Wall clock time and date at job start Wed Apr 1 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31887 * 118.95139 * 2 1 4 4 C 1.32138 * 120.96287 * 179.72526 * 3 2 1 5 5 C 1.39967 * 118.92187 * 0.52208 * 4 3 2 6 6 C 1.47837 * 120.93703 * 179.74248 * 5 4 3 7 7 O 1.21545 * 120.00253 * 126.59146 * 6 5 4 8 8 N 1.34775 * 119.99713 * 306.86422 * 6 5 4 9 9 C 1.47072 * 120.84440 * 3.86752 * 8 6 5 10 10 C 1.52671 * 109.29918 * 233.36627 * 9 8 6 11 11 C 1.53141 * 109.69260 * 306.24885 * 10 9 8 12 12 C 1.52825 * 109.26070 * 60.71205 * 11 10 9 13 13 H 1.09006 * 109.47096 * 57.99416 * 12 11 10 14 14 C 1.53067 * 110.34093 * 178.52813 * 12 11 10 15 15 N 1.47066 * 108.33154 * 175.44366 * 14 12 11 16 16 C 1.36941 * 120.47234 * 126.70106 * 15 14 12 17 17 H 1.07991 * 120.00664 * 212.98736 * 16 15 14 18 18 C 1.38816 * 119.99579 * 32.98223 * 16 15 14 19 19 N 1.31616 * 120.00159 * 12.40644 * 18 16 15 20 20 Si 1.86796 * 120.00056 * 192.39964 * 18 16 15 21 21 H 1.48508 * 109.46977 * 60.00351 * 20 18 16 22 22 H 1.48499 * 109.47437 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47308 * 300.00666 * 20 18 16 24 24 C 1.46870 * 119.05972 * 306.68017 * 15 14 12 25 25 C 1.53310 * 109.09756 * 52.65633 * 24 15 14 26 26 C 1.46716 * 120.84436 * 184.14575 * 8 6 5 27 27 H 1.09000 * 109.52938 * 245.42623 * 26 8 6 28 28 C 1.39927 * 118.12190 * 359.46652 * 5 4 3 29 29 C 1.50701 * 120.53851 * 180.25278 * 28 5 4 30 30 N 1.31850 * 118.95086 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47405 * 270.02944 * 1 2 3 32 32 H 1.09005 * 109.46718 * 30.02429 * 1 2 3 33 33 H 1.08999 * 109.47169 * 150.02582 * 1 2 3 34 34 H 1.08000 * 120.53326 * 180.26063 * 4 3 2 35 35 H 1.08999 * 109.54192 * 353.29008 * 9 8 6 36 36 H 1.08998 * 109.54317 * 113.55408 * 9 8 6 37 37 H 1.08996 * 109.51552 * 186.11116 * 10 9 8 38 38 H 1.08998 * 109.29269 * 66.25169 * 10 9 8 39 39 H 1.08995 * 109.51246 * 300.77618 * 11 10 9 40 40 H 1.09001 * 109.50525 * 180.64293 * 11 10 9 41 41 H 1.09007 * 109.68636 * 55.73926 * 14 12 11 42 42 H 1.08999 * 109.72580 * 295.17673 * 14 12 11 43 43 H 0.96998 * 120.00533 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.52922 * 292.76969 * 24 15 14 45 45 H 1.09001 * 109.59130 * 172.57897 * 24 15 14 46 46 H 1.09004 * 109.55309 * 186.05468 * 25 24 15 47 47 H 1.08997 * 109.56242 * 65.73824 * 25 24 15 48 48 H 1.09004 * 109.47186 * 94.24656 * 29 28 5 49 49 H 1.08992 * 109.47428 * 214.24777 * 29 28 5 50 50 H 1.09006 * 109.47050 * 334.25277 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4660 1.2004 0.0054 5 6 4.1855 -0.0001 0.0001 6 6 5.6639 -0.0002 0.0001 7 8 6.2716 -0.6314 0.8424 8 7 6.3377 0.7042 -0.9306 9 6 5.6237 1.5464 -1.9021 10 6 6.0611 1.1683 -3.3151 11 6 7.5876 1.2362 -3.4183 12 6 8.2041 0.2482 -2.4287 13 1 7.8387 -0.7562 -2.6426 14 6 9.7308 0.2694 -2.5370 15 7 10.2807 -0.6111 -1.4952 16 6 11.1617 -1.6073 -1.8218 17 1 11.1637 -2.5312 -1.2627 18 6 12.0521 -1.4296 -2.8719 19 7 12.2238 -0.2337 -3.3940 20 14 13.0068 -2.8878 -3.5438 21 1 12.0566 -3.9115 -4.0485 22 1 13.8832 -2.4365 -4.6544 23 1 13.8390 -3.4751 -2.4631 24 6 9.8720 -0.4064 -0.0995 25 6 8.3409 -0.3945 -0.0217 26 6 7.8019 0.6456 -1.0041 27 1 8.2182 1.6239 -0.7639 28 6 3.4660 -1.2002 0.0006 29 6 4.1855 -2.5244 0.0008 30 7 2.1452 -1.1537 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 3.9817 2.1494 0.0096 35 1 4.5498 1.3899 -1.8004 36 1 5.8598 2.5946 -1.7190 37 1 5.6179 1.8605 -4.0310 38 1 5.7271 0.1547 -3.5365 39 1 7.9239 2.2456 -3.1820 40 1 7.8958 0.9769 -4.4312 41 1 10.0954 1.2859 -2.3888 42 1 10.0349 -0.0902 -3.5200 43 1 12.8462 -0.1094 -4.1274 44 1 10.2625 0.5462 0.2586 45 1 10.2620 -1.2156 0.5180 46 1 8.0290 -0.1366 0.9904 47 1 7.9545 -1.3792 -0.2845 48 1 4.2925 -2.8797 1.0257 49 1 3.6125 -3.2494 -0.5771 50 1 5.1722 -2.4018 -0.4460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021689968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:02 Heat of formation + Delta-G solvation = 45.764837 kcal Electronic energy + Delta-G solvation = -31752.160709 eV Core-core repulsion = 27780.328582 eV Total energy + Delta-G solvation = -3971.832127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.69737 -40.24197 -37.79242 -35.96567 -34.75896 -33.93425 -32.89690 -32.48826 -30.32233 -29.63780 -29.34376 -28.42817 -25.67468 -25.11426 -23.90796 -22.94313 -22.57452 -22.14436 -20.50103 -19.51098 -19.29703 -18.18057 -16.94387 -16.70278 -16.31234 -16.06707 -15.53343 -15.00642 -14.79344 -14.45238 -14.33726 -14.03350 -13.80852 -13.61964 -13.46447 -13.33671 -13.17798 -12.83000 -12.72005 -12.67221 -12.52390 -12.37031 -12.27061 -12.16535 -11.80671 -11.42915 -11.10607 -11.00816 -10.86630 -10.85328 -10.71878 -10.66544 -10.30536 -10.10555 -10.04850 -9.83625 -9.59664 -9.56306 -9.47224 -8.91476 -8.46041 -8.35777 -6.56341 -5.78456 -3.26084 0.32942 0.73883 2.56857 2.94081 3.38373 3.39211 3.43392 3.45128 3.56140 3.73123 4.09792 4.28041 4.49498 4.69872 4.74069 4.83688 4.95260 5.06239 5.10092 5.18257 5.28315 5.29555 5.37558 5.41685 5.43774 5.47243 5.51706 5.60337 5.62327 5.68828 5.83203 5.84806 5.91069 6.07040 6.10671 6.20442 6.25726 6.35994 6.40315 6.52486 6.60710 6.63250 6.77680 6.92690 6.99230 7.14095 7.30140 7.47832 7.61260 7.75064 7.81489 8.17823 8.49870 9.23300 9.84814 10.43881 11.29821 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002966 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.259208 B = 9438.896732 C = 9889.226183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.329 3.671 3 N -0.525 5.525 4 C 0.183 3.817 5 C -0.239 4.239 6 C 0.568 3.432 7 O -0.513 6.513 8 N -0.596 5.596 9 C 0.102 3.898 10 C -0.133 4.133 11 C -0.112 4.112 12 C -0.121 4.121 13 H 0.066 0.934 14 C 0.186 3.814 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.062 0.938 18 C 0.006 3.994 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.140 3.860 25 C -0.122 4.122 26 C 0.158 3.842 27 H 0.069 0.931 28 C 0.228 3.772 29 C -0.109 4.109 30 N -0.521 5.521 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.020 0.980 42 H 0.085 0.915 43 H 0.254 0.746 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.261 4.411 3.157 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 N -0.240 5.240 4 C 0.016 3.984 5 C -0.247 4.247 6 C 0.353 3.647 7 O -0.390 6.390 8 N -0.328 5.328 9 C -0.022 4.022 10 C -0.171 4.171 11 C -0.150 4.150 12 C -0.142 4.142 13 H 0.085 0.915 14 C 0.059 3.941 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.080 0.920 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.013 3.987 25 C -0.162 4.162 26 C 0.057 3.943 27 H 0.087 0.913 28 C 0.081 3.919 29 C -0.166 4.166 30 N -0.236 5.236 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.190 0.810 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.102 0.898 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.786 4.112 3.477 22.442 hybrid contribution 1.425 -0.489 -0.554 1.605 sum -20.361 3.624 2.923 20.886 Atomic orbital electron populations 1.20613 0.85400 1.04370 1.04076 1.23443 0.98376 0.83347 0.88518 1.68297 1.09521 1.30075 1.16111 1.23452 0.89464 0.97646 0.87813 1.21797 0.96920 0.96393 1.09555 1.17807 0.85302 0.79707 0.81864 1.90859 1.67474 1.43142 1.37482 1.48288 1.08181 1.45374 1.30994 1.21830 0.96300 0.94720 0.89307 1.21825 0.97854 1.02029 0.95376 1.21495 0.93195 0.99993 1.00341 1.22293 1.00988 0.98463 0.92429 0.91527 1.20705 0.85064 0.93424 0.94871 1.44048 1.50233 1.37031 1.00202 1.19123 1.10268 0.93538 1.15370 0.92010 1.25176 0.97010 0.96090 1.00999 1.69970 1.37804 1.19973 1.27102 0.86380 0.79682 0.82250 0.78480 1.21010 1.21636 1.20813 1.21126 0.91722 0.98254 0.87605 1.22559 0.96947 0.97972 0.98679 1.21409 0.75721 0.99836 0.97352 0.91311 1.21845 0.88840 0.95357 0.85816 1.20874 0.99932 0.91237 1.04532 1.68191 1.09100 1.30141 1.16186 0.89365 0.89392 0.89425 0.81005 0.90686 0.90895 0.91006 0.91855 0.91926 0.91432 0.96172 0.89687 0.93594 0.96763 0.92586 0.89850 0.91890 0.88691 0.89781 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.33 3.61 7.64 -157.07 -1.20 2.41 16 3 N -0.53 -5.93 10.32 -10.39 -0.11 -6.03 16 4 C 0.18 2.01 8.74 -16.77 -0.15 1.86 16 5 C -0.24 -3.03 4.93 -104.69 -0.52 -3.55 16 6 C 0.57 8.31 6.15 -12.33 -0.08 8.23 16 7 O -0.51 -8.89 11.68 5.33 0.06 -8.83 16 8 N -0.60 -8.34 2.98 -166.70 -0.50 -8.84 16 9 C 0.10 1.10 5.52 -3.90 -0.02 1.08 16 10 C -0.13 -1.52 6.05 -26.83 -0.16 -1.68 16 11 C -0.11 -1.60 5.24 -26.75 -0.14 -1.74 16 12 C -0.12 -2.17 2.21 -90.54 -0.20 -2.37 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.19 4.24 4.57 -3.70 -0.02 4.23 16 15 N -0.59 -14.78 2.98 -172.25 -0.51 -15.30 16 16 C -0.25 -6.95 9.54 -15.06 -0.14 -7.09 16 17 H 0.06 1.69 7.86 -52.49 -0.41 1.28 16 18 C 0.01 0.17 4.99 -17.43 -0.09 0.08 16 19 N -0.90 -25.86 11.28 55.49 0.63 -25.24 16 20 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.14 3.03 6.50 -3.68 -0.02 3.00 16 25 C -0.12 -2.31 3.81 -26.63 -0.10 -2.41 16 26 C 0.16 2.65 2.64 -67.73 -0.18 2.48 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 C 0.23 2.90 6.86 -81.82 -0.56 2.34 16 29 C -0.11 -1.26 9.52 36.01 0.34 -0.92 16 30 N -0.52 -6.38 10.25 -6.67 -0.07 -6.45 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.17 1.48 7.37 -52.49 -0.39 1.09 16 35 H 0.07 0.74 4.73 -51.93 -0.25 0.49 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 2.18 6.31 -51.93 -0.33 1.86 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 46 H 0.08 1.57 6.13 -51.93 -0.32 1.25 16 47 H 0.06 1.29 7.44 -51.93 -0.39 0.91 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.09 1.13 6.72 -51.93 -0.35 0.78 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -31.34 382.39 -10.51 -41.85 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.89 Total: 0.74 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.86 Total: 5.72 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.56 Total: -61.86 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.34 -10.51 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021689968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.616 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds