Wall clock time and date at job start Wed Apr 1 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38799 * 120.42881 * 2 1 4 4 C 1.39494 * 118.26416 * 180.30231 * 3 2 1 5 5 C 1.48450 * 120.55128 * 179.71465 * 4 3 2 6 6 O 1.21472 * 120.00325 * 19.60634 * 5 4 3 7 7 N 1.34779 * 119.99955 * 199.60249 * 5 4 3 8 8 C 1.46929 * 120.62962 * 186.60586 * 7 5 4 9 9 C 1.53190 * 108.77499 * 126.41652 * 8 7 5 10 10 C 1.53046 * 109.31364 * 54.63565 * 9 8 7 11 11 C 1.53000 * 109.45881 * 178.61662 * 10 9 8 12 12 H 1.08994 * 109.87491 * 181.33831 * 11 10 9 13 13 C 1.54327 * 109.88451 * 60.16050 * 11 10 9 14 14 C 1.55150 * 102.94476 * 218.38800 * 13 11 10 15 15 C 1.54918 * 101.58209 * 35.50664 * 14 13 11 16 16 N 1.47022 * 109.88021 * 302.35548 * 11 10 9 17 17 C 1.36937 * 125.65135 * 298.39288 * 16 11 10 18 18 H 1.08005 * 119.99509 * 349.93905 * 17 16 11 19 19 C 1.38807 * 120.00264 * 169.93902 * 17 16 11 20 20 N 1.31614 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47197 * 59.99995 * 21 19 17 23 23 H 1.48505 * 109.46739 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47051 * 299.99903 * 21 19 17 25 25 C 1.53039 * 109.53475 * 298.63418 * 10 9 8 26 26 C 1.46926 * 120.62970 * 6.63110 * 7 5 4 27 27 N 1.33107 * 118.90056 * 359.43987 * 4 3 2 28 28 C 1.31553 * 120.73524 * 0.27021 * 27 4 3 29 29 N 1.31910 * 121.92037 * 0.03131 * 28 27 4 30 30 H 1.08998 * 109.47222 * 270.26351 * 1 2 3 31 31 H 1.08999 * 109.46787 * 30.26376 * 1 2 3 32 32 H 1.09004 * 109.47061 * 150.26288 * 1 2 3 33 33 H 1.08006 * 120.87222 * 0.03510 * 3 2 1 34 34 H 1.08990 * 109.58691 * 6.62568 * 8 7 5 35 35 H 1.09000 * 109.58314 * 246.19817 * 8 7 5 36 36 H 1.08997 * 109.49530 * 294.67929 * 9 8 7 37 37 H 1.08999 * 109.50009 * 174.58626 * 9 8 7 38 38 H 1.08996 * 109.46310 * 58.65302 * 10 9 8 39 39 H 1.09001 * 110.72210 * 336.75510 * 13 11 10 40 40 H 1.09004 * 110.71560 * 100.02960 * 13 11 10 41 41 H 1.09002 * 111.00600 * 277.43346 * 14 13 11 42 42 H 1.09000 * 111.00611 * 153.57225 * 14 13 11 43 43 H 1.08999 * 110.36646 * 204.15655 * 15 14 13 44 44 H 1.08991 * 110.45812 * 81.86852 * 15 14 13 45 45 H 0.97000 * 120.00562 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.49853 * 181.31974 * 25 10 9 47 47 H 1.09011 * 109.49836 * 301.37941 * 25 10 9 48 48 H 1.09000 * 109.58897 * 113.80417 * 26 7 5 49 49 H 1.08993 * 109.70705 * 353.43865 * 26 7 5 50 50 H 1.07999 * 119.04180 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1441 -0.0065 5 6 4.4062 2.3931 -0.0132 6 8 3.9024 3.4406 0.3398 7 7 5.6937 2.3649 -0.4108 8 6 6.5416 3.5585 -0.2874 9 6 7.8105 3.1842 0.4850 10 6 8.4907 1.9984 -0.2032 11 6 9.7769 1.6437 0.5456 12 1 10.2793 0.8148 0.0472 13 6 9.4467 1.2611 2.0038 14 6 10.6211 1.8867 2.8017 15 6 10.8828 3.1872 2.0016 16 7 10.6670 2.8129 0.5920 17 6 11.2059 3.4493 -0.4941 18 1 11.1219 3.0069 -1.4758 19 6 11.8600 4.6630 -0.3334 20 7 11.9620 5.2024 0.8628 21 14 12.5945 5.5315 -1.8153 22 1 11.5207 5.8298 -2.7967 23 1 13.2327 6.7997 -1.3797 24 1 13.6135 4.6556 -2.4475 25 6 7.5477 0.7930 -0.1964 26 6 6.2758 1.1402 -0.9764 27 7 4.2028 -0.0446 -0.0010 28 6 3.4954 -1.1538 0.0050 29 7 2.1764 -1.1398 0.0053 30 1 -0.3633 0.0047 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8924 -0.5098 33 1 1.6913 2.1442 0.0006 34 1 6.0014 4.3362 0.2523 35 1 6.8111 3.9194 -1.2800 36 1 7.5470 2.9098 1.5064 37 1 8.4914 4.0352 0.5005 38 1 8.7316 2.2651 -1.2323 39 1 8.4962 1.6971 2.3112 40 1 9.4324 0.1778 2.1244 41 1 11.4951 1.2355 2.7855 42 1 10.3221 2.1114 3.8255 43 1 11.9082 3.5250 2.1516 44 1 10.1802 3.9654 2.2992 45 1 12.4188 6.0507 0.9750 46 1 8.0415 -0.0579 -0.6657 47 1 7.2872 0.5407 0.8317 48 1 6.5238 1.3040 -2.0251 49 1 5.5613 0.3213 -0.8934 50 1 4.0096 -2.1035 0.0090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004417168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:43 Heat of formation + Delta-G solvation = 35.974640 kcal Electronic energy + Delta-G solvation = -31147.172164 eV Core-core repulsion = 27174.915502 eV Total energy + Delta-G solvation = -3972.256662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.51229 -41.04682 -39.84734 -37.83110 -35.78325 -34.68937 -33.84833 -33.52472 -31.98009 -31.19160 -29.73780 -29.13342 -26.79276 -26.32880 -25.19715 -24.45580 -23.95947 -22.60477 -21.82349 -21.06164 -19.84548 -19.07198 -18.48975 -18.11408 -17.36651 -16.92841 -16.71232 -16.50468 -16.39258 -16.18552 -15.83428 -15.71285 -15.29610 -15.12585 -14.54827 -14.53432 -14.18914 -14.02512 -13.83338 -13.75436 -13.50328 -13.25612 -13.19541 -13.01987 -12.82143 -12.77012 -12.62499 -12.20264 -12.08924 -11.98881 -11.79061 -11.74382 -11.62988 -11.57492 -11.45374 -11.20818 -11.19690 -10.91753 -10.68243 -10.61543 -9.99619 -9.73121 -8.73519 -7.77683 -5.12678 -0.64167 -0.17520 1.45846 1.47617 1.50464 1.53574 1.72378 2.52618 2.61001 2.79862 3.03426 3.24207 3.38807 3.65183 3.70388 3.85269 3.91131 3.95315 4.15828 4.21119 4.22903 4.28019 4.33176 4.37308 4.40065 4.49696 4.59668 4.67478 4.74479 4.79740 4.82152 4.85053 4.90430 4.91615 5.07287 5.08966 5.12774 5.20584 5.23514 5.25991 5.28864 5.43009 5.55053 5.59402 5.67728 5.69945 5.73572 5.74854 5.85119 6.25517 6.32185 6.77361 6.93422 7.17700 7.88019 8.54702 9.31428 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002739 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.852206 B =10218.543346 C =10789.119019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.184 3.816 3 C -0.175 4.175 4 C 0.125 3.875 5 C 0.561 3.439 6 O -0.566 6.566 7 N -0.579 5.579 8 C 0.117 3.883 9 C -0.101 4.101 10 C -0.086 4.086 11 C 0.159 3.841 12 H 0.034 0.966 13 C -0.113 4.113 14 C -0.139 4.139 15 C 0.176 3.824 16 N -0.609 5.609 17 C -0.219 4.219 18 H 0.076 0.924 19 C -0.065 4.065 20 N -0.950 5.950 21 Si 0.966 3.034 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.279 1.279 25 C -0.107 4.107 26 C 0.071 3.929 27 N -0.499 5.499 28 C 0.297 3.703 29 N -0.518 5.518 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.038 0.962 44 H -0.012 1.012 45 H 0.243 0.757 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.156 0.844 50 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 -15.878 -1.713 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.036 3.964 3 C -0.198 4.198 4 C -0.020 4.020 5 C 0.347 3.653 6 O -0.445 6.445 7 N -0.309 5.309 8 C -0.005 4.005 9 C -0.139 4.139 10 C -0.106 4.106 11 C 0.053 3.947 12 H 0.052 0.948 13 C -0.151 4.151 14 C -0.177 4.177 15 C 0.050 3.950 16 N -0.333 5.333 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.796 3.204 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.205 1.205 25 C -0.146 4.146 26 C -0.050 4.050 27 N -0.217 5.217 28 C 0.010 3.990 29 N -0.233 5.233 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.182 0.818 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.052 0.948 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.172 0.828 50 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -21.401 -15.973 -1.585 26.752 hybrid contribution 0.816 2.225 -0.652 2.457 sum -20.585 -13.748 -2.237 24.855 Atomic orbital electron populations 1.20967 0.84612 1.05602 1.05175 1.22387 0.99518 0.86879 0.87643 1.22936 0.93763 1.02431 1.00699 1.21386 0.92554 0.92036 0.96045 1.18257 0.81950 0.87250 0.77806 1.90756 1.71282 1.31991 1.50448 1.48095 1.09251 1.14229 1.59342 1.21608 0.91025 0.87159 1.00758 1.21621 0.94626 0.99324 0.98326 1.21465 0.95450 0.95009 0.98712 1.21167 0.89337 0.89040 0.95194 0.94834 1.22599 0.97751 1.00830 0.93871 1.22891 0.98519 0.97695 0.98643 1.21246 0.98204 0.92206 0.83315 1.44721 1.53625 1.33010 1.01950 1.19210 1.27575 1.00186 0.87912 0.90605 1.25511 1.03140 0.98278 0.98886 1.70138 1.48913 1.19193 1.21704 0.85329 0.78239 0.77585 0.79278 1.20669 1.22577 1.20502 1.21781 0.94146 0.97298 1.01372 1.23057 0.98266 0.87603 0.96064 1.68182 1.40301 0.98658 1.14555 1.25846 0.86728 0.97501 0.88894 1.68356 1.10787 1.30563 1.13618 0.88002 0.88180 0.88819 0.81847 0.90663 0.91434 0.92651 0.93111 0.93464 0.91454 0.89267 0.91917 0.90726 0.94315 0.99378 0.94765 0.89168 0.91202 0.92205 0.82766 0.74640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.22 71.24 0.73 -0.01 16 2 C 0.18 2.66 6.83 42.64 0.29 2.95 16 3 C -0.18 -3.21 9.41 22.71 0.21 -3.00 16 4 C 0.12 2.86 6.48 41.98 0.27 3.13 16 5 C 0.56 16.55 7.63 86.97 0.66 17.22 16 6 O -0.57 -19.96 16.04 -3.63 -0.06 -20.02 16 7 N -0.58 -16.81 2.97 -821.65 -2.44 -19.25 16 8 C 0.12 3.91 6.41 86.36 0.55 4.46 16 9 C -0.10 -3.73 4.93 30.67 0.15 -3.58 16 10 C -0.09 -2.92 1.91 -10.76 -0.02 -2.94 16 11 C 0.16 6.07 2.96 45.34 0.13 6.21 16 12 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 13 C -0.11 -3.66 5.21 31.78 0.17 -3.50 16 14 C -0.14 -5.14 7.08 31.99 0.23 -4.91 16 15 C 0.18 8.66 5.51 86.86 0.48 9.14 16 16 N -0.61 -30.00 2.26 -668.24 -1.51 -31.52 16 17 C -0.22 -11.96 9.87 84.03 0.83 -11.13 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -3.71 5.48 84.86 0.46 -3.24 16 20 N -0.95 -57.33 10.40 21.65 0.23 -57.10 16 21 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 C -0.11 -2.70 5.09 30.67 0.16 -2.54 16 26 C 0.07 1.71 6.15 86.36 0.53 2.24 16 27 N -0.50 -9.63 6.60 -189.17 -1.25 -10.88 16 28 C 0.30 4.31 12.27 180.92 2.22 6.53 16 29 N -0.52 -8.08 10.36 -188.10 -1.95 -10.03 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.40 8.10 -2.39 -0.02 0.38 16 32 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.16 2.73 7.86 -2.91 -0.02 2.71 16 34 H 0.07 2.67 7.05 -2.39 -0.02 2.66 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 2.04 6.14 -2.39 -0.01 2.02 16 37 H 0.05 2.36 7.52 -2.39 -0.02 2.34 16 38 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 39 H 0.07 2.18 5.49 -2.39 -0.01 2.16 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.04 2.19 6.59 -2.39 -0.02 2.17 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.07 1.74 7.09 -2.38 -0.02 1.73 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.16 3.21 3.84 -55.27 -0.21 3.00 16 50 H 0.24 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -71.44 386.30 3.84 -67.60 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.74 Total: 15.97 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 8.06 Total: 17.02 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -6.93 Total: -128.79 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -71.44 3.84 -67.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004417168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.576 kcal (2) G-P(sol) polarization free energy of solvation -71.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds