Wall clock time and date at job start Wed Apr 1 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38803 * 120.42538 * 2 1 4 4 C 1.39492 * 118.26201 * 179.97438 * 3 2 1 5 5 C 1.48451 * 120.55233 * 179.97438 * 4 3 2 6 6 O 1.21479 * 119.99803 * 8.33330 * 5 4 3 7 7 N 1.34775 * 120.00358 * 188.33034 * 5 4 3 8 8 C 1.47271 * 120.93156 * 7.79147 * 7 5 4 9 9 C 1.53131 * 109.20247 * 126.72692 * 8 7 5 10 10 C 1.53150 * 109.61821 * 53.92007 * 9 8 7 11 11 C 1.52815 * 109.26123 * 299.15443 * 10 9 8 12 12 H 1.09006 * 109.47589 * 301.99590 * 11 10 9 13 13 C 1.53062 * 110.33765 * 181.45941 * 11 10 9 14 14 N 1.47073 * 108.37269 * 184.58071 * 13 11 10 15 15 C 1.36936 * 120.47073 * 233.27530 * 14 13 11 16 16 H 1.07996 * 119.99950 * 149.67452 * 15 14 13 17 17 C 1.38812 * 119.99890 * 329.66975 * 15 14 13 18 18 N 1.31619 * 119.99680 * 165.70205 * 17 15 14 19 19 Si 1.86805 * 119.99945 * 345.69434 * 17 15 14 20 20 H 1.48495 * 109.46832 * 90.31373 * 19 17 15 21 21 H 1.48505 * 109.46905 * 210.31077 * 19 17 15 22 22 H 1.48497 * 109.47160 * 330.31013 * 19 17 15 23 23 C 1.46864 * 119.05742 * 53.29190 * 14 13 11 24 24 C 1.53314 * 109.10244 * 307.35220 * 23 14 13 25 25 C 1.46715 * 120.84576 * 187.61022 * 7 5 4 26 26 H 1.08997 * 109.52801 * 114.55247 * 25 7 5 27 27 N 1.33112 * 118.89948 * 0.24767 * 4 3 2 28 28 C 1.31551 * 120.73528 * 359.48797 * 27 4 3 29 29 C 1.50707 * 119.03706 * 180.24111 * 28 27 4 30 30 N 1.31910 * 121.91958 * 0.53065 * 28 27 4 31 31 H 1.09003 * 109.47083 * 90.00246 * 1 2 3 32 32 H 1.09006 * 109.47465 * 210.00072 * 1 2 3 33 33 H 1.08994 * 109.47603 * 330.00547 * 1 2 3 34 34 H 1.07995 * 120.86986 * 359.97438 * 3 2 1 35 35 H 1.08993 * 109.53077 * 6.77064 * 8 7 5 36 36 H 1.09006 * 109.40444 * 246.60229 * 8 7 5 37 37 H 1.08997 * 109.44370 * 293.87538 * 9 8 7 38 38 H 1.08995 * 109.44502 * 173.96557 * 9 8 7 39 39 H 1.08996 * 109.50612 * 179.21520 * 10 9 8 40 40 H 1.09000 * 109.50429 * 59.08497 * 10 9 8 41 41 H 1.08998 * 109.69358 * 64.85070 * 13 11 10 42 42 H 1.09003 * 109.69228 * 304.31160 * 13 11 10 43 43 H 0.97010 * 119.99574 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.53134 * 67.23819 * 23 14 13 45 45 H 1.08995 * 109.53043 * 187.38907 * 23 14 13 46 46 H 1.09000 * 109.55833 * 173.94487 * 24 23 14 47 47 H 1.08997 * 109.55728 * 294.26826 * 24 23 14 48 48 H 1.08993 * 109.47265 * 270.27709 * 29 28 27 49 49 H 1.08997 * 109.46784 * 30.28123 * 29 28 27 50 50 H 1.09002 * 109.46334 * 150.27698 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6038 1.1442 0.0005 5 6 4.4062 2.3932 0.0000 6 8 3.8586 3.4670 0.1516 7 7 5.7421 2.3360 -0.1686 8 6 6.4069 1.0705 -0.5226 9 6 7.2682 1.2858 -1.7702 10 6 8.2239 2.4600 -1.5389 11 6 7.4113 3.7272 -1.2764 12 1 6.7510 3.9173 -2.1226 13 6 8.3432 4.9251 -1.0774 14 7 7.5255 6.0941 -0.7198 15 6 7.6359 7.2613 -1.4273 16 1 6.7818 7.9146 -1.5279 17 6 8.8455 7.6049 -2.0152 18 7 8.8903 8.5618 -2.9178 19 14 10.4099 6.7092 -1.5251 20 1 10.6050 5.5333 -2.4107 21 1 11.5690 7.6278 -1.6593 22 1 10.2992 6.2546 -0.1157 23 6 6.5893 5.9920 0.4071 24 6 5.6913 4.7661 0.2038 25 6 6.5726 3.5348 -0.0079 26 1 7.2336 3.4079 0.8495 27 7 4.2027 -0.0446 -0.0040 28 6 3.4954 -1.1537 0.0012 29 6 4.2130 -2.4790 0.0013 30 7 2.1763 -1.1398 0.0006 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6912 2.1441 -0.0004 35 1 5.6548 0.3083 -0.7259 36 1 7.0388 0.7493 0.3056 37 1 6.6245 1.5043 -2.6222 38 1 7.8447 0.3834 -1.9734 39 1 8.8456 2.6028 -2.4227 40 1 8.8577 2.2491 -0.6775 41 1 8.8862 5.1254 -2.0010 42 1 9.0495 4.7116 -0.2751 43 1 9.7357 8.8021 -3.3283 44 1 7.1483 5.8841 1.3367 45 1 5.9752 6.8913 0.4533 46 1 5.0671 4.6207 1.0855 47 1 5.0597 4.9176 -0.6715 48 1 4.3864 -2.7984 -1.0263 49 1 5.1683 -2.3747 0.5156 50 1 3.6031 -3.2222 0.5149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021690898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:08 Heat of formation + Delta-G solvation = 44.377129 kcal Electronic energy + Delta-G solvation = -31594.679103 eV Core-core repulsion = 27622.786800 eV Total energy + Delta-G solvation = -3971.892303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.65394 -41.48874 -39.36018 -37.58943 -35.87207 -34.81160 -34.34166 -34.14080 -32.30222 -31.26178 -30.17861 -29.23987 -27.46094 -26.94150 -25.27868 -24.38663 -23.80435 -23.22613 -21.83001 -21.38716 -20.59937 -19.02765 -18.86189 -17.74860 -17.42484 -17.04853 -16.86098 -16.60383 -16.29302 -15.97852 -15.68446 -15.53211 -15.41843 -14.96625 -14.86751 -14.47632 -14.33968 -14.26561 -14.01184 -13.98093 -13.66914 -13.52096 -13.33987 -13.21245 -13.08794 -13.02398 -12.90247 -12.58403 -12.46432 -12.22041 -11.93562 -11.83055 -11.72770 -11.66850 -11.49609 -11.37714 -11.27707 -10.95844 -10.61262 -10.49809 -9.92597 -9.61095 -8.88113 -8.18035 -5.56783 -0.66035 -0.22500 1.27199 1.39285 1.49185 1.56528 1.69235 2.39380 2.57420 2.67579 2.87064 3.04403 3.19044 3.28638 3.62758 3.69897 3.75703 3.84031 3.89604 4.08465 4.18202 4.25625 4.28660 4.35062 4.39053 4.43042 4.54691 4.67464 4.69864 4.70646 4.72689 4.77079 4.77922 4.80773 4.82940 4.88915 4.94376 5.00943 5.05672 5.15960 5.16833 5.18256 5.26047 5.35912 5.42889 5.50699 5.68178 5.73186 5.85297 6.10130 6.29750 6.81096 6.88493 6.96625 7.57523 7.98137 9.02219 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.003071 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.677680 B = 9116.257239 C =10057.006517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.186 3.814 3 C -0.187 4.187 4 C 0.128 3.872 5 C 0.557 3.443 6 O -0.546 6.546 7 N -0.581 5.581 8 C 0.072 3.928 9 C -0.125 4.125 10 C -0.116 4.116 11 C -0.104 4.104 12 H 0.045 0.955 13 C 0.129 3.871 14 N -0.622 5.622 15 C -0.252 4.252 16 H 0.043 0.957 17 C -0.039 4.039 18 N -0.964 5.964 19 Si 0.959 3.041 20 H -0.268 1.268 21 H -0.311 1.311 22 H -0.254 1.254 23 C 0.141 3.859 24 C -0.101 4.101 25 C 0.159 3.841 26 H 0.085 0.915 27 N -0.497 5.497 28 C 0.309 3.691 29 C -0.084 4.084 30 N -0.518 5.518 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.039 0.961 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -28.701 7.720 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.038 3.962 3 C -0.210 4.210 4 C -0.017 4.017 5 C 0.343 3.657 6 O -0.424 6.424 7 N -0.311 5.311 8 C -0.049 4.049 9 C -0.163 4.163 10 C -0.154 4.154 11 C -0.125 4.125 12 H 0.064 0.936 13 C 0.004 3.996 14 N -0.347 5.347 15 C -0.382 4.382 16 H 0.060 0.940 17 C -0.233 4.233 18 N -0.610 5.610 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.240 1.240 22 H -0.178 1.178 23 C 0.015 3.985 24 C -0.141 4.141 25 C 0.056 3.944 26 H 0.103 0.897 27 N -0.216 5.216 28 C 0.043 3.957 29 C -0.142 4.142 30 N -0.234 5.234 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.063 0.937 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.084 -28.879 7.732 31.885 hybrid contribution 0.417 1.739 -0.380 1.828 sum -10.667 -27.140 7.353 30.074 Atomic orbital electron populations 1.20955 0.84522 1.05566 1.05174 1.22394 0.99501 0.86783 0.87528 1.22909 0.94066 1.02296 1.01693 1.21618 0.92636 0.92134 0.95357 1.18251 0.82361 0.87276 0.77779 1.90854 1.71657 1.28832 1.51033 1.48215 1.05266 1.11580 1.66072 1.23219 0.99141 0.85304 0.97202 1.21914 0.97789 0.99051 0.97559 1.21588 0.97922 0.93213 1.02668 1.21886 0.97560 0.95915 0.97131 0.93619 1.21492 0.93306 0.86460 0.98382 1.44507 1.47030 1.08813 1.34340 1.18843 0.94982 0.98150 1.26229 0.93957 1.26080 1.00954 0.98035 0.98248 1.69941 1.26829 1.34872 1.29379 0.85770 0.78581 0.77047 0.79916 1.19428 1.24010 1.17832 1.21257 0.91109 0.97099 0.89017 1.22235 0.96162 0.93375 1.02279 1.21179 0.91734 0.84045 0.97395 0.89742 1.68187 1.39441 0.98158 1.15793 1.24196 0.86920 0.95692 0.88923 1.20777 1.00382 0.87660 1.05394 1.68199 1.10008 1.30609 1.14633 0.87978 0.88739 0.88292 0.82055 0.83172 0.90064 0.93407 0.87464 0.91711 0.90067 0.92833 0.93835 0.92866 0.94312 0.93118 0.90041 0.93680 0.87871 0.88162 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.22 71.24 0.73 -0.23 16 2 C 0.19 3.16 6.83 42.64 0.29 3.45 16 3 C -0.19 -3.92 9.40 22.71 0.21 -3.70 16 4 C 0.13 3.15 6.63 41.98 0.28 3.42 16 5 C 0.56 16.94 7.61 86.97 0.66 17.60 16 6 O -0.55 -19.72 12.02 -3.65 -0.04 -19.76 16 7 N -0.58 -16.63 2.99 -797.51 -2.38 -19.01 16 8 C 0.07 1.54 5.93 86.28 0.51 2.05 16 9 C -0.13 -2.63 6.07 30.69 0.19 -2.44 16 10 C -0.12 -3.06 5.24 30.58 0.16 -2.90 16 11 C -0.10 -3.70 2.21 -10.74 -0.02 -3.72 16 12 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 13 C 0.13 5.56 3.48 86.29 0.30 5.86 16 14 N -0.62 -31.18 2.77 -698.89 -1.93 -33.11 16 15 C -0.25 -15.19 10.05 84.03 0.84 -14.34 16 16 H 0.04 2.83 8.06 -2.91 -0.02 2.81 16 17 C -0.04 -2.37 5.32 84.86 0.45 -1.92 16 18 N -0.96 -62.79 13.97 21.65 0.30 -62.49 16 19 Si 0.96 47.44 24.24 68.60 1.66 49.10 16 20 H -0.27 -12.28 6.58 99.48 0.65 -11.62 16 21 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 22 H -0.25 -11.83 6.36 99.48 0.63 -11.19 16 23 C 0.14 6.05 6.50 86.42 0.56 6.61 16 24 C -0.10 -3.91 3.79 30.66 0.12 -3.79 16 25 C 0.16 5.27 2.63 45.01 0.12 5.38 16 26 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 27 N -0.50 -10.20 6.20 -177.08 -1.10 -11.30 16 28 C 0.31 5.32 7.64 138.79 1.06 6.38 16 29 C -0.08 -0.74 10.32 71.24 0.73 -0.01 16 30 N -0.52 -9.35 10.25 -176.05 -1.81 -11.16 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 34 H 0.16 3.24 7.76 -2.91 -0.02 3.22 16 35 H 0.15 3.00 4.05 -58.28 -0.24 2.76 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 2.54 4.42 -2.39 -0.01 2.53 16 42 H 0.04 1.77 6.81 -2.39 -0.02 1.75 16 43 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 44 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 46 H 0.08 3.03 6.51 -2.39 -0.02 3.02 16 47 H 0.04 2.00 7.10 -2.39 -0.02 1.98 16 48 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.88 377.23 2.49 -74.39 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.59 Total: 15.63 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 7.19 Total: 17.70 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -6.92 Total: -137.06 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.04 Total: -19.76 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.66 Total: 49.10 kcal Total: -76.88 2.49 -74.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021690898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.771 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds