Wall clock time and date at job start Wed Apr 1 2020 04:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32129 * 119.90361 * 2 1 4 4 C 1.32086 * 120.07207 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.06436 * 180.02562 * 4 3 2 6 6 C 1.39443 * 119.87455 * 359.97438 * 4 3 2 7 7 C 1.48151 * 120.09507 * 180.02562 * 6 4 3 8 8 O 1.21510 * 120.00330 * 354.13447 * 7 6 4 9 9 N 1.34781 * 119.99321 * 174.13514 * 7 6 4 10 10 C 1.46502 * 119.99362 * 180.02562 * 9 7 6 11 11 H 1.08999 * 115.56949 * 350.69836 * 10 9 7 12 12 C 1.53033 * 117.50128 * 136.41830 * 10 9 7 13 13 C 1.52818 * 117.49534 * 205.00276 * 10 9 7 14 14 C 1.53187 * 117.71309 * 144.90299 * 13 10 9 15 15 C 1.53350 * 108.76642 * 158.87439 * 14 13 10 16 16 N 1.46833 * 108.81677 * 51.30510 * 15 14 13 17 17 C 1.36942 * 120.38239 * 123.10823 * 16 15 14 18 18 H 1.07997 * 119.99979 * 212.25988 * 17 16 15 19 19 C 1.38813 * 119.99807 * 32.26461 * 17 16 15 20 20 N 1.31616 * 120.00003 * 199.90499 * 19 17 16 21 21 Si 1.86804 * 120.00015 * 19.89983 * 19 17 16 22 22 H 1.48498 * 109.47344 * 272.06739 * 21 19 17 23 23 H 1.48500 * 109.47203 * 32.07046 * 21 19 17 24 24 H 1.48507 * 109.46757 * 152.06928 * 21 19 17 25 25 C 1.46842 * 119.23853 * 303.37588 * 16 15 14 26 26 C 1.52863 * 109.07593 * 56.58880 * 25 16 15 27 27 N 1.33002 * 119.80404 * 0.27261 * 6 4 3 28 28 C 1.31799 * 119.92420 * 359.45279 * 27 6 4 29 29 C 1.50704 * 119.93607 * 180.27389 * 28 27 6 30 30 H 1.09001 * 109.47278 * 90.00645 * 1 2 3 31 31 H 1.09007 * 109.47122 * 209.99967 * 1 2 3 32 32 H 1.08997 * 109.47146 * 330.00291 * 1 2 3 33 33 H 1.08995 * 109.46894 * 262.65079 * 5 4 3 34 34 H 1.09006 * 109.46565 * 22.64575 * 5 4 3 35 35 H 1.08994 * 109.46925 * 142.64572 * 5 4 3 36 36 H 0.96994 * 120.00239 * 359.97438 * 9 7 6 37 37 H 1.08998 * 117.50641 * 0.02562 * 12 10 9 38 38 H 1.09005 * 117.52722 * 214.93345 * 12 10 9 39 39 H 1.08996 * 109.59228 * 39.08274 * 14 13 10 40 40 H 1.09004 * 109.58549 * 278.65772 * 14 13 10 41 41 H 1.08997 * 109.57961 * 291.50285 * 15 14 13 42 42 H 1.09006 * 109.58060 * 171.10426 * 15 14 13 43 43 H 0.97000 * 120.00528 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.57725 * 176.42219 * 25 16 15 45 45 H 1.08995 * 109.58244 * 296.82057 * 25 16 15 46 46 H 1.08995 * 109.66960 * 189.04404 * 26 25 16 47 47 H 1.09002 * 109.45183 * 68.65097 * 26 25 16 48 48 H 1.09002 * 109.47186 * 270.27789 * 29 28 27 49 49 H 1.09000 * 109.46842 * 30.27287 * 29 28 27 50 50 H 1.08999 * 109.47203 * 150.27614 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 -0.0005 5 6 4.2377 2.4558 0.0001 6 6 4.1847 -0.0578 -0.0005 7 6 5.6662 -0.0592 -0.0005 8 8 6.2747 0.9870 -0.1080 9 7 6.3389 -1.2210 0.1188 10 6 7.8039 -1.2223 0.1193 11 1 8.2753 -0.2736 -0.1375 12 6 8.5094 -2.1056 1.1508 13 6 8.5085 -2.5034 -0.3251 14 6 9.8220 -2.3618 -1.1004 15 6 10.6071 -3.6741 -0.9848 16 7 9.7255 -4.7877 -1.3572 17 6 10.0774 -5.6412 -2.3687 18 1 9.3139 -6.0897 -2.9869 19 6 11.4155 -5.9298 -2.5993 20 7 11.7938 -6.4093 -3.7652 21 14 12.6792 -5.6374 -1.2550 22 1 13.1773 -4.2410 -1.3391 23 1 12.0508 -5.8599 0.0719 24 1 13.8142 -6.5792 -1.4294 25 6 8.4595 -4.9722 -0.6366 26 6 7.6337 -3.6901 -0.7411 27 7 3.5166 -1.2079 -0.0055 28 6 2.1986 -1.2027 0.0005 29 6 1.4414 -2.5056 0.0011 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.5323 2.7059 -1.0191 34 1 3.5966 3.2432 0.3966 35 1 5.1272 2.3632 0.6232 36 1 5.8531 -2.0561 0.2050 37 1 7.8835 -2.6861 1.8286 38 1 9.4451 -1.7386 1.5726 39 1 10.4093 -1.5462 -0.6786 40 1 9.6070 -2.1558 -2.1490 41 1 10.9487 -3.8061 0.0418 42 1 11.4650 -3.6469 -1.6567 43 1 12.7289 -6.6107 -3.9265 44 1 7.9044 -5.7993 -1.0794 45 1 8.6641 -5.1871 0.4122 46 1 6.7690 -3.7559 -0.0808 47 1 7.3008 -3.5556 -1.7703 48 1 1.2585 -2.8201 -1.0264 49 1 2.0286 -3.2668 0.5149 50 1 0.4895 -2.3725 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016720954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:09 Heat of formation + Delta-G solvation = 58.770223 kcal Electronic energy + Delta-G solvation = -30191.392665 eV Core-core repulsion = 26220.124493 eV Total energy + Delta-G solvation = -3971.268171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84924 -39.96387 -38.60464 -35.88603 -35.35238 -34.69217 -33.16141 -31.74543 -30.57972 -30.45674 -29.39494 -28.63042 -26.62034 -24.19814 -24.09258 -23.06117 -22.96098 -21.75894 -21.06091 -20.63530 -18.73780 -18.44926 -17.64979 -16.49923 -16.24017 -16.17540 -15.57674 -15.29603 -14.89088 -14.73386 -14.25833 -13.97489 -13.91561 -13.78076 -13.66801 -13.52234 -13.35362 -13.06059 -12.98169 -12.91710 -12.60701 -12.52356 -12.30032 -12.26518 -12.14459 -11.91998 -11.88100 -11.69635 -11.30734 -11.10251 -10.72729 -10.60373 -10.37410 -10.27684 -9.97216 -9.83522 -9.61109 -9.47136 -9.38108 -9.29464 -8.71862 -8.45476 -6.88448 -5.95616 -3.34506 0.02586 0.64485 2.41023 2.77754 3.31871 3.32500 3.48387 3.50717 3.52848 3.56576 3.94550 4.03066 4.21674 4.49864 4.53771 4.62879 4.80309 4.80489 4.92142 4.93489 4.98323 5.03026 5.12717 5.16413 5.26408 5.31307 5.39884 5.42795 5.45826 5.49743 5.59694 5.69580 5.82934 5.86538 5.90411 5.93844 6.07015 6.13907 6.18115 6.32697 6.37324 6.42646 6.46977 6.63831 6.71662 6.73268 6.78748 6.96498 7.21995 7.43458 7.97370 8.02343 8.35533 8.96961 9.72723 10.12812 11.20492 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.002411 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.109246 B =11609.001771 C =12505.950356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.108 3.892 3 N -0.443 5.443 4 C 0.140 3.860 5 C -0.105 4.105 6 C 0.023 3.977 7 C 0.578 3.422 8 O -0.525 6.525 9 N -0.673 5.673 10 C 0.070 3.930 11 H 0.136 0.864 12 C -0.182 4.182 13 C -0.099 4.099 14 C -0.098 4.098 15 C 0.132 3.868 16 N -0.604 5.604 17 C -0.262 4.262 18 H 0.082 0.918 19 C 0.027 3.973 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.286 1.286 23 H -0.272 1.272 24 H -0.303 1.303 25 C 0.153 3.847 26 C -0.099 4.099 27 N -0.406 5.406 28 C 0.070 3.930 29 C -0.104 4.104 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.263 0.737 44 H 0.064 0.936 45 H 0.023 0.977 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.135 13.336 10.821 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.034 4.034 3 N -0.159 5.159 4 C 0.000 4.000 5 C -0.162 4.162 6 C -0.118 4.118 7 C 0.363 3.637 8 O -0.402 6.402 9 N -0.322 5.322 10 C -0.035 4.035 11 H 0.154 0.846 12 C -0.220 4.220 13 C -0.100 4.100 14 C -0.138 4.138 15 C 0.006 3.994 16 N -0.327 5.327 17 C -0.391 4.391 18 H 0.100 0.900 19 C -0.173 4.173 20 N -0.550 5.550 21 Si 0.713 3.287 22 H -0.213 1.213 23 H -0.197 1.197 24 H -0.231 1.231 25 C 0.027 3.973 26 C -0.138 4.138 27 N -0.123 5.123 28 C -0.074 4.074 29 C -0.161 4.161 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.248 0.752 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.508 13.998 10.624 27.774 hybrid contribution 0.556 -0.337 0.708 0.961 sum -20.952 13.662 11.332 27.460 Atomic orbital electron populations 1.20858 0.87303 1.04362 1.03949 1.22446 0.98651 0.88896 0.93451 1.68326 1.07792 1.28824 1.10950 1.22359 0.89745 0.96652 0.91254 1.21051 0.99905 0.90526 1.04757 1.21920 0.95584 0.90275 1.04058 1.17527 0.84872 0.84221 0.77093 1.90740 1.68446 1.30885 1.50093 1.45235 1.06309 1.09284 1.71408 1.21944 0.78735 0.97657 1.05165 0.84596 1.23577 1.02308 1.03186 0.92966 1.21944 0.98054 0.94443 0.95593 1.21695 0.93273 0.99046 0.99747 1.21319 0.93703 0.86409 0.97981 1.44256 1.19622 1.29085 1.39743 1.18888 0.92685 1.21614 1.05883 0.90047 1.25394 0.97295 0.97944 0.96631 1.69834 1.16585 1.47498 1.21092 0.86940 0.81185 0.76503 0.84074 1.21319 1.19707 1.23110 1.20777 0.87404 0.94207 0.94948 1.21542 0.96270 0.95154 1.00838 1.68143 1.08721 1.28558 1.06894 1.22130 0.89957 0.97033 0.98286 1.20799 0.99286 0.92100 1.03922 0.89381 0.89481 0.89854 0.89369 0.90973 0.87497 0.75198 0.88781 0.88127 0.92503 0.91088 0.95779 0.90748 0.92746 0.91769 0.95932 0.93061 0.91303 0.89603 0.89798 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 9.78 36.00 0.35 -0.17 16 2 C 0.11 0.97 6.79 -82.28 -0.56 0.41 16 3 N -0.44 -4.94 10.34 -5.23 -0.05 -4.99 16 4 C 0.14 1.67 6.82 -82.03 -0.56 1.11 16 5 C -0.11 -1.10 8.85 36.01 0.32 -0.78 16 6 C 0.02 0.29 6.75 -82.84 -0.56 -0.27 16 7 C 0.58 7.94 7.75 -12.19 -0.09 7.84 16 8 O -0.53 -7.96 12.91 5.36 0.07 -7.89 16 9 N -0.67 -8.80 5.33 -54.73 -0.29 -9.09 16 10 C 0.07 0.97 6.14 -68.01 -0.42 0.55 16 11 H 0.14 1.95 7.40 -51.93 -0.38 1.57 16 12 C -0.18 -2.41 9.86 -26.79 -0.26 -2.67 16 13 C -0.10 -1.53 1.94 -154.49 -0.30 -1.83 16 14 C -0.10 -1.73 5.83 -26.45 -0.15 -1.88 16 15 C 0.13 2.83 4.25 -3.68 -0.02 2.82 16 16 N -0.60 -14.16 2.65 -172.56 -0.46 -14.62 16 17 C -0.26 -7.29 9.96 -15.06 -0.15 -7.44 16 18 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 19 C 0.03 0.77 5.20 -17.43 -0.09 0.68 16 20 N -0.91 -27.77 13.97 55.49 0.78 -27.00 16 21 Si 0.88 22.33 24.53 -169.99 -4.17 18.16 16 22 H -0.29 -6.92 6.47 56.52 0.37 -6.56 16 23 H -0.27 -6.81 7.08 56.52 0.40 -6.41 16 24 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 25 C 0.15 2.94 6.48 -3.93 -0.03 2.92 16 26 C -0.10 -1.58 5.36 -26.71 -0.14 -1.72 16 27 N -0.41 -4.72 9.65 -5.88 -0.06 -4.78 16 28 C 0.07 0.65 6.79 -82.42 -0.56 0.09 16 29 C -0.10 -0.58 9.78 36.01 0.35 -0.23 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.23 5.94 -51.93 -0.31 -0.08 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 1.21 5.89 -51.93 -0.31 0.91 16 36 H 0.41 5.03 6.49 -40.82 -0.26 4.76 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.51 7.48 -51.93 -0.39 0.12 16 42 H 0.07 1.76 4.66 -51.93 -0.24 1.52 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.06 1.24 7.92 -51.93 -0.41 0.82 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.68 6.75 -51.93 -0.35 0.33 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.26 5.94 -51.93 -0.31 -0.05 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -32.86 390.88 -8.79 -41.66 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.63 Total: 3.22 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.87 Total: -0.57 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.08 Total: -60.48 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.07 Total: -7.89 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.17 Total: 18.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.86 -8.79 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016720954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.428 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds