Wall clock time and date at job start Wed Apr 1 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31887 * 118.95139 * 2 1 4 4 C 1.32138 * 120.96287 * 179.72526 * 3 2 1 5 5 C 1.39967 * 118.92187 * 0.52208 * 4 3 2 6 6 C 1.47837 * 120.93703 * 179.74248 * 5 4 3 7 7 O 1.21545 * 120.00253 * 126.59146 * 6 5 4 8 8 N 1.34775 * 119.99713 * 306.86422 * 6 5 4 9 9 C 1.47072 * 120.84440 * 3.86752 * 8 6 5 10 10 C 1.52671 * 109.29918 * 233.36627 * 9 8 6 11 11 C 1.53141 * 109.69260 * 306.24885 * 10 9 8 12 12 C 1.52825 * 109.26070 * 60.71205 * 11 10 9 13 13 H 1.09006 * 109.47096 * 57.99416 * 12 11 10 14 14 C 1.53067 * 110.34093 * 178.52813 * 12 11 10 15 15 N 1.47066 * 108.33154 * 175.44366 * 14 12 11 16 16 C 1.36941 * 120.47234 * 126.70106 * 15 14 12 17 17 H 1.07991 * 120.00664 * 212.98736 * 16 15 14 18 18 C 1.38816 * 119.99579 * 32.98223 * 16 15 14 19 19 N 1.31616 * 120.00159 * 12.40644 * 18 16 15 20 20 Si 1.86796 * 120.00056 * 192.39964 * 18 16 15 21 21 H 1.48508 * 109.46977 * 60.00351 * 20 18 16 22 22 H 1.48499 * 109.47437 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47308 * 300.00666 * 20 18 16 24 24 C 1.46870 * 119.05972 * 306.68017 * 15 14 12 25 25 C 1.53310 * 109.09756 * 52.65633 * 24 15 14 26 26 C 1.46716 * 120.84436 * 184.14575 * 8 6 5 27 27 H 1.09000 * 109.52938 * 245.42623 * 26 8 6 28 28 C 1.39927 * 118.12190 * 359.46652 * 5 4 3 29 29 C 1.50701 * 120.53851 * 180.25278 * 28 5 4 30 30 N 1.31850 * 118.95086 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47405 * 270.02944 * 1 2 3 32 32 H 1.09005 * 109.46718 * 30.02429 * 1 2 3 33 33 H 1.08999 * 109.47169 * 150.02582 * 1 2 3 34 34 H 1.08000 * 120.53326 * 180.26063 * 4 3 2 35 35 H 1.08999 * 109.54192 * 353.29008 * 9 8 6 36 36 H 1.08998 * 109.54317 * 113.55408 * 9 8 6 37 37 H 1.08996 * 109.51552 * 186.11116 * 10 9 8 38 38 H 1.08998 * 109.29269 * 66.25169 * 10 9 8 39 39 H 1.08995 * 109.51246 * 300.77618 * 11 10 9 40 40 H 1.09001 * 109.50525 * 180.64293 * 11 10 9 41 41 H 1.09007 * 109.68636 * 55.73926 * 14 12 11 42 42 H 1.08999 * 109.72580 * 295.17673 * 14 12 11 43 43 H 0.96998 * 120.00533 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.52922 * 292.76969 * 24 15 14 45 45 H 1.09001 * 109.59130 * 172.57897 * 24 15 14 46 46 H 1.09004 * 109.55309 * 186.05468 * 25 24 15 47 47 H 1.08997 * 109.56242 * 65.73824 * 25 24 15 48 48 H 1.09004 * 109.47186 * 94.24656 * 29 28 5 49 49 H 1.08992 * 109.47428 * 214.24777 * 29 28 5 50 50 H 1.09006 * 109.47050 * 334.25277 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4660 1.2004 0.0054 5 6 4.1855 -0.0001 0.0001 6 6 5.6639 -0.0002 0.0001 7 8 6.2716 -0.6314 0.8424 8 7 6.3377 0.7042 -0.9306 9 6 5.6237 1.5464 -1.9021 10 6 6.0611 1.1683 -3.3151 11 6 7.5876 1.2362 -3.4183 12 6 8.2041 0.2482 -2.4287 13 1 7.8387 -0.7562 -2.6426 14 6 9.7308 0.2694 -2.5370 15 7 10.2807 -0.6111 -1.4952 16 6 11.1617 -1.6073 -1.8218 17 1 11.1637 -2.5312 -1.2627 18 6 12.0521 -1.4296 -2.8719 19 7 12.2238 -0.2337 -3.3940 20 14 13.0068 -2.8878 -3.5438 21 1 12.0566 -3.9115 -4.0485 22 1 13.8832 -2.4365 -4.6544 23 1 13.8390 -3.4751 -2.4631 24 6 9.8720 -0.4064 -0.0995 25 6 8.3409 -0.3945 -0.0217 26 6 7.8019 0.6456 -1.0041 27 1 8.2182 1.6239 -0.7639 28 6 3.4660 -1.2002 0.0006 29 6 4.1855 -2.5244 0.0008 30 7 2.1452 -1.1537 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 3.9817 2.1494 0.0096 35 1 4.5498 1.3899 -1.8004 36 1 5.8598 2.5946 -1.7190 37 1 5.6179 1.8605 -4.0310 38 1 5.7271 0.1547 -3.5365 39 1 7.9239 2.2456 -3.1820 40 1 7.8958 0.9769 -4.4312 41 1 10.0954 1.2859 -2.3888 42 1 10.0349 -0.0902 -3.5200 43 1 12.8462 -0.1094 -4.1274 44 1 10.2625 0.5462 0.2586 45 1 10.2620 -1.2156 0.5180 46 1 8.0290 -0.1366 0.9904 47 1 7.9545 -1.3792 -0.2845 48 1 4.2925 -2.8797 1.0257 49 1 3.6125 -3.2494 -0.5771 50 1 5.1722 -2.4018 -0.4460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021689968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:01 Heat of formation + Delta-G solvation = 27.439768 kcal Electronic energy + Delta-G solvation = -31752.955344 eV Core-core repulsion = 27780.328582 eV Total energy + Delta-G solvation = -3972.626762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.65097 -41.41122 -39.15863 -37.44814 -35.64620 -35.07103 -34.29226 -33.95648 -31.95915 -30.97542 -30.25527 -29.50526 -27.27104 -26.47755 -24.84066 -24.38418 -23.92283 -23.33497 -21.74136 -21.17760 -20.48379 -19.08577 -18.70292 -18.02052 -17.27041 -17.11150 -16.79101 -16.52429 -16.15156 -15.64960 -15.56131 -15.49088 -15.20007 -14.88792 -14.65652 -14.41387 -14.21001 -14.08512 -13.92874 -13.77263 -13.59694 -13.40033 -13.28841 -13.19609 -13.15601 -12.89331 -12.75742 -12.58765 -12.42848 -12.24602 -12.11273 -12.08486 -11.77247 -11.66304 -11.60878 -11.48647 -11.06895 -10.60360 -10.52769 -10.44761 -10.17302 -9.60658 -8.58911 -7.88401 -5.40077 -0.56092 -0.14262 1.44617 1.45033 1.46673 1.53436 1.83627 2.48881 2.50931 2.78027 2.91994 3.22776 3.25395 3.29019 3.61768 3.78605 3.79570 3.89350 3.93101 4.03560 4.11340 4.26095 4.29099 4.31536 4.43994 4.50819 4.55922 4.58949 4.63487 4.71830 4.73786 4.78607 4.84217 4.85572 4.89217 4.91478 5.03109 5.03473 5.06540 5.17268 5.26622 5.33435 5.38000 5.42559 5.49955 5.58429 5.65499 5.75145 5.75557 6.33039 6.41393 6.89515 7.02820 7.15299 7.83580 8.37252 9.16590 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002966 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.259208 B = 9438.896732 C = 9889.226183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.325 3.675 3 N -0.529 5.529 4 C 0.193 3.807 5 C -0.252 4.252 6 C 0.570 3.430 7 O -0.548 6.548 8 N -0.594 5.594 9 C 0.099 3.901 10 C -0.124 4.124 11 C -0.108 4.108 12 C -0.107 4.107 13 H 0.043 0.957 14 C 0.195 3.805 15 N -0.612 5.612 16 C -0.270 4.270 17 H 0.056 0.944 18 C -0.042 4.042 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.138 3.862 25 C -0.102 4.102 26 C 0.167 3.833 27 H 0.075 0.925 28 C 0.218 3.782 29 C -0.104 4.104 30 N -0.533 5.533 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.004 0.996 42 H 0.051 0.949 43 H 0.252 0.748 44 H 0.015 0.985 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.022 5.660 2.873 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 N -0.244 5.244 4 C 0.026 3.974 5 C -0.260 4.260 6 C 0.357 3.643 7 O -0.426 6.426 8 N -0.325 5.325 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.128 4.128 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.335 5.335 16 C -0.400 4.400 17 H 0.073 0.927 18 C -0.238 4.238 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.203 1.203 24 C 0.012 3.988 25 C -0.141 4.141 26 C 0.064 3.936 27 H 0.093 0.907 28 C 0.072 3.928 29 C -0.161 4.161 30 N -0.249 5.249 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.216 0.784 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.022 0.978 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.060 0.940 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.595 5.374 3.192 25.377 hybrid contribution 2.236 -0.877 -0.421 2.438 sum -22.360 4.497 2.771 22.975 Atomic orbital electron populations 1.20778 0.82722 1.05530 1.05259 1.24236 1.00015 0.82931 0.86866 1.68440 1.09439 1.30042 1.16491 1.23845 0.89464 0.97887 0.86155 1.21568 0.95351 0.97308 1.11784 1.18055 0.86174 0.78830 0.81265 1.90827 1.68441 1.44452 1.38923 1.48226 1.06849 1.45788 1.31658 1.22117 0.96854 0.95447 0.87852 1.21786 0.95216 1.02511 0.96737 1.21461 0.95421 0.99118 0.98620 1.22004 0.97418 0.98615 0.94728 0.93831 1.20503 0.88235 0.91693 0.92636 1.44320 1.50438 1.36941 1.01835 1.19376 1.10891 0.94110 1.15646 0.92653 1.25878 0.98044 0.98542 1.01310 1.70114 1.38389 1.21628 1.27387 0.85388 0.78318 0.79256 0.77728 1.20532 1.21496 1.20251 1.21216 0.93814 0.97799 0.86001 1.22294 0.94492 0.97700 0.99653 1.21071 0.77880 0.99084 0.95531 0.90705 1.21970 0.89377 0.95593 0.85836 1.20810 0.99048 0.91654 1.04621 1.68272 1.08661 1.30918 1.17025 0.87962 0.87929 0.88552 0.78421 0.88957 0.88125 0.87555 0.92927 0.90785 0.92053 0.97756 0.93071 0.93901 0.96697 0.93497 0.89359 0.93986 0.88626 0.88410 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.31 71.24 0.73 -0.19 16 2 C 0.32 6.26 7.64 138.71 1.06 7.32 16 3 N -0.53 -10.28 10.32 -186.79 -1.93 -12.21 16 4 C 0.19 3.65 8.74 85.07 0.74 4.40 16 5 C -0.25 -5.98 4.93 -19.91 -0.10 -6.08 16 6 C 0.57 16.16 6.15 86.78 0.53 16.69 16 7 O -0.55 -19.12 11.68 -3.86 -0.05 -19.16 16 8 N -0.59 -15.69 2.98 -799.61 -2.38 -18.07 16 9 C 0.10 1.81 5.52 86.16 0.48 2.28 16 10 C -0.12 -2.48 6.05 30.53 0.18 -2.29 16 11 C -0.11 -2.95 5.24 30.58 0.16 -2.79 16 12 C -0.11 -3.88 2.21 -10.74 -0.02 -3.91 16 13 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 14 C 0.20 9.27 4.57 86.29 0.39 9.66 16 15 N -0.61 -31.80 2.98 -698.88 -2.08 -33.88 16 16 C -0.27 -15.37 9.54 84.03 0.80 -14.57 16 17 H 0.06 3.15 7.86 -2.92 -0.02 3.12 16 18 C -0.04 -2.35 4.99 84.86 0.42 -1.93 16 19 N -0.93 -54.76 11.28 21.65 0.24 -54.52 16 20 Si 0.97 45.45 29.57 68.60 2.03 47.48 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 C 0.14 6.20 6.50 86.41 0.56 6.76 16 25 C -0.10 -3.96 3.81 30.66 0.12 -3.84 16 26 C 0.17 5.55 2.64 45.00 0.12 5.67 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 C 0.22 5.31 6.86 42.92 0.29 5.61 16 29 C -0.10 -2.42 9.52 71.24 0.68 -1.74 16 30 N -0.53 -12.09 10.25 -175.03 -1.79 -13.89 16 31 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.20 2.58 7.37 -2.91 -0.02 2.56 16 35 H 0.09 1.44 4.73 -2.39 -0.01 1.43 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 42 H 0.05 2.75 6.31 -2.39 -0.02 2.74 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 46 H 0.09 3.37 6.13 -2.38 -0.01 3.35 16 47 H 0.04 1.79 7.44 -2.39 -0.02 1.77 16 48 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.07 1.80 6.72 -2.38 -0.02 1.79 16 Total: -1.00 -70.57 382.39 2.14 -68.42 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.94 Total: 14.78 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 7.16 Total: 21.05 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -7.94 Total: -132.56 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.57 2.14 -68.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021689968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.863 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds