Wall clock time and date at job start Wed Apr 1 2020 03:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38820 * 120.42043 * 2 1 4 4 C 1.38774 * 118.51016 * 179.97438 * 3 2 1 5 5 N 1.32125 * 119.16572 * 359.97438 * 4 3 2 6 6 C 1.32447 * 120.76647 * 359.97438 * 5 4 3 7 7 C 1.48543 * 119.18241 * 180.02562 * 6 5 4 8 8 O 1.21468 * 119.99711 * 188.39928 * 7 6 5 9 9 N 1.34777 * 120.00162 * 8.40059 * 7 6 5 10 10 C 1.46922 * 120.62739 * 190.64897 * 9 7 6 11 11 C 1.52767 * 109.00702 * 233.58042 * 10 9 7 12 12 C 1.53040 * 109.38254 * 305.59130 * 11 10 9 13 13 C 1.53005 * 109.45744 * 181.25861 * 12 11 10 14 14 H 1.09001 * 109.87017 * 60.54442 * 13 12 11 15 15 C 1.54323 * 109.87934 * 299.37018 * 13 12 11 16 16 C 1.55159 * 102.94135 * 218.38644 * 15 13 12 17 17 C 1.54915 * 101.57914 * 35.50451 * 16 15 13 18 18 N 1.47018 * 109.88155 * 181.56318 * 13 12 11 19 19 C 1.36934 * 125.64778 * 298.39426 * 18 13 12 20 20 H 1.08000 * 120.00076 * 341.15880 * 19 18 13 21 21 C 1.38814 * 120.00080 * 161.16473 * 19 18 13 22 22 N 1.31615 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47395 * 59.99588 * 23 21 19 25 25 H 1.48502 * 109.47369 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47045 * 299.99381 * 23 21 19 27 27 C 1.53039 * 109.53633 * 61.23885 * 12 11 10 28 28 C 1.46919 * 120.63080 * 10.92571 * 9 7 6 29 29 N 1.32097 * 120.41809 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47150 * 90.00350 * 1 2 3 31 31 H 1.09004 * 109.47566 * 210.00163 * 1 2 3 32 32 H 1.08996 * 109.47269 * 330.00358 * 1 2 3 33 33 H 1.08006 * 120.74464 * 0.24786 * 3 2 1 34 34 H 1.08005 * 120.42175 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.59126 * 353.42029 * 10 9 7 36 36 H 1.09009 * 109.59006 * 113.84598 * 10 9 7 37 37 H 1.08996 * 109.56188 * 185.55539 * 11 10 9 38 38 H 1.08997 * 109.38240 * 65.51872 * 11 10 9 39 39 H 1.08997 * 109.45988 * 301.21442 * 12 11 10 40 40 H 1.08993 * 110.72580 * 336.75073 * 15 13 12 41 41 H 1.09005 * 110.71940 * 100.02931 * 15 13 12 42 42 H 1.08998 * 111.00978 * 277.43466 * 16 15 13 43 43 H 1.09001 * 111.00604 * 153.57417 * 16 15 13 44 44 H 1.08994 * 110.37042 * 204.14844 * 17 16 15 45 45 H 1.09004 * 110.45483 * 81.87339 * 17 16 15 46 46 H 0.96997 * 119.99882 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.49582 * 178.67981 * 27 12 11 48 48 H 1.08997 * 109.52510 * 58.60501 * 27 12 11 49 49 H 1.09000 * 109.58936 * 246.15960 * 28 9 7 50 50 H 1.09001 * 109.58770 * 6.58687 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5968 1.1508 0.0005 5 7 4.2019 -0.0237 0.0016 6 6 3.5005 -1.1472 0.0026 7 6 4.2170 -2.4484 0.0043 8 8 3.5983 -3.4825 -0.1485 9 7 5.5534 -2.4816 0.1753 10 6 6.3063 -3.7229 -0.0502 11 6 7.1394 -4.0323 1.1924 12 6 8.0107 -2.8215 1.5341 13 6 8.8689 -3.1408 2.7599 14 1 9.5163 -3.9916 2.5474 15 6 7.9617 -3.4563 3.9678 16 6 8.7160 -2.7941 5.1511 17 6 9.3073 -1.5317 4.4755 18 7 9.6828 -1.9704 3.1191 19 6 10.6319 -1.3842 2.3250 20 1 11.0537 -1.9309 1.4945 21 6 11.0520 -0.0875 2.5874 22 7 10.5378 0.5788 3.5992 23 14 12.3463 0.7123 1.5036 24 1 11.8526 0.7714 0.1043 25 1 12.6181 2.0886 1.9906 26 1 13.5968 -0.0870 1.5540 27 6 7.1167 -1.6169 1.8373 28 6 6.2843 -1.2787 0.5966 29 7 2.1758 -1.1391 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6890 2.1432 0.0040 34 1 4.1745 2.0634 0.0010 35 1 5.6124 -4.5425 -0.2366 36 1 6.9672 -3.5988 -0.9082 37 1 7.7759 -4.8958 0.9993 38 1 6.4748 -4.2499 2.0284 39 1 8.6580 -2.5896 0.6884 40 1 6.9771 -3.0071 3.8385 41 1 7.8791 -4.5328 4.1173 42 1 9.5072 -3.4449 5.5233 43 1 8.0269 -2.5228 5.9509 44 1 10.1864 -1.1867 5.0196 45 1 8.5588 -0.7408 4.4249 46 1 10.8311 1.4851 3.7823 47 1 7.7373 -0.7612 2.1035 48 1 6.4520 -1.8563 2.6673 49 1 6.9433 -0.9511 -0.2074 50 1 5.5757 -0.4861 0.8370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004423505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:51 Heat of formation + Delta-G solvation = 38.567113 kcal Electronic energy + Delta-G solvation = -31349.176488 eV Core-core repulsion = 27377.032245 eV Total energy + Delta-G solvation = -3972.144244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.52156 -41.00681 -39.77969 -37.78510 -35.79387 -34.65852 -33.92423 -33.50412 -32.01374 -31.15601 -29.68552 -29.16381 -26.95518 -26.40902 -24.93953 -24.23395 -24.01125 -22.68316 -21.86171 -21.11266 -19.78929 -18.91267 -18.63624 -18.10643 -17.38731 -16.95155 -16.84672 -16.75656 -16.32830 -15.77099 -15.69122 -15.60255 -15.30780 -15.00470 -14.55793 -14.46258 -14.25115 -13.94440 -13.93535 -13.81031 -13.50379 -13.27991 -13.18242 -13.01288 -12.79482 -12.76861 -12.58183 -12.28456 -12.10944 -12.02430 -11.86695 -11.80554 -11.66424 -11.52406 -11.29920 -11.14772 -11.04730 -10.85694 -10.61252 -10.56693 -10.02229 -9.70608 -8.64235 -7.79317 -5.14753 -0.65755 -0.01180 1.46118 1.48982 1.50053 1.56075 1.60095 2.54870 2.66199 2.77478 3.01794 3.39955 3.49851 3.65947 3.70173 3.92046 3.97366 4.01677 4.12975 4.20002 4.25634 4.28656 4.33108 4.37404 4.45146 4.55995 4.61506 4.67659 4.71494 4.77237 4.80213 4.90404 4.93396 4.97239 5.05128 5.07473 5.12066 5.18268 5.22093 5.27685 5.34818 5.45293 5.54512 5.57042 5.66416 5.71881 5.75526 5.83914 5.88914 6.19360 6.33977 6.70751 6.98697 7.19835 7.88347 8.58848 9.32703 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.003310 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.659678 B = 8457.759467 C = 9393.521147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 C -0.183 4.183 4 C 0.131 3.869 5 N -0.502 5.502 6 C 0.265 3.735 7 C 0.577 3.423 8 O -0.551 6.551 9 N -0.580 5.580 10 C 0.112 3.888 11 C -0.116 4.116 12 C -0.084 4.084 13 C 0.159 3.841 14 H 0.030 0.970 15 C -0.116 4.116 16 C -0.138 4.138 17 C 0.184 3.816 18 N -0.606 5.606 19 C -0.228 4.228 20 H 0.070 0.930 21 C -0.053 4.053 22 N -0.942 5.942 23 Si 0.963 3.037 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.283 1.283 27 C -0.104 4.104 28 C 0.092 3.908 29 N -0.504 5.504 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.201 0.799 34 H 0.211 0.789 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.020 0.980 45 H 0.000 1.000 46 H 0.245 0.755 47 H 0.055 0.945 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.575 0.910 -6.378 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.007 3.993 3 C -0.204 4.204 4 C -0.032 4.032 5 N -0.220 5.220 6 C -0.005 4.005 7 C 0.361 3.639 8 O -0.428 6.428 9 N -0.312 5.312 10 C -0.009 4.009 11 C -0.154 4.154 12 C -0.105 4.105 13 C 0.052 3.948 14 H 0.048 0.952 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.058 3.942 18 N -0.330 5.330 19 C -0.357 4.357 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.590 5.590 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.209 1.209 27 C -0.142 4.142 28 C -0.030 4.030 29 N -0.221 5.221 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.218 0.782 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.039 0.961 45 H 0.018 0.982 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.299 -0.345 -6.474 19.414 hybrid contribution 0.911 1.493 -0.375 1.788 sum -17.389 1.148 -6.850 18.724 Atomic orbital electron populations 1.20946 0.84653 1.05400 1.05019 1.22638 0.99678 0.87572 0.89426 1.23496 0.95940 1.01776 0.99192 1.24211 0.93753 0.96277 0.89003 1.68464 1.40097 0.99700 1.13780 1.22555 0.87884 0.92859 0.97155 1.17654 0.82108 0.86441 0.77662 1.90720 1.66973 1.33850 1.51214 1.48003 1.05213 1.13324 1.64649 1.21710 0.94820 0.85828 0.98592 1.21811 0.98028 0.98314 0.97276 1.21420 0.95843 0.94635 0.98560 1.21150 0.90746 0.89359 0.93512 0.95202 1.22608 0.98012 1.00660 0.94046 1.22887 0.99450 0.97838 0.97510 1.21081 0.95658 0.92318 0.85108 1.44625 1.41528 1.32996 1.13819 1.19112 1.13086 0.94750 1.08799 0.91235 1.25579 1.02413 0.96868 0.99866 1.70114 1.46657 1.11188 1.31089 0.85392 0.79291 0.77206 0.78869 1.20374 1.22290 1.20949 1.21697 0.97024 0.98950 0.96569 1.22805 0.96716 0.87337 0.96133 1.68063 1.08389 1.32936 1.12756 0.88138 0.90811 0.86551 0.78177 0.77241 0.89228 0.90230 0.89039 0.91656 0.93159 0.91419 0.89746 0.91941 0.90583 0.96121 0.98224 0.94582 0.92624 0.93202 0.92068 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.22 71.23 0.73 -0.29 16 2 C 0.15 2.77 6.82 42.66 0.29 3.07 16 3 C -0.18 -2.26 9.87 22.54 0.22 -2.04 16 4 C 0.13 2.18 11.30 84.78 0.96 3.14 16 5 N -0.50 -13.00 6.22 -189.10 -1.18 -14.18 16 6 C 0.26 8.08 7.41 137.69 1.02 9.10 16 7 C 0.58 19.90 7.68 86.99 0.67 20.57 16 8 O -0.55 -21.70 16.33 -3.62 -0.06 -21.76 16 9 N -0.58 -18.42 2.98 -822.37 -2.45 -20.87 16 10 C 0.11 3.18 6.42 86.22 0.55 3.74 16 11 C -0.12 -3.28 5.09 30.53 0.16 -3.12 16 12 C -0.08 -2.97 1.92 -10.77 -0.02 -2.99 16 13 C 0.16 6.20 2.95 45.34 0.13 6.34 16 14 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 15 C -0.12 -3.87 5.22 31.78 0.17 -3.71 16 16 C -0.14 -5.10 7.09 31.99 0.23 -4.87 16 17 C 0.18 8.89 5.36 86.86 0.47 9.35 16 18 N -0.61 -29.64 2.29 -668.26 -1.53 -31.17 16 19 C -0.23 -12.30 9.81 84.03 0.82 -11.48 16 20 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 21 C -0.05 -2.95 5.46 84.86 0.46 -2.48 16 22 N -0.94 -55.14 10.75 21.65 0.23 -54.91 16 23 Si 0.96 44.99 29.55 68.60 2.03 47.01 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.10 -3.84 4.93 30.67 0.15 -3.69 16 28 C 0.09 2.98 5.79 86.36 0.50 3.48 16 29 N -0.50 -14.31 10.08 -177.24 -1.79 -16.09 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.12 0.37 8.10 -2.39 -0.02 0.35 16 33 H 0.20 0.49 8.06 -2.91 -0.02 0.46 16 34 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.09 2.55 7.01 -2.39 -0.02 2.53 16 36 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 1.87 7.14 -2.39 -0.02 1.85 16 39 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 40 H 0.07 2.26 5.49 -2.39 -0.01 2.25 16 41 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.02 1.13 7.24 -2.39 -0.02 1.11 16 45 H 0.00 -0.01 7.96 -2.39 -0.02 -0.03 16 46 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.06 2.55 7.54 -2.39 -0.02 2.53 16 48 H 0.05 1.83 6.11 -2.39 -0.01 1.82 16 49 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.14 4.32 4.21 -51.97 -0.22 4.10 16 Total: -1.00 -74.76 387.21 3.50 -71.26 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.73 Total: 16.58 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 7.51 Total: 24.12 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -6.71 Total: -137.22 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.06 Total: -21.76 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.76 3.50 -71.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004423505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.830 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds