Wall clock time and date at job start Wed Apr 1 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38799 * 120.42881 * 2 1 4 4 C 1.39494 * 118.26416 * 180.30231 * 3 2 1 5 5 C 1.48450 * 120.55128 * 179.71465 * 4 3 2 6 6 O 1.21472 * 120.00325 * 19.60634 * 5 4 3 7 7 N 1.34779 * 119.99955 * 199.60249 * 5 4 3 8 8 C 1.46929 * 120.62962 * 186.60586 * 7 5 4 9 9 C 1.53190 * 108.77499 * 126.41652 * 8 7 5 10 10 C 1.53046 * 109.31364 * 54.63565 * 9 8 7 11 11 C 1.53000 * 109.45881 * 178.61662 * 10 9 8 12 12 H 1.08994 * 109.87491 * 181.33831 * 11 10 9 13 13 C 1.54327 * 109.88451 * 60.16050 * 11 10 9 14 14 C 1.55150 * 102.94476 * 218.38800 * 13 11 10 15 15 C 1.54918 * 101.58209 * 35.50664 * 14 13 11 16 16 N 1.47022 * 109.88021 * 302.35548 * 11 10 9 17 17 C 1.36937 * 125.65135 * 298.39288 * 16 11 10 18 18 H 1.08005 * 119.99509 * 349.93905 * 17 16 11 19 19 C 1.38807 * 120.00264 * 169.93902 * 17 16 11 20 20 N 1.31614 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47197 * 59.99995 * 21 19 17 23 23 H 1.48505 * 109.46739 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47051 * 299.99903 * 21 19 17 25 25 C 1.53039 * 109.53475 * 298.63418 * 10 9 8 26 26 C 1.46926 * 120.62970 * 6.63110 * 7 5 4 27 27 N 1.33107 * 118.90056 * 359.43987 * 4 3 2 28 28 C 1.31553 * 120.73524 * 0.27021 * 27 4 3 29 29 N 1.31910 * 121.92037 * 0.03131 * 28 27 4 30 30 H 1.08998 * 109.47222 * 270.26351 * 1 2 3 31 31 H 1.08999 * 109.46787 * 30.26376 * 1 2 3 32 32 H 1.09004 * 109.47061 * 150.26288 * 1 2 3 33 33 H 1.08006 * 120.87222 * 0.03510 * 3 2 1 34 34 H 1.08990 * 109.58691 * 6.62568 * 8 7 5 35 35 H 1.09000 * 109.58314 * 246.19817 * 8 7 5 36 36 H 1.08997 * 109.49530 * 294.67929 * 9 8 7 37 37 H 1.08999 * 109.50009 * 174.58626 * 9 8 7 38 38 H 1.08996 * 109.46310 * 58.65302 * 10 9 8 39 39 H 1.09001 * 110.72210 * 336.75510 * 13 11 10 40 40 H 1.09004 * 110.71560 * 100.02960 * 13 11 10 41 41 H 1.09002 * 111.00600 * 277.43346 * 14 13 11 42 42 H 1.09000 * 111.00611 * 153.57225 * 14 13 11 43 43 H 1.08999 * 110.36646 * 204.15655 * 15 14 13 44 44 H 1.08991 * 110.45812 * 81.86852 * 15 14 13 45 45 H 0.97000 * 120.00562 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.49853 * 181.31974 * 25 10 9 47 47 H 1.09011 * 109.49836 * 301.37941 * 25 10 9 48 48 H 1.09000 * 109.58897 * 113.80417 * 26 7 5 49 49 H 1.08993 * 109.70705 * 353.43865 * 26 7 5 50 50 H 1.07999 * 119.04180 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1441 -0.0065 5 6 4.4062 2.3931 -0.0132 6 8 3.9024 3.4406 0.3398 7 7 5.6937 2.3649 -0.4108 8 6 6.5416 3.5585 -0.2874 9 6 7.8105 3.1842 0.4850 10 6 8.4907 1.9984 -0.2032 11 6 9.7769 1.6437 0.5456 12 1 10.2793 0.8148 0.0472 13 6 9.4467 1.2611 2.0038 14 6 10.6211 1.8867 2.8017 15 6 10.8828 3.1872 2.0016 16 7 10.6670 2.8129 0.5920 17 6 11.2059 3.4493 -0.4941 18 1 11.1219 3.0069 -1.4758 19 6 11.8600 4.6630 -0.3334 20 7 11.9620 5.2024 0.8628 21 14 12.5945 5.5315 -1.8153 22 1 11.5207 5.8298 -2.7967 23 1 13.2327 6.7997 -1.3797 24 1 13.6135 4.6556 -2.4475 25 6 7.5477 0.7930 -0.1964 26 6 6.2758 1.1402 -0.9764 27 7 4.2028 -0.0446 -0.0010 28 6 3.4954 -1.1538 0.0050 29 7 2.1764 -1.1398 0.0053 30 1 -0.3633 0.0047 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8924 -0.5098 33 1 1.6913 2.1442 0.0006 34 1 6.0014 4.3362 0.2523 35 1 6.8111 3.9194 -1.2800 36 1 7.5470 2.9098 1.5064 37 1 8.4914 4.0352 0.5005 38 1 8.7316 2.2651 -1.2323 39 1 8.4962 1.6971 2.3112 40 1 9.4324 0.1778 2.1244 41 1 11.4951 1.2355 2.7855 42 1 10.3221 2.1114 3.8255 43 1 11.9082 3.5250 2.1516 44 1 10.1802 3.9654 2.2992 45 1 12.4188 6.0507 0.9750 46 1 8.0415 -0.0579 -0.6657 47 1 7.2872 0.5407 0.8317 48 1 6.5238 1.3040 -2.0251 49 1 5.5613 0.3213 -0.8934 50 1 4.0096 -2.1035 0.0090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004417168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:44 Heat of formation + Delta-G solvation = 52.186271 kcal Electronic energy + Delta-G solvation = -31146.469175 eV Core-core repulsion = 27174.915502 eV Total energy + Delta-G solvation = -3971.553673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.69180 -39.87559 -38.38773 -36.42107 -35.00388 -33.09278 -32.86049 -32.05500 -30.72217 -29.33183 -29.10954 -27.68953 -25.60544 -24.60877 -24.17620 -23.35490 -22.75064 -21.27871 -20.23039 -19.67661 -18.60677 -17.90582 -17.20747 -16.68794 -16.24311 -15.90421 -15.58868 -15.46841 -15.06208 -14.84511 -14.60478 -14.11752 -13.88174 -13.79784 -13.59913 -13.48892 -13.11401 -12.95005 -12.82115 -12.52874 -12.07455 -12.03676 -11.80687 -11.43221 -11.32042 -11.14065 -10.96167 -10.89726 -10.81003 -10.68374 -10.45862 -10.34404 -10.17404 -10.08589 -9.95945 -9.81650 -9.67881 -9.57320 -9.38049 -9.02986 -8.57894 -8.48134 -6.74829 -5.68082 -3.03116 0.20431 0.50173 2.54007 2.82375 3.39528 3.40945 3.46014 3.46775 3.59553 3.67101 4.03721 4.46410 4.51508 4.56393 4.87411 5.06518 5.09629 5.19540 5.22402 5.29224 5.35041 5.42568 5.48192 5.52127 5.54668 5.70384 5.75785 5.79464 5.83240 5.94337 5.97412 6.00502 6.23972 6.26619 6.32481 6.36861 6.40972 6.47374 6.56357 6.59232 6.65245 6.69014 6.82897 7.02742 7.10598 7.20270 7.39247 7.58664 7.63043 7.65233 7.86998 7.99827 8.34606 9.25415 9.87181 10.55616 11.42025 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002739 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.852206 B =10218.543346 C =10789.119019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.173 4.173 4 C 0.143 3.857 5 C 0.563 3.437 6 O -0.533 6.533 7 N -0.577 5.577 8 C 0.109 3.891 9 C -0.115 4.115 10 C -0.095 4.095 11 C 0.167 3.833 12 H 0.031 0.969 13 C -0.126 4.126 14 C -0.151 4.151 15 C 0.170 3.830 16 N -0.593 5.593 17 C -0.220 4.220 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.120 4.120 26 C 0.069 3.931 27 N -0.487 5.487 28 C 0.294 3.706 29 N -0.511 5.511 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.019 0.981 45 H 0.252 0.748 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.137 0.863 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.590 -12.520 -1.130 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.196 4.196 4 C -0.003 4.003 5 C 0.348 3.652 6 O -0.410 6.410 7 N -0.308 5.308 8 C -0.012 4.012 9 C -0.153 4.153 10 C -0.116 4.116 11 C 0.060 3.940 12 H 0.048 0.952 13 C -0.164 4.164 14 C -0.189 4.189 15 C 0.046 3.954 16 N -0.317 5.317 17 C -0.349 4.349 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.158 4.158 26 C -0.053 4.053 27 N -0.205 5.205 28 C 0.007 3.993 29 N -0.226 5.226 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.038 0.962 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.153 0.847 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.193 -12.558 -0.982 22.957 hybrid contribution 0.213 1.247 -0.844 1.521 sum -18.980 -11.311 -1.826 22.170 Atomic orbital electron populations 1.20826 0.87197 1.04401 1.04062 1.21852 0.97949 0.87739 0.89468 1.22797 0.94542 1.01392 1.00836 1.21770 0.92119 0.92694 0.93752 1.17815 0.82040 0.86478 0.78866 1.90784 1.70621 1.30395 1.49165 1.48064 1.09180 1.14342 1.59172 1.21884 0.91604 0.86391 1.01370 1.21862 0.94774 1.00686 0.97971 1.21613 0.95641 0.93748 1.00549 1.20910 0.89252 0.90799 0.93060 0.95171 1.22643 0.98656 0.98838 0.96288 1.23018 0.97364 1.00424 0.98120 1.21500 1.01397 0.90339 0.82206 1.44506 1.52617 1.32172 1.02438 1.18903 1.28760 1.00251 0.86995 0.90930 1.24789 1.01705 0.97180 0.96643 1.69912 1.47574 1.19255 1.19971 0.86280 0.78916 0.79030 0.82019 1.21257 1.21719 1.21311 1.21872 0.94701 0.98651 1.00608 1.22889 0.98313 0.87865 0.96213 1.68353 1.39834 0.98689 1.13592 1.25172 0.86635 0.97107 0.90432 1.68228 1.10516 1.30404 1.13482 0.89290 0.89772 0.89604 0.82374 0.89544 0.91267 0.92457 0.88459 0.91534 0.91686 0.92822 0.92599 0.92772 0.90440 0.96249 0.93773 0.91410 0.91649 0.92567 0.84702 0.77944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.22 36.01 0.37 -0.18 16 2 C 0.18 1.53 6.83 -82.23 -0.56 0.97 16 3 C -0.17 -1.74 9.41 -38.91 -0.37 -2.11 16 4 C 0.14 1.75 6.48 -82.64 -0.54 1.22 16 5 C 0.56 8.44 7.63 -12.05 -0.09 8.35 16 6 O -0.53 -9.28 16.04 5.39 0.09 -9.20 16 7 N -0.58 -8.54 2.97 -173.66 -0.52 -9.05 16 8 C 0.11 1.77 6.41 -3.71 -0.02 1.74 16 9 C -0.12 -2.06 4.93 -26.61 -0.13 -2.20 16 10 C -0.09 -1.64 1.91 -90.58 -0.17 -1.81 16 11 C 0.17 3.28 2.96 -66.95 -0.20 3.08 16 12 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 13 C -0.13 -2.19 5.21 -24.90 -0.13 -2.32 16 14 C -0.15 -2.86 7.08 -24.58 -0.17 -3.04 16 15 C 0.17 4.05 5.51 -2.52 -0.01 4.03 16 16 N -0.59 -14.27 2.26 -162.57 -0.37 -14.64 16 17 C -0.22 -5.86 9.87 -15.06 -0.15 -6.01 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 20 N -0.92 -26.38 10.40 55.49 0.58 -25.81 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.12 -1.66 5.09 -26.61 -0.14 -1.79 16 26 C 0.07 0.90 6.15 -3.71 -0.02 0.88 16 27 N -0.49 -5.36 6.60 -11.14 -0.07 -5.44 16 28 C 0.29 2.64 12.27 -92.26 -1.13 1.50 16 29 N -0.51 -4.81 10.36 -10.81 -0.11 -4.92 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.16 1.42 7.86 -52.48 -0.41 1.01 16 34 H 0.09 1.46 7.05 -51.93 -0.37 1.09 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.04 6.14 -51.93 -0.32 0.72 16 37 H 0.10 2.12 7.52 -51.93 -0.39 1.73 16 38 H 0.07 1.26 8.05 -51.93 -0.42 0.85 16 39 H 0.06 1.12 5.49 -51.93 -0.29 0.83 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 2.08 6.59 -51.93 -0.34 1.74 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.93 7.09 -51.92 -0.37 0.56 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.14 1.60 3.84 -78.71 -0.30 1.30 16 50 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -31.18 386.30 -10.99 -42.17 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.82 Total: 2.23 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.57 Total: 2.03 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.49 Total: -59.86 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.18 -10.99 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004417168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.357 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds