0.0005 8 6 1.5122 -2.5041 0.0004 9 8 0.6751 -2.7408 -0.8486 10 7 1.7966 -3.4258 0.9417 11 6 2.8815 -3.2001 1.9066 12 6 2.3271 -3.3817 3.3231 13 6 1.6628 -4.7559 3.4343 14 6 1.1383 -4.9545 4.8578 15 1 0.6455 -5.9233 4.9393 16 6 0.1475 -3.8263 5.2142 17 6 0.4766 -3.5318 6.7015 18 6 2.0108 -3.7447 6.7286 19 7 2.2508 -4.8772 5.8159 20 6 3.3313 -5.7175 5.8537 21 1 3.3089 -6.6509 5.3108 22 6 4.4556 -5.3697 6.5898 23 7 4.4829 -4.2324 7.2518 24 14 5.9299 -6.5157 6.6409 25 1 5.6493 -7.7202 5.8188 26 1 7.1214 -5.8138 6.0995 27 1 6.1912 -6.9240 8.0445 28 6 0.4984 -4.8431 2.4451 29 6 1.0319 -4.6780 1.0186 30 1 -0.3635 -0.0370 1.0269 31 1 -0.3634 0.9078 -0.4816 32 1 -0.3633 -0.8710 -0.5456 33 1 4.0126 2.0972 0.0001 34 1 4.2039 -2.0523 0.0118 35 1 3.6812 -3.9198 1.7321 36 1 3.2673 -2.1871 1.7923 37 1 1.5913 -2.6043 3.5283 38 1 3.1412 -3.3117 4.0446 39 1 2.3931 -5.5320 3.2048 40 1 0.3277 -2.9458 4.5976 41 1 -0.8817 -4.1691 5.1074 42 1 -0.0276 -4.2385 7.3607 43 1 0.2199 -2.5052 6.9626 44 1 2.3414 -3.9935 7.7370 45 1 2.5255 -2.8531 6.3705 46 1 5.2684 -3.9895 7.7664 47 1 -0.2203 -4.0518 2.6584 48 1 0.0111 -5.8133 2.5412 49 1 0.1975 -4.6401 0.3183 50 1 1.6809 -5.5182 0.7717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004344943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:35 Heat of formation + Delta-G solvation = 23.647542 kcal Electronic energy + Delta-G solvation = -31713.841677 eV Core-core repulsion = 27741.050472 eV Total energy + Delta-G solvation = -3972.791205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53841 -41.04866 -39.82286 -37.80006 -35.57161 -34.83535 -34.22034 -33.39105 -31.96376 -31.17940 -29.92200 -29.03952 -26.76455 -26.38332 -24.97706 -24.58417 -23.78529 -22.69113 -21.86441 -20.99393 -19.75631 -19.13744 -18.65535 -18.11568 -17.91537 -17.34861 -16.83069 -16.43826 -16.28167 -15.84959 -15.71465 -15.35789 -15.29690 -14.95373 -14.53367 -14.44806 -14.19412 -14.02795 -13.96752 -13.84219 -13.54776 -13.32869 -13.27278 -13.03827 -12.83389 -12.80393 -12.74219 -12.62636 -12.21321 -11.96243 -11.83353 -11.81312 -11.66382 -11.49686 -11.24582 -11.16479 -11.03472 -10.90704 -10.61990 -10.57102 -10.45680 -9.75096 -8.69899 -7.80055 -5.14437 -0.56065 -0.15078 1.38701 1.46605 1.48778 1.57048 1.82755 2.53226 2.56197 2.92377 3.02518 3.20988 3.25769 3.39320 3.67719 3.75914 3.79787 3.92447 4.11588 4.15081 4.21529 4.24070 4.26102 4.33129 4.35046 4.39676 4.51139 4.56448 4.63676 4.71351 4.77588 4.80083 4.88648 4.92656 4.95751 5.06372 5.08455 5.10400 5.21431 5.24254 5.26558 5.31139 5.52847 5.56524 5.65077 5.70597 5.72134 5.73554 5.84044 6.20814 6.31918 6.87637 6.90068 7.18301 7.87835 8.55864 9.31442 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003512 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.679535 B = 7970.753820 C = 8594.534610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.216 3.784 3 N -0.533 5.533 4 C 0.312 3.688 5 N -0.537 5.537 6 C 0.183 3.817 7 C -0.248 4.248 8 C 0.578 3.422 9 O -0.558 6.558 10 N -0.590 5.590 11 C 0.109 3.891 12 C -0.106 4.106 13 C -0.084 4.084 14 C 0.158 3.842 15 H 0.031 0.969 16 C -0.115 4.115 17 C -0.140 4.140 18 C 0.181 3.819 19 N -0.608 5.608 20 C -0.221 4.221 21 H 0.075 0.925 22 C -0.057 4.057 23 N -0.947 5.947 24 Si 0.961 3.039 25 H -0.267 1.267 26 H -0.295 1.295 27 H -0.299 1.299 28 C -0.117 4.117 29 C 0.115 3.885 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.025 0.975 45 H -0.004 1.004 46 H 0.243 0.757 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 6.416 -14.070 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 N -0.247 5.247 4 C 0.026 3.974 5 N -0.251 5.251 6 C 0.017 3.983 7 C -0.256 4.256 8 C 0.365 3.635 9 O -0.437 6.437 10 N -0.322 5.322 11 C -0.014 4.014 12 C -0.145 4.145 13 C -0.104 4.104 14 C 0.052 3.948 15 H 0.048 0.952 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.251 4.251 23 N -0.596 5.596 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.227 1.227 28 C -0.155 4.155 29 C -0.007 4.007 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.249 0.751 34 H 0.205 0.795 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.884 7.122 -14.413 17.906 hybrid contribution 1.138 -1.281 0.698 1.850 sum -6.746 5.841 -13.715 16.363 Atomic orbital electron populations 1.21046 0.86134 1.05628 1.04751 1.22135 0.98728 0.86609 0.85540 1.68462 1.10898 1.29342 1.16030 1.25889 0.86577 0.98256 0.86727 1.68552 1.41632 0.99253 1.15697 1.23767 0.90503 0.97484 0.86542 1.21547 0.97018 0.95964 1.11045 1.17844 0.81737 0.82928 0.80999 1.90741 1.35407 1.79490 1.38099 1.48115 1.34669 1.18848 1.30524 1.21985 0.89016 1.02193 0.88193 1.21674 1.00302 0.97622 0.94862 1.21410 0.96995 0.96394 0.95618 1.21161 0.88429 0.96397 0.88819 0.95156 1.22631 0.98755 0.98312 0.95596 1.22894 0.96786 1.00966 0.97196 1.21123 0.90910 0.88896 0.93474 1.44695 1.22214 1.33269 1.33057 1.19240 0.91601 0.98419 1.25773 0.90721 1.25503 0.99990 0.98294 1.01291 1.70140 1.29031 1.24031 1.36384 0.85256 0.80165 0.78653 0.76797 1.19091 1.22237 1.22666 1.21899 0.97452 1.03361 0.92797 1.21755 0.96455 0.84474 0.97984 0.88460 0.88309 0.89122 0.75054 0.79541 0.90020 0.89986 0.92283 0.92887 0.92896 0.90931 0.89604 0.92150 0.90637 0.95621 0.98624 0.94729 0.91162 0.89263 0.88767 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 9.81 71.23 0.70 -1.57 16 2 C 0.22 4.99 6.86 42.92 0.29 5.28 16 3 N -0.53 -11.90 10.36 -187.07 -1.94 -13.83 16 4 C 0.31 6.15 12.27 180.84 2.22 8.37 16 5 N -0.54 -12.01 10.42 -198.98 -2.07 -14.08 16 6 C 0.18 4.03 8.72 85.07 0.74 4.77 16 7 C -0.25 -5.87 4.95 -19.91 -0.10 -5.97 16 8 C 0.58 14.60 6.70 86.78 0.58 15.19 16 9 O -0.56 -16.48 14.64 -3.89 -0.06 -16.54 16 10 N -0.59 -13.95 2.97 -822.34 -2.44 -16.40 16 11 C 0.11 2.72 5.56 86.36 0.48 3.20 16 12 C -0.11 -3.32 4.92 30.67 0.15 -3.17 16 13 C -0.08 -2.54 1.92 -10.77 -0.02 -2.56 16 14 C 0.16 5.63 2.93 45.34 0.13 5.77 16 15 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 16 C -0.12 -3.46 5.26 31.78 0.17 -3.29 16 17 C -0.14 -4.87 7.08 31.99 0.23 -4.64 16 18 C 0.18 8.47 5.41 86.86 0.47 8.94 16 19 N -0.61 -28.34 2.37 -668.26 -1.58 -29.92 16 20 C -0.22 -11.47 9.80 84.03 0.82 -10.65 16 21 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.06 -3.11 5.47 84.86 0.46 -2.64 16 23 N -0.95 -54.84 10.58 21.65 0.23 -54.61 16 24 Si 0.96 44.25 29.55 68.60 2.03 46.27 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 28 C -0.12 -2.64 5.13 30.67 0.16 -2.48 16 29 C 0.11 2.50 6.42 86.36 0.55 3.05 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.95 5.93 -2.38 -0.01 1.94 16 33 H 0.23 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.19 3.38 7.33 -2.91 -0.02 3.36 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.97 4.65 -2.39 -0.01 1.96 16 37 H 0.06 1.81 6.03 -2.39 -0.01 1.80 16 38 H 0.05 2.17 7.59 -2.38 -0.02 2.15 16 39 H 0.05 1.81 7.98 -2.38 -0.02 1.79 16 40 H 0.07 2.10 5.48 -2.39 -0.01 2.08 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.03 1.39 6.95 -2.39 -0.02 1.37 16 45 H 0.00 -0.22 8.05 -2.38 -0.02 -0.24 16 46 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 47 H 0.07 1.56 7.26 -2.39 -0.02 1.54 16 48 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.09 2.04 7.04 -2.39 -0.02 2.03 16 50 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -66.37 383.17 3.15 -63.22 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.95 Total: 18.30 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 8.04 Total: 17.58 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -7.81 Total: -128.84 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.06 Total: -16.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.37 3.15 -63.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004344943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.871 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds