Wall clock time and date at job start Wed Apr 1 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38811 * 120.43277 * 2 1 4 4 C 1.39492 * 118.26467 * 180.27728 * 3 2 1 5 5 C 1.48456 * 120.54869 * 179.71475 * 4 3 2 6 6 O 1.21471 * 119.99730 * 9.12847 * 5 4 3 7 7 N 1.34777 * 119.99710 * 189.12418 * 5 4 3 8 8 C 1.46928 * 120.62582 * 187.29771 * 7 5 4 9 9 C 1.53195 * 108.77126 * 233.58733 * 8 7 5 10 10 C 1.53039 * 109.31566 * 305.36275 * 9 8 7 11 11 C 1.52997 * 109.46173 * 181.38428 * 10 9 8 12 12 H 1.08994 * 109.99526 * 181.14318 * 11 10 9 13 13 C 1.54311 * 109.77547 * 302.30499 * 11 10 9 14 14 C 1.55159 * 102.86214 * 141.88478 * 13 11 10 15 15 C 1.54907 * 101.58426 * 324.30211 * 14 13 11 16 16 N 1.47027 * 109.87887 * 60.05208 * 11 10 9 17 17 C 1.36938 * 125.64934 * 61.67768 * 16 11 10 18 18 H 1.08007 * 119.99906 * 14.78716 * 17 16 11 19 19 C 1.38807 * 120.00345 * 195.06308 * 17 16 11 20 20 N 1.31623 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00365 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47145 * 59.99752 * 21 19 17 23 23 H 1.48504 * 109.47077 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46815 * 299.99909 * 21 19 17 25 25 C 1.53041 * 109.53286 * 61.36546 * 10 9 8 26 26 C 1.46926 * 120.63545 * 7.27499 * 7 5 4 27 27 N 1.33104 * 118.90117 * 359.44902 * 4 3 2 28 28 C 1.31557 * 120.73876 * 0.27147 * 27 4 3 29 29 N 1.31913 * 121.91573 * 0.02562 * 28 27 4 30 30 H 1.09004 * 109.47026 * 270.27989 * 1 2 3 31 31 H 1.09003 * 109.47367 * 30.27469 * 1 2 3 32 32 H 1.08991 * 109.47636 * 150.28017 * 1 2 3 33 33 H 1.07996 * 120.86596 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.59159 * 113.80258 * 8 7 5 35 35 H 1.09004 * 109.59063 * 353.37091 * 8 7 5 36 36 H 1.09003 * 109.49773 * 185.41213 * 9 8 7 37 37 H 1.08998 * 109.49815 * 65.32106 * 9 8 7 38 38 H 1.08997 * 109.46099 * 301.36476 * 10 9 8 39 39 H 1.08995 * 110.92788 * 23.46543 * 13 11 10 40 40 H 1.08997 * 110.58811 * 260.13920 * 13 11 10 41 41 H 1.08998 * 111.00319 * 206.22182 * 14 13 11 42 42 H 1.09001 * 111.03704 * 82.39309 * 14 13 11 43 43 H 1.08999 * 110.36443 * 278.17683 * 15 14 13 44 44 H 1.08996 * 110.46038 * 155.89692 * 15 14 13 45 45 H 0.96997 * 120.00274 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.49728 * 58.59294 * 25 10 9 47 47 H 1.09002 * 109.49317 * 178.68061 * 25 10 9 48 48 H 1.08998 * 109.58444 * 246.19999 * 26 7 5 49 49 H 1.09002 * 109.58131 * 6.62199 * 26 7 5 50 50 H 1.07994 * 119.04127 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1441 -0.0059 5 6 4.4063 2.3931 -0.0126 6 8 3.8614 3.4659 0.1540 7 7 5.7393 2.3367 -0.2034 8 6 6.5683 3.5406 -0.0548 9 6 7.3969 3.7290 -1.3295 10 6 8.1898 2.4508 -1.6114 11 6 9.0450 2.6473 -2.8647 12 1 9.5985 1.7346 -3.0851 13 6 8.1423 3.0186 -4.0598 14 6 8.9943 4.0663 -4.8239 15 6 9.6918 4.8102 -3.6578 16 7 9.9810 3.7628 -2.6613 17 6 10.9626 3.8174 -1.7082 18 1 11.2598 2.9193 -1.1870 19 6 11.5718 5.0279 -1.4076 20 7 11.2062 6.1233 -2.0392 21 14 12.9114 5.1022 -0.1079 22 1 14.0389 4.2228 -0.5083 23 1 13.3966 6.4996 0.0236 24 1 12.3639 4.6432 1.1939 25 6 7.2216 1.2863 -1.8322 26 6 6.3912 1.0701 -0.5633 27 7 4.2027 -0.0446 -0.0002 28 6 3.4954 -1.1538 0.0056 29 7 2.1763 -1.1398 0.0055 30 1 -0.3633 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5094 33 1 1.6914 2.1441 0.0004 34 1 7.2344 3.4225 0.7998 35 1 5.9274 4.4094 0.0961 36 1 8.0863 4.5626 -1.1955 37 1 6.7323 3.9373 -2.1680 38 1 8.8358 2.2294 -0.7618 39 1 7.2054 3.4585 -3.7181 40 1 7.9543 2.1451 -4.6841 41 1 8.3601 4.7436 -5.3957 42 1 9.7253 3.5801 -5.4700 43 1 9.0256 5.5622 -3.2351 44 1 10.6169 5.2735 -4.0006 45 1 11.6321 6.9692 -1.8295 46 1 6.5587 1.5174 -2.6660 47 1 7.7863 0.3812 -2.0560 48 1 7.0428 0.7505 0.2499 49 1 5.6333 0.3087 -0.7478 50 1 4.0095 -2.1035 0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004417171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:49 Heat of formation + Delta-G solvation = 52.679067 kcal Electronic energy + Delta-G solvation = -31084.002054 eV Core-core repulsion = 27112.469751 eV Total energy + Delta-G solvation = -3971.532304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.68886 -39.87199 -38.38109 -36.41915 -35.01779 -33.08314 -32.85272 -32.06875 -30.71493 -29.33638 -29.10989 -27.71176 -25.58319 -24.60359 -24.18511 -23.34031 -22.75998 -21.27207 -20.24727 -19.69753 -18.60401 -17.98154 -17.04716 -16.67189 -16.13063 -15.90350 -15.79236 -15.48964 -15.05572 -14.80472 -14.60456 -14.05882 -13.90539 -13.79344 -13.59438 -13.48190 -13.05731 -13.02346 -12.82255 -12.54136 -12.11912 -12.06249 -11.81389 -11.44833 -11.27077 -11.14634 -10.96288 -10.91383 -10.80591 -10.67172 -10.42570 -10.35592 -10.16481 -10.09150 -9.97378 -9.84622 -9.68943 -9.60594 -9.40107 -8.96388 -8.55915 -8.46754 -6.71455 -5.71330 -3.05862 0.19214 0.49950 2.58352 2.82108 3.40584 3.44446 3.45822 3.46378 3.58888 3.62473 4.04833 4.46608 4.51205 4.57026 4.88530 5.06679 5.09764 5.20507 5.22455 5.29628 5.35267 5.42881 5.48944 5.52469 5.55771 5.70319 5.75400 5.78615 5.83533 5.94572 5.96612 6.01970 6.23037 6.25968 6.32711 6.36763 6.40568 6.47240 6.55772 6.59624 6.64532 6.68432 6.81766 7.02969 7.10914 7.20158 7.40698 7.58179 7.58374 7.67477 7.83884 8.01623 8.33094 9.24365 9.85933 10.56226 11.40955 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002695 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.086744 B =10385.301464 C =10737.900011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.178 3.822 3 C -0.171 4.171 4 C 0.143 3.857 5 C 0.562 3.438 6 O -0.534 6.534 7 N -0.576 5.576 8 C 0.107 3.893 9 C -0.116 4.116 10 C -0.093 4.093 11 C 0.167 3.833 12 H 0.030 0.970 13 C -0.128 4.128 14 C -0.151 4.151 15 C 0.175 3.825 16 N -0.592 5.592 17 C -0.224 4.224 18 H 0.071 0.929 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.129 4.129 26 C 0.073 3.927 27 N -0.490 5.490 28 C 0.293 3.707 29 N -0.511 5.511 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.160 0.840 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.025 0.975 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.139 0.861 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 -13.334 1.718 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.194 4.194 4 C -0.004 4.004 5 C 0.347 3.653 6 O -0.411 6.411 7 N -0.307 5.307 8 C -0.014 4.014 9 C -0.154 4.154 10 C -0.114 4.114 11 C 0.059 3.941 12 H 0.048 0.952 13 C -0.166 4.166 14 C -0.189 4.189 15 C 0.050 3.950 16 N -0.316 5.316 17 C -0.352 4.352 18 H 0.089 0.911 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.168 4.168 26 C -0.050 4.050 27 N -0.207 5.207 28 C 0.006 3.994 29 N -0.227 5.227 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.155 0.845 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.376 -13.390 1.905 22.816 hybrid contribution 0.599 0.795 0.762 1.254 sum -17.777 -12.594 2.667 21.949 Atomic orbital electron populations 1.20827 0.87182 1.04463 1.04033 1.21864 0.97964 0.87733 0.89416 1.22809 0.94562 1.01429 1.00612 1.21795 0.92170 0.92665 0.93731 1.17808 0.82324 0.86736 0.78477 1.90779 1.70758 1.28616 1.50904 1.48091 1.05488 1.11937 1.65151 1.21890 0.93348 0.86703 0.99447 1.21870 0.98142 1.00071 0.95277 1.21583 0.95792 0.93214 1.00800 1.20926 0.89451 0.92074 0.91617 0.95206 1.22663 0.98545 0.98347 0.97014 1.23012 0.98674 0.98279 0.98960 1.21376 0.98055 0.89772 0.85800 1.44469 1.34728 1.16478 1.35973 1.18871 1.10631 0.93206 1.12531 0.91070 1.24862 1.00387 0.95345 0.99459 1.69923 1.44374 0.98456 1.43636 0.86303 0.81717 0.76580 0.81777 1.21280 1.21715 1.21183 1.22027 0.98159 0.99529 0.97114 1.23002 0.98965 0.85930 0.97055 1.68480 1.39520 0.98790 1.13933 1.25194 0.86678 0.97183 0.90353 1.68223 1.10522 1.30431 1.13477 0.89316 0.89715 0.89591 0.82254 0.91172 0.89486 0.88512 0.92419 0.91279 0.91548 0.92924 0.92728 0.92629 0.95728 0.91593 0.93733 0.92248 0.91233 0.91715 0.84451 0.77975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.22 36.00 0.37 -0.18 16 2 C 0.18 1.54 6.83 -82.23 -0.56 0.98 16 3 C -0.17 -1.74 9.41 -38.90 -0.37 -2.11 16 4 C 0.14 1.75 6.61 -82.64 -0.55 1.20 16 5 C 0.56 8.43 7.67 -12.05 -0.09 8.34 16 6 O -0.53 -9.29 15.89 5.39 0.09 -9.20 16 7 N -0.58 -8.56 2.97 -173.65 -0.52 -9.08 16 8 C 0.11 1.75 6.44 -3.71 -0.02 1.73 16 9 C -0.12 -2.08 4.92 -26.61 -0.13 -2.22 16 10 C -0.09 -1.62 1.92 -90.58 -0.17 -1.80 16 11 C 0.17 3.28 2.93 -66.96 -0.20 3.08 16 12 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 13 C -0.13 -2.22 5.23 -24.90 -0.13 -2.35 16 14 C -0.15 -2.85 7.08 -24.58 -0.17 -3.03 16 15 C 0.17 4.14 5.41 -2.53 -0.01 4.13 16 16 N -0.59 -14.27 2.37 -162.59 -0.38 -14.65 16 17 C -0.22 -5.95 9.80 -15.06 -0.15 -6.10 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 20 N -0.92 -26.29 10.60 55.49 0.59 -25.70 16 21 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.13 -1.81 5.13 -26.61 -0.14 -1.95 16 26 C 0.07 0.95 5.93 -3.71 -0.02 0.93 16 27 N -0.49 -5.32 6.31 -11.14 -0.07 -5.39 16 28 C 0.29 2.60 12.28 -92.26 -1.13 1.47 16 29 N -0.51 -4.80 10.36 -10.81 -0.11 -4.92 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.16 1.47 7.76 -52.49 -0.41 1.06 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 36 H 0.10 2.12 7.59 -51.93 -0.39 1.72 16 37 H 0.06 1.04 6.02 -51.93 -0.31 0.73 16 38 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 39 H 0.07 1.14 5.50 -51.93 -0.29 0.86 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.63 8.04 -51.93 -0.42 0.21 16 44 H 0.07 1.76 6.97 -51.93 -0.36 1.40 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.06 0.84 7.25 -51.93 -0.38 0.46 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.14 1.64 4.01 -81.92 -0.33 1.31 16 50 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -31.15 386.34 -11.04 -42.19 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.86 Total: 2.25 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.58 Total: 1.92 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.49 Total: -59.75 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.15 -11.04 -42.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004417171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.870 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds