Wall clock time and date at job start Wed Apr 1 2020 03:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38820 * 120.42043 * 2 1 4 4 C 1.38774 * 118.51016 * 179.97438 * 3 2 1 5 5 N 1.32125 * 119.16572 * 359.97438 * 4 3 2 6 6 C 1.32447 * 120.76647 * 359.97438 * 5 4 3 7 7 C 1.48543 * 119.18241 * 180.02562 * 6 5 4 8 8 O 1.21468 * 119.99711 * 188.39928 * 7 6 5 9 9 N 1.34777 * 120.00162 * 8.40059 * 7 6 5 10 10 C 1.46922 * 120.62739 * 190.64897 * 9 7 6 11 11 C 1.52767 * 109.00702 * 233.58042 * 10 9 7 12 12 C 1.53040 * 109.38254 * 305.59130 * 11 10 9 13 13 C 1.53005 * 109.45744 * 181.25861 * 12 11 10 14 14 H 1.09001 * 109.87017 * 60.54442 * 13 12 11 15 15 C 1.54323 * 109.87934 * 299.37018 * 13 12 11 16 16 C 1.55159 * 102.94135 * 218.38644 * 15 13 12 17 17 C 1.54915 * 101.57914 * 35.50451 * 16 15 13 18 18 N 1.47018 * 109.88155 * 181.56318 * 13 12 11 19 19 C 1.36934 * 125.64778 * 298.39426 * 18 13 12 20 20 H 1.08000 * 120.00076 * 341.15880 * 19 18 13 21 21 C 1.38814 * 120.00080 * 161.16473 * 19 18 13 22 22 N 1.31615 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47395 * 59.99588 * 23 21 19 25 25 H 1.48502 * 109.47369 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47045 * 299.99381 * 23 21 19 27 27 C 1.53039 * 109.53633 * 61.23885 * 12 11 10 28 28 C 1.46919 * 120.63080 * 10.92571 * 9 7 6 29 29 N 1.32097 * 120.41809 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47150 * 90.00350 * 1 2 3 31 31 H 1.09004 * 109.47566 * 210.00163 * 1 2 3 32 32 H 1.08996 * 109.47269 * 330.00358 * 1 2 3 33 33 H 1.08006 * 120.74464 * 0.24786 * 3 2 1 34 34 H 1.08005 * 120.42175 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.59126 * 353.42029 * 10 9 7 36 36 H 1.09009 * 109.59006 * 113.84598 * 10 9 7 37 37 H 1.08996 * 109.56188 * 185.55539 * 11 10 9 38 38 H 1.08997 * 109.38240 * 65.51872 * 11 10 9 39 39 H 1.08997 * 109.45988 * 301.21442 * 12 11 10 40 40 H 1.08993 * 110.72580 * 336.75073 * 15 13 12 41 41 H 1.09005 * 110.71940 * 100.02931 * 15 13 12 42 42 H 1.08998 * 111.00978 * 277.43466 * 16 15 13 43 43 H 1.09001 * 111.00604 * 153.57417 * 16 15 13 44 44 H 1.08994 * 110.37042 * 204.14844 * 17 16 15 45 45 H 1.09004 * 110.45483 * 81.87339 * 17 16 15 46 46 H 0.96997 * 119.99882 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.49582 * 178.67981 * 27 12 11 48 48 H 1.08997 * 109.52510 * 58.60501 * 27 12 11 49 49 H 1.09000 * 109.58936 * 246.15960 * 28 9 7 50 50 H 1.09001 * 109.58770 * 6.58687 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5968 1.1508 0.0005 5 7 4.2019 -0.0237 0.0016 6 6 3.5005 -1.1472 0.0026 7 6 4.2170 -2.4484 0.0043 8 8 3.5983 -3.4825 -0.1485 9 7 5.5534 -2.4816 0.1753 10 6 6.3063 -3.7229 -0.0502 11 6 7.1394 -4.0323 1.1924 12 6 8.0107 -2.8215 1.5341 13 6 8.8689 -3.1408 2.7599 14 1 9.5163 -3.9916 2.5474 15 6 7.9617 -3.4563 3.9678 16 6 8.7160 -2.7941 5.1511 17 6 9.3073 -1.5317 4.4755 18 7 9.6828 -1.9704 3.1191 19 6 10.6319 -1.3842 2.3250 20 1 11.0537 -1.9309 1.4945 21 6 11.0520 -0.0875 2.5874 22 7 10.5378 0.5788 3.5992 23 14 12.3463 0.7123 1.5036 24 1 11.8526 0.7714 0.1043 25 1 12.6181 2.0886 1.9906 26 1 13.5968 -0.0870 1.5540 27 6 7.1167 -1.6169 1.8373 28 6 6.2843 -1.2787 0.5966 29 7 2.1758 -1.1391 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6890 2.1432 0.0040 34 1 4.1745 2.0634 0.0010 35 1 5.6124 -4.5425 -0.2366 36 1 6.9672 -3.5988 -0.9082 37 1 7.7759 -4.8958 0.9993 38 1 6.4748 -4.2499 2.0284 39 1 8.6580 -2.5896 0.6884 40 1 6.9771 -3.0071 3.8385 41 1 7.8791 -4.5328 4.1173 42 1 9.5072 -3.4449 5.5233 43 1 8.0269 -2.5228 5.9509 44 1 10.1864 -1.1867 5.0196 45 1 8.5588 -0.7408 4.4249 46 1 10.8311 1.4851 3.7823 47 1 7.7373 -0.7612 2.1035 48 1 6.4520 -1.8563 2.6673 49 1 6.9433 -0.9511 -0.2074 50 1 5.5757 -0.4861 0.8370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004423505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:53 Heat of formation + Delta-G solvation = 56.676516 kcal Electronic energy + Delta-G solvation = -31348.391206 eV Core-core repulsion = 27377.032245 eV Total energy + Delta-G solvation = -3971.358961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.59255 -39.74846 -38.27878 -36.32957 -34.91838 -33.07460 -32.77816 -32.07657 -30.72265 -29.30123 -28.92114 -27.75438 -25.77703 -24.56972 -23.65912 -23.24663 -22.81444 -21.31224 -20.25625 -19.65113 -18.37589 -17.97608 -17.13380 -16.55268 -16.36314 -15.86095 -15.83060 -15.04568 -14.80362 -14.68517 -14.54183 -13.93645 -13.86288 -13.84438 -13.51986 -13.43762 -13.07725 -12.85487 -12.70715 -12.55235 -12.10787 -12.04024 -11.78857 -11.47784 -11.27051 -11.07324 -10.94178 -10.91251 -10.79291 -10.69395 -10.41568 -10.13303 -10.03324 -9.93292 -9.83141 -9.79818 -9.65644 -9.53299 -9.45797 -8.94507 -8.52911 -8.39296 -6.67476 -5.72916 -3.07910 0.23399 0.75630 2.57013 2.71067 3.40095 3.45357 3.45751 3.60564 3.73284 3.90125 4.14117 4.51104 4.54025 4.69447 4.85797 5.06797 5.14557 5.18507 5.26300 5.38367 5.40243 5.49270 5.52023 5.55102 5.58596 5.74274 5.80671 5.82101 5.92964 5.94820 5.98668 6.06724 6.26372 6.31310 6.31576 6.44009 6.48894 6.56818 6.61098 6.65925 6.71382 6.79892 6.84611 7.06066 7.15185 7.25805 7.43602 7.55395 7.69079 7.69845 7.82658 8.16346 8.33523 9.24122 9.85560 10.57776 11.40043 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.003310 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.659678 B = 8457.759467 C = 9393.521147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.170 3.830 3 C -0.212 4.212 4 C 0.143 3.857 5 N -0.483 5.483 6 C 0.294 3.706 7 C 0.580 3.420 8 O -0.518 6.518 9 N -0.581 5.581 10 C 0.114 3.886 11 C -0.128 4.128 12 C -0.092 4.092 13 C 0.166 3.834 14 H 0.030 0.970 15 C -0.127 4.127 16 C -0.150 4.150 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.224 4.224 20 H 0.070 0.930 21 C -0.001 4.001 22 N -0.915 5.915 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.118 4.118 28 C 0.080 3.920 29 N -0.472 5.472 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.028 0.972 46 H 0.252 0.748 47 H 0.098 0.902 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 0.558 -5.672 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.023 3.977 3 C -0.234 4.234 4 C -0.021 4.021 5 N -0.200 5.200 6 C 0.024 3.976 7 C 0.364 3.636 8 O -0.392 6.392 9 N -0.314 5.314 10 C -0.008 4.008 11 C -0.167 4.167 12 C -0.113 4.113 13 C 0.059 3.941 14 H 0.047 0.953 15 C -0.165 4.165 16 C -0.189 4.189 17 C 0.052 3.948 18 N -0.315 5.315 19 C -0.353 4.353 20 H 0.088 0.912 21 C -0.198 4.198 22 N -0.561 5.561 23 Si 0.734 3.266 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.156 4.156 28 C -0.041 4.041 29 N -0.188 5.188 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.196 0.804 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.116 0.884 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.564 -0.680 -5.755 17.548 hybrid contribution 0.445 1.527 -0.583 1.694 sum -16.118 0.848 -6.338 17.340 Atomic orbital electron populations 1.20809 0.87289 1.04369 1.03909 1.21887 0.97958 0.87840 0.90008 1.23000 0.96656 1.00656 1.03096 1.23551 0.92329 0.96611 0.89654 1.68676 1.39336 0.98956 1.13043 1.23018 0.87347 0.93166 0.94072 1.17289 0.82053 0.85757 0.78548 1.90763 1.66389 1.32460 1.49585 1.47984 1.05245 1.13187 1.64952 1.21623 0.94775 0.86047 0.98349 1.21922 0.98393 0.99267 0.97132 1.21575 0.96039 0.93417 1.00283 1.20941 0.90475 0.91083 0.91619 0.95250 1.22650 0.98853 0.98899 0.96112 1.23004 0.98921 1.00219 0.96762 1.21321 0.97860 0.90733 0.84910 1.44438 1.41167 1.32277 1.13609 1.18849 1.12892 0.94573 1.08998 0.91223 1.24910 1.00150 0.96178 0.98551 1.69922 1.45196 1.11423 1.29599 0.86335 0.81442 0.78561 0.80221 1.21121 1.21741 1.21289 1.21921 0.97555 1.00493 0.95647 1.22943 0.96940 0.86842 0.97416 1.68113 1.08542 1.30417 1.11687 0.89454 0.89595 0.89847 0.82970 0.80438 0.89514 0.91322 0.91104 0.91761 0.91288 0.91618 0.92838 0.92632 0.92756 0.92342 0.95423 0.93776 0.88397 0.92976 0.91572 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.22 36.00 0.37 -0.31 16 2 C 0.17 1.72 6.82 -82.27 -0.56 1.16 16 3 C -0.21 -1.69 9.87 -39.17 -0.39 -2.07 16 4 C 0.14 1.36 11.30 -17.23 -0.19 1.17 16 5 N -0.48 -6.39 6.22 -11.12 -0.07 -6.46 16 6 C 0.29 4.47 7.41 -157.07 -1.16 3.30 16 7 C 0.58 9.87 7.68 -12.01 -0.09 9.78 16 8 O -0.52 -10.00 16.33 5.39 0.09 -9.91 16 9 N -0.58 -9.20 2.98 -173.89 -0.52 -9.72 16 10 C 0.11 1.66 6.42 -3.93 -0.03 1.64 16 11 C -0.13 -1.91 5.09 -26.83 -0.14 -2.05 16 12 C -0.09 -1.64 1.92 -90.58 -0.17 -1.81 16 13 C 0.17 3.29 2.95 -66.95 -0.20 3.10 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.13 -2.24 5.22 -24.90 -0.13 -2.37 16 16 C -0.15 -2.85 7.09 -24.58 -0.17 -3.02 16 17 C 0.18 4.15 5.36 -2.53 -0.01 4.13 16 18 N -0.59 -14.15 2.29 -162.57 -0.37 -14.52 16 19 C -0.22 -5.92 9.81 -15.06 -0.15 -6.07 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C 0.00 -0.02 5.46 -17.43 -0.10 -0.11 16 22 N -0.92 -25.74 10.75 55.49 0.60 -25.15 16 23 Si 0.90 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.12 -2.13 4.93 -26.61 -0.13 -2.26 16 28 C 0.08 1.28 5.79 -3.72 -0.02 1.26 16 29 N -0.47 -6.77 10.08 -7.37 -0.07 -6.84 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.32 8.10 -51.93 -0.42 -0.11 16 33 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 34 H 0.18 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 36 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16 39 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 40 H 0.07 1.15 5.49 -51.93 -0.29 0.86 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.54 7.24 -51.93 -0.38 1.16 16 45 H 0.03 0.70 7.96 -51.93 -0.41 0.29 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 47 H 0.10 2.14 7.54 -51.93 -0.39 1.75 16 48 H 0.05 0.95 6.11 -51.93 -0.32 0.63 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.13 2.01 4.21 -77.04 -0.32 1.68 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -32.19 387.21 -10.69 -42.88 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.88 Total: 2.01 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -3.28 Total: 5.45 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.44 Total: -62.69 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.19 -10.69 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004423505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.561 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds