Wall clock time and date at job start Wed Apr 1 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38811 * 120.43277 * 2 1 4 4 C 1.39492 * 118.26467 * 180.27728 * 3 2 1 5 5 C 1.48456 * 120.54869 * 179.71475 * 4 3 2 6 6 O 1.21471 * 119.99730 * 9.12847 * 5 4 3 7 7 N 1.34777 * 119.99710 * 189.12418 * 5 4 3 8 8 C 1.46928 * 120.62582 * 187.29771 * 7 5 4 9 9 C 1.53195 * 108.77126 * 233.58733 * 8 7 5 10 10 C 1.53039 * 109.31566 * 305.36275 * 9 8 7 11 11 C 1.52997 * 109.46173 * 181.38428 * 10 9 8 12 12 H 1.08994 * 109.99526 * 181.14318 * 11 10 9 13 13 C 1.54311 * 109.77547 * 302.30499 * 11 10 9 14 14 C 1.55159 * 102.86214 * 141.88478 * 13 11 10 15 15 C 1.54907 * 101.58426 * 324.30211 * 14 13 11 16 16 N 1.47027 * 109.87887 * 60.05208 * 11 10 9 17 17 C 1.36938 * 125.64934 * 61.67768 * 16 11 10 18 18 H 1.08007 * 119.99906 * 14.78716 * 17 16 11 19 19 C 1.38807 * 120.00345 * 195.06308 * 17 16 11 20 20 N 1.31623 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00365 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47145 * 59.99752 * 21 19 17 23 23 H 1.48504 * 109.47077 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46815 * 299.99909 * 21 19 17 25 25 C 1.53041 * 109.53286 * 61.36546 * 10 9 8 26 26 C 1.46926 * 120.63545 * 7.27499 * 7 5 4 27 27 N 1.33104 * 118.90117 * 359.44902 * 4 3 2 28 28 C 1.31557 * 120.73876 * 0.27147 * 27 4 3 29 29 N 1.31913 * 121.91573 * 0.02562 * 28 27 4 30 30 H 1.09004 * 109.47026 * 270.27989 * 1 2 3 31 31 H 1.09003 * 109.47367 * 30.27469 * 1 2 3 32 32 H 1.08991 * 109.47636 * 150.28017 * 1 2 3 33 33 H 1.07996 * 120.86596 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.59159 * 113.80258 * 8 7 5 35 35 H 1.09004 * 109.59063 * 353.37091 * 8 7 5 36 36 H 1.09003 * 109.49773 * 185.41213 * 9 8 7 37 37 H 1.08998 * 109.49815 * 65.32106 * 9 8 7 38 38 H 1.08997 * 109.46099 * 301.36476 * 10 9 8 39 39 H 1.08995 * 110.92788 * 23.46543 * 13 11 10 40 40 H 1.08997 * 110.58811 * 260.13920 * 13 11 10 41 41 H 1.08998 * 111.00319 * 206.22182 * 14 13 11 42 42 H 1.09001 * 111.03704 * 82.39309 * 14 13 11 43 43 H 1.08999 * 110.36443 * 278.17683 * 15 14 13 44 44 H 1.08996 * 110.46038 * 155.89692 * 15 14 13 45 45 H 0.96997 * 120.00274 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.49728 * 58.59294 * 25 10 9 47 47 H 1.09002 * 109.49317 * 178.68061 * 25 10 9 48 48 H 1.08998 * 109.58444 * 246.19999 * 26 7 5 49 49 H 1.09002 * 109.58131 * 6.62199 * 26 7 5 50 50 H 1.07994 * 119.04127 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1441 -0.0059 5 6 4.4063 2.3931 -0.0126 6 8 3.8614 3.4659 0.1540 7 7 5.7393 2.3367 -0.2034 8 6 6.5683 3.5406 -0.0548 9 6 7.3969 3.7290 -1.3295 10 6 8.1898 2.4508 -1.6114 11 6 9.0450 2.6473 -2.8647 12 1 9.5985 1.7346 -3.0851 13 6 8.1423 3.0186 -4.0598 14 6 8.9943 4.0663 -4.8239 15 6 9.6918 4.8102 -3.6578 16 7 9.9810 3.7628 -2.6613 17 6 10.9626 3.8174 -1.7082 18 1 11.2598 2.9193 -1.1870 19 6 11.5718 5.0279 -1.4076 20 7 11.2062 6.1233 -2.0392 21 14 12.9114 5.1022 -0.1079 22 1 14.0389 4.2228 -0.5083 23 1 13.3966 6.4996 0.0236 24 1 12.3639 4.6432 1.1939 25 6 7.2216 1.2863 -1.8322 26 6 6.3912 1.0701 -0.5633 27 7 4.2027 -0.0446 -0.0002 28 6 3.4954 -1.1538 0.0056 29 7 2.1763 -1.1398 0.0055 30 1 -0.3633 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5094 33 1 1.6914 2.1441 0.0004 34 1 7.2344 3.4225 0.7998 35 1 5.9274 4.4094 0.0961 36 1 8.0863 4.5626 -1.1955 37 1 6.7323 3.9373 -2.1680 38 1 8.8358 2.2294 -0.7618 39 1 7.2054 3.4585 -3.7181 40 1 7.9543 2.1451 -4.6841 41 1 8.3601 4.7436 -5.3957 42 1 9.7253 3.5801 -5.4700 43 1 9.0256 5.5622 -3.2351 44 1 10.6169 5.2735 -4.0006 45 1 11.6321 6.9692 -1.8295 46 1 6.5587 1.5174 -2.6660 47 1 7.7863 0.3812 -2.0560 48 1 7.0428 0.7505 0.2499 49 1 5.6333 0.3087 -0.7478 50 1 4.0095 -2.1035 0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004417171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:47 Heat of formation + Delta-G solvation = 36.466959 kcal Electronic energy + Delta-G solvation = -31084.705064 eV Core-core repulsion = 27112.469751 eV Total energy + Delta-G solvation = -3972.235313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.51084 -41.04988 -39.84250 -37.82862 -35.80577 -34.68144 -33.84494 -33.53688 -31.97581 -31.20272 -29.73900 -29.15944 -26.77882 -26.32115 -25.21325 -24.44290 -23.97262 -22.60581 -21.83665 -21.07662 -19.86337 -19.10241 -18.50850 -17.97797 -17.21180 -16.90408 -16.86557 -16.66506 -16.39795 -16.19770 -15.74311 -15.70873 -15.31793 -15.10829 -14.52832 -14.50457 -14.22577 -13.97525 -13.89820 -13.85023 -13.50539 -13.24675 -13.19633 -13.02092 -12.81998 -12.77190 -12.62201 -12.19854 -12.09224 -11.99377 -11.81132 -11.73641 -11.61989 -11.57792 -11.49500 -11.23193 -11.19919 -10.93554 -10.69877 -10.60344 -9.92026 -9.73310 -8.70323 -7.81189 -5.15674 -0.65775 -0.17903 1.45618 1.47295 1.53294 1.55355 1.71880 2.52086 2.64544 2.75702 3.03012 3.24271 3.37763 3.64873 3.69960 3.84623 3.91052 3.95464 4.14719 4.19598 4.22902 4.28068 4.33439 4.36468 4.39917 4.49723 4.59220 4.69224 4.74365 4.78292 4.82017 4.85070 4.88802 4.94410 5.06069 5.08336 5.11253 5.20322 5.22903 5.24537 5.27653 5.43803 5.53586 5.60239 5.66104 5.69559 5.72068 5.73906 5.82511 6.26918 6.30845 6.77908 6.93593 7.16803 7.86558 8.55021 9.30290 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002695 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.086744 B =10385.301464 C =10737.900011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.184 3.816 3 C -0.174 4.174 4 C 0.125 3.875 5 C 0.559 3.441 6 O -0.566 6.566 7 N -0.579 5.579 8 C 0.116 3.884 9 C -0.102 4.102 10 C -0.084 4.084 11 C 0.158 3.842 12 H 0.034 0.966 13 C -0.115 4.115 14 C -0.139 4.139 15 C 0.181 3.819 16 N -0.608 5.608 17 C -0.223 4.223 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.965 3.035 22 H -0.279 1.279 23 H -0.299 1.299 24 H -0.279 1.279 25 C -0.118 4.118 26 C 0.076 3.924 27 N -0.501 5.501 28 C 0.296 3.704 29 N -0.518 5.518 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.063 0.937 43 H -0.007 1.007 44 H 0.027 0.973 45 H 0.244 0.756 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.159 0.841 50 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 -16.797 1.448 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.036 3.964 3 C -0.197 4.197 4 C -0.020 4.020 5 C 0.346 3.654 6 O -0.445 6.445 7 N -0.309 5.309 8 C -0.007 4.007 9 C -0.140 4.140 10 C -0.105 4.105 11 C 0.052 3.948 12 H 0.052 0.948 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.055 3.945 16 N -0.333 5.333 17 C -0.353 4.353 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.597 5.597 21 Si 0.795 3.205 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.205 1.205 25 C -0.157 4.157 26 C -0.045 4.045 27 N -0.219 5.219 28 C 0.010 3.990 29 N -0.233 5.233 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.182 0.818 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.011 0.989 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.085 0.915 49 H 0.175 0.825 50 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -20.475 -16.914 1.631 26.608 hybrid contribution 1.174 1.803 0.855 2.315 sum -19.301 -15.111 2.486 24.638 Atomic orbital electron populations 1.20967 0.84608 1.05603 1.05199 1.22395 0.99527 0.86870 0.87598 1.22939 0.93803 1.02427 1.00555 1.21405 0.92572 0.92023 0.96021 1.18247 0.82215 0.87525 0.77419 1.90752 1.71346 1.30206 1.52205 1.48126 1.05630 1.11773 1.65330 1.21615 0.93145 0.87551 0.98370 1.21635 0.97327 0.98887 0.96129 1.21430 0.95901 0.94328 0.98821 1.21177 0.89439 0.90548 0.93623 0.94844 1.22623 0.97565 0.99062 0.96015 1.22887 0.98939 0.98546 0.97332 1.21128 0.96010 0.89838 0.87500 1.44686 1.35364 1.17584 1.35622 1.19174 1.10684 0.93140 1.12303 0.90789 1.25578 1.02952 0.95277 1.01669 1.70135 1.45738 0.98567 1.45212 0.85347 0.79473 0.75994 0.79720 1.20510 1.22541 1.20539 1.21957 0.97458 0.98479 0.97814 1.23168 0.99331 0.85425 0.96601 1.68290 1.39982 0.98747 1.14836 1.25879 0.86755 0.97595 0.88783 1.68353 1.10804 1.30565 1.13609 0.87928 0.88217 0.88821 0.81842 0.91430 0.90558 0.93209 0.92451 0.93400 0.91325 0.89386 0.90635 0.91849 0.98908 0.95493 0.94696 0.91650 0.89067 0.91501 0.82501 0.74606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 71.23 0.73 -0.02 16 2 C 0.18 2.68 6.83 42.64 0.29 2.97 16 3 C -0.17 -3.23 9.41 22.71 0.21 -3.01 16 4 C 0.12 2.86 6.61 41.98 0.28 3.14 16 5 C 0.56 16.53 7.67 86.97 0.67 17.20 16 6 O -0.57 -19.94 15.89 -3.62 -0.06 -20.00 16 7 N -0.58 -16.89 2.97 -821.63 -2.44 -19.33 16 8 C 0.12 3.89 6.44 86.36 0.56 4.44 16 9 C -0.10 -3.78 4.92 30.67 0.15 -3.63 16 10 C -0.08 -2.90 1.92 -10.77 -0.02 -2.92 16 11 C 0.16 6.09 2.93 45.33 0.13 6.22 16 12 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 13 C -0.12 -3.75 5.23 31.78 0.17 -3.58 16 14 C -0.14 -5.11 7.08 31.99 0.23 -4.88 16 15 C 0.18 8.90 5.41 86.85 0.47 9.37 16 16 N -0.61 -30.05 2.37 -668.30 -1.58 -31.63 16 17 C -0.22 -12.21 9.80 84.03 0.82 -11.39 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 19 C -0.06 -3.49 5.47 84.86 0.46 -3.02 16 20 N -0.95 -57.21 10.60 21.65 0.23 -56.98 16 21 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C -0.12 -3.02 5.13 30.67 0.16 -2.86 16 26 C 0.08 1.83 5.93 86.36 0.51 2.35 16 27 N -0.50 -9.60 6.31 -189.16 -1.19 -10.79 16 28 C 0.30 4.27 12.28 180.92 2.22 6.49 16 29 N -0.52 -8.08 10.36 -188.11 -1.95 -10.03 16 30 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 0.43 8.10 -2.39 -0.02 0.41 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.16 2.81 7.76 -2.91 -0.02 2.78 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.72 7.00 -2.38 -0.02 2.70 16 36 H 0.05 2.32 7.59 -2.39 -0.02 2.31 16 37 H 0.06 2.11 6.02 -2.39 -0.01 2.09 16 38 H 0.05 1.85 7.98 -2.39 -0.02 1.83 16 39 H 0.07 2.23 5.50 -2.39 -0.01 2.22 16 40 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H -0.01 -0.39 8.04 -2.39 -0.02 -0.41 16 44 H 0.03 1.51 6.97 -2.39 -0.02 1.49 16 45 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.06 1.63 7.25 -2.39 -0.02 1.61 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.16 3.30 4.01 -61.61 -0.25 3.05 16 50 H 0.24 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -71.43 386.34 3.78 -67.65 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.71 Total: 16.09 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 8.04 Total: 16.86 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -6.94 Total: -128.76 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.43 3.78 -67.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004417171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.122 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds