Wall clock time and date at job start Wed Apr 1 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32129 * 119.90361 * 2 1 4 4 C 1.32086 * 120.07207 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.06436 * 180.02562 * 4 3 2 6 6 C 1.39443 * 119.87455 * 359.97438 * 4 3 2 7 7 C 1.48151 * 120.09507 * 180.02562 * 6 4 3 8 8 O 1.21510 * 120.00330 * 354.13447 * 7 6 4 9 9 N 1.34781 * 119.99321 * 174.13514 * 7 6 4 10 10 C 1.46502 * 119.99362 * 180.02562 * 9 7 6 11 11 H 1.08999 * 115.56949 * 350.69836 * 10 9 7 12 12 C 1.53033 * 117.50128 * 136.41830 * 10 9 7 13 13 C 1.52818 * 117.49534 * 205.00276 * 10 9 7 14 14 C 1.53187 * 117.71309 * 144.90299 * 13 10 9 15 15 C 1.53350 * 108.76642 * 158.87439 * 14 13 10 16 16 N 1.46833 * 108.81677 * 51.30510 * 15 14 13 17 17 C 1.36942 * 120.38239 * 123.10823 * 16 15 14 18 18 H 1.07997 * 119.99979 * 212.25988 * 17 16 15 19 19 C 1.38813 * 119.99807 * 32.26461 * 17 16 15 20 20 N 1.31616 * 120.00003 * 199.90499 * 19 17 16 21 21 Si 1.86804 * 120.00015 * 19.89983 * 19 17 16 22 22 H 1.48498 * 109.47344 * 272.06739 * 21 19 17 23 23 H 1.48500 * 109.47203 * 32.07046 * 21 19 17 24 24 H 1.48507 * 109.46757 * 152.06928 * 21 19 17 25 25 C 1.46842 * 119.23853 * 303.37588 * 16 15 14 26 26 C 1.52863 * 109.07593 * 56.58880 * 25 16 15 27 27 N 1.33002 * 119.80404 * 0.27261 * 6 4 3 28 28 C 1.31799 * 119.92420 * 359.45279 * 27 6 4 29 29 C 1.50704 * 119.93607 * 180.27389 * 28 27 6 30 30 H 1.09001 * 109.47278 * 90.00645 * 1 2 3 31 31 H 1.09007 * 109.47122 * 209.99967 * 1 2 3 32 32 H 1.08997 * 109.47146 * 330.00291 * 1 2 3 33 33 H 1.08995 * 109.46894 * 262.65079 * 5 4 3 34 34 H 1.09006 * 109.46565 * 22.64575 * 5 4 3 35 35 H 1.08994 * 109.46925 * 142.64572 * 5 4 3 36 36 H 0.96994 * 120.00239 * 359.97438 * 9 7 6 37 37 H 1.08998 * 117.50641 * 0.02562 * 12 10 9 38 38 H 1.09005 * 117.52722 * 214.93345 * 12 10 9 39 39 H 1.08996 * 109.59228 * 39.08274 * 14 13 10 40 40 H 1.09004 * 109.58549 * 278.65772 * 14 13 10 41 41 H 1.08997 * 109.57961 * 291.50285 * 15 14 13 42 42 H 1.09006 * 109.58060 * 171.10426 * 15 14 13 43 43 H 0.97000 * 120.00528 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.57725 * 176.42219 * 25 16 15 45 45 H 1.08995 * 109.58244 * 296.82057 * 25 16 15 46 46 H 1.08995 * 109.66960 * 189.04404 * 26 25 16 47 47 H 1.09002 * 109.45183 * 68.65097 * 26 25 16 48 48 H 1.09002 * 109.47186 * 270.27789 * 29 28 27 49 49 H 1.09000 * 109.46842 * 30.27287 * 29 28 27 50 50 H 1.08999 * 109.47203 * 150.27614 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 -0.0005 5 6 4.2377 2.4558 0.0001 6 6 4.1847 -0.0578 -0.0005 7 6 5.6662 -0.0592 -0.0005 8 8 6.2747 0.9870 -0.1080 9 7 6.3389 -1.2210 0.1188 10 6 7.8039 -1.2223 0.1193 11 1 8.2753 -0.2736 -0.1375 12 6 8.5094 -2.1056 1.1508 13 6 8.5085 -2.5034 -0.3251 14 6 9.8220 -2.3618 -1.1004 15 6 10.6071 -3.6741 -0.9848 16 7 9.7255 -4.7877 -1.3572 17 6 10.0774 -5.6412 -2.3687 18 1 9.3139 -6.0897 -2.9869 19 6 11.4155 -5.9298 -2.5993 20 7 11.7938 -6.4093 -3.7652 21 14 12.6792 -5.6374 -1.2550 22 1 13.1773 -4.2410 -1.3391 23 1 12.0508 -5.8599 0.0719 24 1 13.8142 -6.5792 -1.4294 25 6 8.4595 -4.9722 -0.6366 26 6 7.6337 -3.6901 -0.7411 27 7 3.5166 -1.2079 -0.0055 28 6 2.1986 -1.2027 0.0005 29 6 1.4414 -2.5056 0.0011 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.5323 2.7059 -1.0191 34 1 3.5966 3.2432 0.3966 35 1 5.1272 2.3632 0.6232 36 1 5.8531 -2.0561 0.2050 37 1 7.8835 -2.6861 1.8286 38 1 9.4451 -1.7386 1.5726 39 1 10.4093 -1.5462 -0.6786 40 1 9.6070 -2.1558 -2.1490 41 1 10.9487 -3.8061 0.0418 42 1 11.4650 -3.6469 -1.6567 43 1 12.7289 -6.6107 -3.9265 44 1 7.9044 -5.7993 -1.0794 45 1 8.6641 -5.1871 0.4122 46 1 6.7690 -3.7559 -0.0808 47 1 7.3008 -3.5556 -1.7703 48 1 1.2585 -2.8201 -1.0264 49 1 2.0286 -3.2668 0.5149 50 1 0.4895 -2.3725 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016720954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:08 Heat of formation + Delta-G solvation = 36.441585 kcal Electronic energy + Delta-G solvation = -30192.360907 eV Core-core repulsion = 26220.124493 eV Total energy + Delta-G solvation = -3972.236414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.63813 -41.06630 -39.82517 -37.37890 -36.19745 -35.39971 -34.51364 -33.56617 -32.06186 -31.20020 -30.43263 -29.75532 -27.38086 -26.04786 -24.78579 -24.50098 -23.91870 -22.97858 -22.35262 -21.70965 -19.93103 -19.57484 -18.77395 -18.18061 -17.40042 -17.06670 -16.98204 -16.24189 -15.94889 -15.90246 -15.71467 -15.48378 -15.17524 -14.68933 -14.56003 -14.46679 -14.35030 -14.11127 -13.95894 -13.84957 -13.79271 -13.72394 -13.45942 -13.38398 -13.16170 -12.97498 -12.81499 -12.61702 -12.49539 -12.44674 -12.28074 -12.15363 -11.88888 -11.66135 -11.50937 -11.35179 -11.21838 -10.80304 -10.66376 -10.22239 -10.07512 -9.68076 -8.80742 -8.17280 -5.52068 -0.77620 -0.12663 1.31400 1.41697 1.46857 1.51991 1.79629 2.42814 2.48904 2.74405 2.87419 2.89602 3.07298 3.20536 3.35962 3.50616 3.69203 3.78347 3.78811 3.88721 3.95238 4.00889 4.14064 4.37218 4.50330 4.53523 4.56906 4.64189 4.67644 4.69828 4.74737 4.77817 4.80648 4.84624 4.86506 4.90430 4.92145 4.96945 4.99812 5.07637 5.10781 5.20609 5.22464 5.29226 5.42931 5.46765 5.49551 5.91452 6.01532 6.14723 6.29568 6.58619 6.96006 6.96358 7.64142 8.06263 9.02934 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.002411 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.109246 B =11609.001771 C =12505.950356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.111 3.889 3 N -0.460 5.460 4 C 0.126 3.874 5 C -0.099 4.099 6 C -0.002 4.002 7 C 0.577 3.423 8 O -0.546 6.546 9 N -0.670 5.670 10 C 0.080 3.920 11 H 0.132 0.868 12 C -0.160 4.160 13 C -0.119 4.119 14 C -0.090 4.090 15 C 0.127 3.873 16 N -0.618 5.618 17 C -0.251 4.251 18 H 0.045 0.955 19 C -0.032 4.032 20 N -0.957 5.957 21 Si 0.948 3.052 22 H -0.269 1.269 23 H -0.262 1.262 24 H -0.311 1.311 25 C 0.148 3.852 26 C -0.086 4.086 27 N -0.421 5.421 28 C 0.066 3.934 29 C -0.102 4.102 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.415 0.585 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.262 0.738 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.377 14.252 13.513 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.032 4.032 3 N -0.176 5.176 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.141 4.141 7 C 0.362 3.638 8 O -0.424 6.424 9 N -0.319 5.319 10 C -0.025 4.025 11 H 0.149 0.851 12 C -0.198 4.198 13 C -0.120 4.120 14 C -0.130 4.130 15 C 0.002 3.998 16 N -0.343 5.343 17 C -0.381 4.381 18 H 0.063 0.937 19 C -0.227 4.227 20 N -0.603 5.603 21 Si 0.776 3.224 22 H -0.196 1.196 23 H -0.187 1.187 24 H -0.239 1.239 25 C 0.024 3.976 26 C -0.125 4.125 27 N -0.138 5.138 28 C -0.079 4.079 29 C -0.159 4.159 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.253 0.747 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -23.761 14.951 13.355 31.088 hybrid contribution 1.016 -0.639 -0.176 1.213 sum -22.745 14.312 13.179 29.931 Atomic orbital electron populations 1.21052 0.84126 1.05885 1.05252 1.23197 1.00624 0.88227 0.91176 1.68398 1.07381 1.30016 1.11775 1.22498 0.90362 0.96794 0.91619 1.20963 0.99622 0.90668 1.04335 1.21739 0.94962 0.91044 1.06355 1.17747 0.85539 0.83970 0.76503 1.90724 1.69102 1.31533 1.51047 1.45178 1.05986 1.09411 1.71341 1.21805 0.79122 0.96581 1.05023 0.85085 1.23678 1.02858 1.01799 0.91511 1.21789 0.97331 0.95304 0.97591 1.21532 0.94473 0.97629 0.99329 1.21348 0.93187 0.87566 0.97672 1.44391 1.21235 1.29219 1.39441 1.18813 0.91919 1.21286 1.06076 0.93709 1.26035 0.99465 0.98774 0.98463 1.69972 1.16933 1.50267 1.23136 0.85879 0.78323 0.76935 0.81245 1.19550 1.18689 1.23946 1.20940 0.85911 0.95787 0.95008 1.21352 0.96829 0.93715 1.00576 1.68135 1.10006 1.28188 1.07514 1.22821 0.89401 0.98788 0.96884 1.20965 1.00057 0.89970 1.04946 0.87892 0.86640 0.89655 0.89732 0.89683 0.88610 0.74687 0.87246 0.86754 0.89821 0.93174 0.94432 0.93392 0.92951 0.92720 0.94268 0.89866 0.93311 0.88586 0.90045 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.78 71.23 0.70 0.04 16 2 C 0.11 1.75 6.79 42.63 0.29 2.04 16 3 N -0.46 -9.68 10.34 -170.47 -1.76 -11.44 16 4 C 0.13 2.95 6.82 42.81 0.29 3.25 16 5 C -0.10 -2.06 8.85 71.24 0.63 -1.43 16 6 C 0.00 -0.04 6.75 41.89 0.28 0.24 16 7 C 0.58 15.54 7.75 86.88 0.67 16.22 16 8 O -0.55 -16.52 12.91 -3.75 -0.05 -16.57 16 9 N -0.67 -16.52 5.33 -445.35 -2.38 -18.90 16 10 C 0.08 2.05 6.14 44.94 0.28 2.32 16 11 H 0.13 3.54 7.40 -2.39 -0.02 3.52 16 12 C -0.16 -3.66 9.86 30.56 0.30 -3.36 16 13 C -0.12 -3.41 1.94 -52.17 -0.10 -3.51 16 14 C -0.09 -3.06 5.83 30.77 0.18 -2.88 16 15 C 0.13 5.32 4.25 86.43 0.37 5.68 16 16 N -0.62 -28.95 2.65 -699.86 -1.85 -30.80 16 17 C -0.25 -14.38 9.96 84.03 0.84 -13.54 16 18 H 0.05 2.83 8.06 -2.91 -0.02 2.80 16 19 C -0.03 -1.91 5.20 84.86 0.44 -1.47 16 20 N -0.96 -60.79 13.97 21.65 0.30 -60.48 16 21 Si 0.95 46.65 24.53 68.60 1.68 48.33 16 22 H -0.27 -12.41 6.47 99.48 0.64 -11.76 16 23 H -0.26 -12.36 7.08 99.48 0.70 -11.66 16 24 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 25 C 0.15 5.56 6.48 86.27 0.56 6.12 16 26 C -0.09 -2.61 5.36 30.61 0.16 -2.44 16 27 N -0.42 -9.25 9.65 -172.52 -1.67 -10.92 16 28 C 0.07 1.08 6.79 42.68 0.29 1.37 16 29 C -0.10 -0.80 9.78 71.24 0.70 -0.11 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 0.06 5.94 -2.38 -0.01 0.04 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.10 2.21 5.89 -2.39 -0.01 2.20 16 36 H 0.42 9.38 6.49 -92.71 -0.60 8.78 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 40 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.04 1.48 7.48 -2.39 -0.02 1.46 16 42 H 0.05 2.24 4.66 -2.38 -0.01 2.23 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.05 2.11 7.92 -2.38 -0.02 2.09 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.08 1.99 6.75 -2.39 -0.02 1.98 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.11 0.17 5.94 -2.39 -0.01 0.16 16 Total: -1.00 -74.48 390.88 1.46 -73.02 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.30 Total: 19.20 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.88 Total: 8.54 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -7.35 Total: -132.53 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.05 Total: -16.57 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.68 Total: 48.33 kcal Total: -74.48 1.46 -73.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016720954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.460 kcal (2) G-P(sol) polarization free energy of solvation -74.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds