Wall clock time and date at job start Wed Apr 1 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38803 * 120.42538 * 2 1 4 4 C 1.39492 * 118.26201 * 179.97438 * 3 2 1 5 5 C 1.48451 * 120.55233 * 179.97438 * 4 3 2 6 6 O 1.21479 * 119.99803 * 8.33330 * 5 4 3 7 7 N 1.34775 * 120.00358 * 188.33034 * 5 4 3 8 8 C 1.47271 * 120.93156 * 7.79147 * 7 5 4 9 9 C 1.53131 * 109.20247 * 126.72692 * 8 7 5 10 10 C 1.53150 * 109.61821 * 53.92007 * 9 8 7 11 11 C 1.52815 * 109.26123 * 299.15443 * 10 9 8 12 12 H 1.09006 * 109.47589 * 301.99590 * 11 10 9 13 13 C 1.53062 * 110.33765 * 181.45941 * 11 10 9 14 14 N 1.47073 * 108.37269 * 184.58071 * 13 11 10 15 15 C 1.36936 * 120.47073 * 233.27530 * 14 13 11 16 16 H 1.07996 * 119.99950 * 149.67452 * 15 14 13 17 17 C 1.38812 * 119.99890 * 329.66975 * 15 14 13 18 18 N 1.31619 * 119.99680 * 165.70205 * 17 15 14 19 19 Si 1.86805 * 119.99945 * 345.69434 * 17 15 14 20 20 H 1.48495 * 109.46832 * 90.31373 * 19 17 15 21 21 H 1.48505 * 109.46905 * 210.31077 * 19 17 15 22 22 H 1.48497 * 109.47160 * 330.31013 * 19 17 15 23 23 C 1.46864 * 119.05742 * 53.29190 * 14 13 11 24 24 C 1.53314 * 109.10244 * 307.35220 * 23 14 13 25 25 C 1.46715 * 120.84576 * 187.61022 * 7 5 4 26 26 H 1.08997 * 109.52801 * 114.55247 * 25 7 5 27 27 N 1.33112 * 118.89948 * 0.24767 * 4 3 2 28 28 C 1.31551 * 120.73528 * 359.48797 * 27 4 3 29 29 C 1.50707 * 119.03706 * 180.24111 * 28 27 4 30 30 N 1.31910 * 121.91958 * 0.53065 * 28 27 4 31 31 H 1.09003 * 109.47083 * 90.00246 * 1 2 3 32 32 H 1.09006 * 109.47465 * 210.00072 * 1 2 3 33 33 H 1.08994 * 109.47603 * 330.00547 * 1 2 3 34 34 H 1.07995 * 120.86986 * 359.97438 * 3 2 1 35 35 H 1.08993 * 109.53077 * 6.77064 * 8 7 5 36 36 H 1.09006 * 109.40444 * 246.60229 * 8 7 5 37 37 H 1.08997 * 109.44370 * 293.87538 * 9 8 7 38 38 H 1.08995 * 109.44502 * 173.96557 * 9 8 7 39 39 H 1.08996 * 109.50612 * 179.21520 * 10 9 8 40 40 H 1.09000 * 109.50429 * 59.08497 * 10 9 8 41 41 H 1.08998 * 109.69358 * 64.85070 * 13 11 10 42 42 H 1.09003 * 109.69228 * 304.31160 * 13 11 10 43 43 H 0.97010 * 119.99574 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.53134 * 67.23819 * 23 14 13 45 45 H 1.08995 * 109.53043 * 187.38907 * 23 14 13 46 46 H 1.09000 * 109.55833 * 173.94487 * 24 23 14 47 47 H 1.08997 * 109.55728 * 294.26826 * 24 23 14 48 48 H 1.08993 * 109.47265 * 270.27709 * 29 28 27 49 49 H 1.08997 * 109.46784 * 30.28123 * 29 28 27 50 50 H 1.09002 * 109.46334 * 150.27698 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6038 1.1442 0.0005 5 6 4.4062 2.3932 0.0000 6 8 3.8586 3.4670 0.1516 7 7 5.7421 2.3360 -0.1686 8 6 6.4069 1.0705 -0.5226 9 6 7.2682 1.2858 -1.7702 10 6 8.2239 2.4600 -1.5389 11 6 7.4113 3.7272 -1.2764 12 1 6.7510 3.9173 -2.1226 13 6 8.3432 4.9251 -1.0774 14 7 7.5255 6.0941 -0.7198 15 6 7.6359 7.2613 -1.4273 16 1 6.7818 7.9146 -1.5279 17 6 8.8455 7.6049 -2.0152 18 7 8.8903 8.5618 -2.9178 19 14 10.4099 6.7092 -1.5251 20 1 10.6050 5.5333 -2.4107 21 1 11.5690 7.6278 -1.6593 22 1 10.2992 6.2546 -0.1157 23 6 6.5893 5.9920 0.4071 24 6 5.6913 4.7661 0.2038 25 6 6.5726 3.5348 -0.0079 26 1 7.2336 3.4079 0.8495 27 7 4.2027 -0.0446 -0.0040 28 6 3.4954 -1.1537 0.0012 29 6 4.2130 -2.4790 0.0013 30 7 2.1763 -1.1398 0.0006 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6912 2.1441 -0.0004 35 1 5.6548 0.3083 -0.7259 36 1 7.0388 0.7493 0.3056 37 1 6.6245 1.5043 -2.6222 38 1 7.8447 0.3834 -1.9734 39 1 8.8456 2.6028 -2.4227 40 1 8.8577 2.2491 -0.6775 41 1 8.8862 5.1254 -2.0010 42 1 9.0495 4.7116 -0.2751 43 1 9.7357 8.8021 -3.3283 44 1 7.1483 5.8841 1.3367 45 1 5.9752 6.8913 0.4533 46 1 5.0671 4.6207 1.0855 47 1 5.0597 4.9176 -0.6715 48 1 4.3864 -2.7984 -1.0263 49 1 5.1683 -2.3747 0.5156 50 1 3.6031 -3.2222 0.5149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021690898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:10 Heat of formation + Delta-G solvation = 65.537098 kcal Electronic energy + Delta-G solvation = -31593.761538 eV Core-core repulsion = 27622.786800 eV Total energy + Delta-G solvation = -3970.974738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76707 -40.30905 -37.95700 -36.15480 -35.00536 -33.86602 -33.00484 -32.41741 -30.53249 -29.80748 -29.61259 -28.55635 -26.01183 -25.54870 -23.89247 -22.95285 -22.68706 -22.13906 -20.61541 -19.72746 -19.48345 -18.09626 -16.88105 -16.64315 -16.13818 -15.92798 -15.86512 -15.21165 -14.96896 -14.91010 -14.40060 -14.26155 -13.93843 -13.81920 -13.71257 -13.43952 -13.22904 -12.91829 -12.86310 -12.75257 -12.66602 -12.61170 -12.41279 -12.11843 -11.94325 -11.54290 -11.41083 -11.17139 -11.02746 -10.96344 -10.74805 -10.60362 -10.30777 -10.02350 -9.95074 -9.76973 -9.73025 -9.46920 -9.43337 -9.00521 -8.60153 -8.31527 -6.85828 -5.89480 -3.30200 0.23647 0.51741 2.61057 2.80476 3.31533 3.41075 3.47812 3.48383 3.51062 3.56947 4.05423 4.50740 4.54383 4.54646 4.83775 4.91426 4.99189 5.03628 5.07277 5.08653 5.14447 5.17077 5.19522 5.23867 5.38216 5.39304 5.44898 5.53241 5.57398 5.58988 5.70397 5.85133 5.90765 6.00436 6.06130 6.13089 6.16947 6.23743 6.29142 6.32881 6.44991 6.50243 6.53679 6.65407 6.77983 6.82920 6.87642 7.13555 7.44319 7.62538 8.04262 8.10752 8.39381 8.99189 9.76030 10.14516 11.26918 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.003071 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.677680 B = 9116.257239 C =10057.006517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.182 3.818 3 C -0.178 4.178 4 C 0.145 3.855 5 C 0.563 3.437 6 O -0.512 6.512 7 N -0.580 5.580 8 C 0.073 3.927 9 C -0.132 4.132 10 C -0.119 4.119 11 C -0.112 4.112 12 H 0.076 0.924 13 C 0.132 3.868 14 N -0.608 5.608 15 C -0.256 4.256 16 H 0.085 0.915 17 C 0.020 3.980 18 N -0.915 5.915 19 Si 0.890 3.110 20 H -0.288 1.288 21 H -0.305 1.305 22 H -0.269 1.269 23 C 0.143 3.857 24 C -0.120 4.120 25 C 0.154 3.846 26 H 0.070 0.930 27 N -0.493 5.493 28 C 0.314 3.686 29 C -0.086 4.086 30 N -0.511 5.511 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.019 0.981 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 -24.180 6.417 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.034 3.966 3 C -0.201 4.201 4 C -0.002 4.002 5 C 0.347 3.653 6 O -0.387 6.387 7 N -0.311 5.311 8 C -0.049 4.049 9 C -0.171 4.171 10 C -0.157 4.157 11 C -0.134 4.134 12 H 0.095 0.905 13 C 0.006 3.994 14 N -0.331 5.331 15 C -0.384 4.384 16 H 0.103 0.897 17 C -0.178 4.178 18 N -0.559 5.559 19 Si 0.722 3.278 20 H -0.216 1.216 21 H -0.234 1.234 22 H -0.194 1.194 23 C 0.017 3.983 24 C -0.159 4.159 25 C 0.052 3.948 26 H 0.088 0.912 27 N -0.211 5.211 28 C 0.048 3.952 29 C -0.145 4.145 30 N -0.227 5.227 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.616 -24.287 6.411 27.674 hybrid contribution 0.768 0.344 0.037 0.843 sum -10.847 -23.943 6.448 27.065 Atomic orbital electron populations 1.20824 0.87124 1.04425 1.04053 1.21853 0.97895 0.87610 0.89228 1.22787 0.94578 1.01416 1.01344 1.21994 0.92313 0.92569 0.93308 1.17850 0.82211 0.86605 0.78599 1.90883 1.71025 1.27264 1.49539 1.48166 1.05308 1.11419 1.66171 1.22974 0.98736 0.86599 0.96621 1.21930 0.98256 0.98746 0.98136 1.21576 0.97772 0.94485 1.01845 1.22074 0.98186 0.95437 0.97658 0.90536 1.21428 0.92731 0.86148 0.99088 1.44399 1.46042 1.09150 1.33534 1.18969 0.96125 0.97064 1.26278 0.89706 1.25360 0.97480 0.96624 0.98320 1.69785 1.26024 1.32337 1.27719 0.86881 0.83796 0.77830 0.79337 1.21638 1.23356 1.19445 1.21138 0.91338 0.96484 0.89346 1.22499 0.96846 0.93151 1.03398 1.21387 0.91888 0.83880 0.97604 0.91249 1.68281 1.39309 0.98393 1.15120 1.23443 0.86678 0.94923 0.90203 1.20617 1.00113 0.89553 1.04171 1.68055 1.09734 1.30514 1.14397 0.89304 0.89665 0.89649 0.82162 0.84183 0.91871 0.92009 0.91028 0.91644 0.92020 0.90693 0.95461 0.92824 0.96299 0.91559 0.90732 0.90598 0.89345 0.89297 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.22 36.01 0.37 -0.25 16 2 C 0.18 1.71 6.83 -82.24 -0.56 1.15 16 3 C -0.18 -1.95 9.40 -38.91 -0.37 -2.31 16 4 C 0.14 1.85 6.63 -82.64 -0.55 1.30 16 5 C 0.56 8.64 7.61 -12.05 -0.09 8.55 16 6 O -0.51 -9.01 12.02 5.38 0.06 -8.95 16 7 N -0.58 -8.70 2.99 -166.03 -0.50 -9.20 16 8 C 0.07 0.89 5.93 -3.55 -0.02 0.87 16 9 C -0.13 -1.61 6.07 -26.59 -0.16 -1.77 16 10 C -0.12 -1.74 5.24 -26.75 -0.14 -1.88 16 11 C -0.11 -2.05 2.21 -90.54 -0.20 -2.25 16 12 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 13 C 0.13 2.92 3.48 -3.70 -0.01 2.91 16 14 N -0.61 -14.94 2.77 -172.25 -0.48 -15.41 16 15 C -0.26 -7.36 10.05 -15.06 -0.15 -7.51 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 17 C 0.02 0.60 5.32 -17.43 -0.09 0.51 16 18 N -0.92 -28.65 13.97 55.49 0.78 -27.87 16 19 Si 0.89 22.80 24.24 -169.99 -4.12 18.68 16 20 H -0.29 -7.06 6.58 56.52 0.37 -6.68 16 21 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 22 H -0.27 -6.73 6.36 56.52 0.36 -6.37 16 23 C 0.14 3.02 6.50 -3.68 -0.02 3.00 16 24 C -0.12 -2.27 3.79 -26.62 -0.10 -2.37 16 25 C 0.15 2.64 2.63 -67.72 -0.18 2.46 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 N -0.49 -5.60 6.20 -7.32 -0.05 -5.65 16 28 C 0.31 3.12 7.64 -157.30 -1.20 1.92 16 29 C -0.09 -0.53 10.32 36.01 0.37 -0.16 16 30 N -0.51 -5.22 10.25 -7.00 -0.07 -5.29 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 34 H 0.16 1.61 7.76 -52.49 -0.41 1.20 16 35 H 0.14 1.61 4.05 -80.24 -0.32 1.29 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.81 4.42 -51.93 -0.23 1.58 16 42 H 0.03 0.60 6.81 -51.93 -0.35 0.24 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 45 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 46 H 0.07 1.37 6.51 -51.93 -0.34 1.03 16 47 H 0.08 1.60 7.10 -51.93 -0.37 1.24 16 48 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -33.60 377.23 -9.78 -43.38 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.98 Total: 0.46 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -3.11 Total: 4.17 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.31 Total: -63.43 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.06 Total: -8.95 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.12 Total: 18.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.60 -9.78 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021690898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.914 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds