Wall clock time and date at job start Wed Apr 1 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38804 * 120.43008 * 2 1 4 4 C 1.39492 * 118.26902 * 180.02562 * 3 2 1 5 5 C 1.48453 * 120.55315 * 179.97438 * 4 3 2 6 6 O 1.21480 * 120.00006 * 339.12246 * 5 4 3 7 7 N 1.34775 * 119.99787 * 159.12681 * 5 4 3 8 8 C 1.47067 * 120.85037 * 0.42376 * 7 5 4 9 9 C 1.53127 * 109.04935 * 233.44490 * 8 7 5 10 10 C 1.53144 * 109.61811 * 306.00407 * 9 8 7 11 11 C 1.52816 * 109.26346 * 60.84709 * 10 9 8 12 12 H 1.08998 * 109.47642 * 58.00390 * 11 10 9 13 13 C 1.53068 * 110.34234 * 178.53924 * 11 10 9 14 14 N 1.47072 * 108.34207 * 175.43199 * 13 11 10 15 15 C 1.36930 * 120.46848 * 126.65887 * 14 13 11 16 16 H 1.08009 * 119.99699 * 216.62459 * 15 14 13 17 17 C 1.38804 * 120.00318 * 36.62771 * 15 14 13 18 18 N 1.31624 * 120.00050 * 359.28968 * 17 15 14 19 19 Si 1.86799 * 120.00132 * 179.28624 * 17 15 14 20 20 H 1.48503 * 109.47088 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47238 * 299.99819 * 19 17 15 22 22 H 1.48503 * 109.47217 * 59.99956 * 19 17 15 23 23 C 1.46860 * 119.05445 * 306.94088 * 14 13 11 24 24 C 1.52889 * 109.33672 * 52.34569 * 23 14 13 25 25 C 1.46719 * 120.84207 * 180.44641 * 7 5 4 26 26 H 1.08997 * 109.52808 * 245.18248 * 25 7 5 27 27 N 1.33106 * 118.89742 * 0.25353 * 4 3 2 28 28 C 1.31555 * 120.73728 * 359.48318 * 27 4 3 29 29 C 1.50699 * 119.04309 * 180.24672 * 28 27 4 30 30 N 1.31913 * 121.91570 * 0.53187 * 28 27 4 31 31 H 1.08998 * 109.47382 * 90.00217 * 1 2 3 32 32 H 1.08994 * 109.47273 * 210.00644 * 1 2 3 33 33 H 1.09004 * 109.46697 * 330.00263 * 1 2 3 34 34 H 1.08008 * 120.86837 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.54227 * 113.56996 * 8 7 5 36 36 H 1.09002 * 109.60785 * 353.35253 * 8 7 5 37 37 H 1.08995 * 109.44558 * 185.96056 * 9 8 7 38 38 H 1.08995 * 109.44677 * 66.05020 * 9 8 7 39 39 H 1.08998 * 109.50807 * 300.91196 * 10 9 8 40 40 H 1.09003 * 109.50729 * 180.78648 * 10 9 8 41 41 H 1.09007 * 109.69185 * 55.72069 * 13 11 10 42 42 H 1.09001 * 109.69454 * 295.15012 * 13 11 10 43 43 H 0.96998 * 120.00044 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.53264 * 172.28470 * 23 14 13 45 45 H 1.09000 * 109.53032 * 292.50881 * 23 14 13 46 46 H 1.08998 * 109.62847 * 186.19758 * 24 23 14 47 47 H 1.09000 * 109.50515 * 65.97265 * 24 23 14 48 48 H 1.08999 * 109.47129 * 270.27841 * 29 28 27 49 49 H 1.09000 * 109.47098 * 30.27812 * 29 28 27 50 50 H 1.08998 * 109.46966 * 150.27555 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4062 2.3933 -0.0011 6 8 3.9073 3.4355 -0.3761 7 7 5.6882 2.3709 0.4142 8 6 6.3137 1.1179 0.8631 9 6 6.9136 1.3298 2.2560 10 6 7.8571 2.5358 2.2314 11 6 7.0687 3.7848 1.8393 12 1 6.2533 3.9367 2.5464 13 6 7.9820 5.0132 1.8422 14 7 7.2092 6.1656 1.3544 15 6 7.1430 7.3187 2.0899 16 1 6.2273 7.8909 2.1157 17 6 8.2527 7.7523 2.8021 18 7 9.3643 7.0478 2.7818 19 14 8.1685 9.3359 3.7894 20 1 9.4753 9.5756 4.4528 21 1 7.8597 10.4696 2.8813 22 1 7.1039 9.2217 4.8184 23 6 6.5045 6.0597 0.0703 24 6 5.6300 4.8056 0.0746 25 6 6.4951 3.5962 0.4305 26 1 7.3112 3.5045 -0.2861 27 7 4.2027 -0.0445 -0.0062 28 6 3.4954 -1.1537 -0.0010 29 6 4.2129 -2.4789 -0.0021 30 7 2.1764 -1.1397 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5138 34 1 1.6913 2.1442 -0.0004 35 1 7.1019 0.8337 0.1660 36 1 5.5628 0.3290 0.9058 37 1 7.4698 0.4400 2.5507 38 1 6.1124 1.5104 2.9725 39 1 8.6502 2.3628 1.5039 40 1 8.2939 2.6765 3.2201 41 1 8.8347 4.8386 1.1860 42 1 8.3320 5.2083 2.8559 43 1 10.1396 7.3506 3.2798 44 1 5.8773 6.9393 -0.0749 45 1 7.2310 5.9911 -0.7395 46 1 5.1907 4.6621 -0.9125 47 1 4.8371 4.9174 0.8142 48 1 4.3855 -2.7978 -1.0300 49 1 5.1687 -2.3750 0.5115 50 1 3.6035 -3.2224 0.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021690902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:17 Heat of formation + Delta-G solvation = 57.112109 kcal Electronic energy + Delta-G solvation = -31480.282427 eV Core-core repulsion = 27508.942354 eV Total energy + Delta-G solvation = -3971.340072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.69460 -40.16077 -37.71163 -35.92599 -34.90982 -33.79709 -32.81185 -32.39586 -30.14468 -29.60697 -29.19807 -28.47926 -25.85888 -25.45539 -23.85327 -22.63335 -22.45847 -22.12512 -20.40362 -19.40963 -19.29026 -18.03384 -16.75018 -16.60751 -16.15252 -15.74823 -15.59218 -14.99995 -14.89741 -14.71428 -14.25279 -14.03012 -13.79996 -13.74632 -13.51605 -13.34924 -13.11632 -12.83898 -12.69846 -12.62672 -12.58169 -12.34496 -12.18309 -12.04731 -11.52078 -11.37949 -10.95369 -10.93479 -10.85766 -10.72614 -10.67402 -10.50868 -10.26554 -10.03483 -9.99272 -9.84031 -9.65675 -9.53698 -9.27355 -8.79592 -8.42398 -8.22261 -6.45847 -5.75235 -3.27817 0.33045 0.57920 2.68134 2.91887 3.40382 3.43482 3.44890 3.46581 3.53945 3.68749 4.13084 4.51373 4.58168 4.60200 4.94581 5.04195 5.11224 5.12774 5.16565 5.21190 5.21985 5.31063 5.42426 5.43760 5.46823 5.49960 5.60853 5.62786 5.67268 5.84378 5.88926 5.96200 6.07594 6.18550 6.26565 6.34991 6.43652 6.44281 6.52131 6.59828 6.63825 6.71340 6.84660 6.98580 7.06509 7.21253 7.41979 7.58091 7.69606 7.76895 7.83591 8.21894 8.57321 9.29061 9.88057 10.48802 11.32092 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.002883 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.472381 B = 9708.928507 C =10524.224885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.180 3.820 3 C -0.180 4.180 4 C 0.146 3.854 5 C 0.562 3.438 6 O -0.516 6.516 7 N -0.577 5.577 8 C 0.076 3.924 9 C -0.134 4.134 10 C -0.113 4.113 11 C -0.120 4.120 12 H 0.064 0.936 13 C 0.183 3.817 14 N -0.595 5.595 15 C -0.253 4.253 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.906 5.906 19 Si 0.903 3.097 20 H -0.290 1.290 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.140 3.860 24 C -0.121 4.121 25 C 0.154 3.846 26 H 0.069 0.931 27 N -0.492 5.492 28 C 0.313 3.687 29 C -0.085 4.085 30 N -0.512 5.512 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.094 0.906 43 H 0.254 0.746 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.936 -20.236 -4.836 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.033 3.967 3 C -0.203 4.203 4 C -0.001 4.001 5 C 0.347 3.653 6 O -0.392 6.392 7 N -0.308 5.308 8 C -0.047 4.047 9 C -0.172 4.172 10 C -0.151 4.151 11 C -0.142 4.142 12 H 0.083 0.917 13 C 0.057 3.943 14 N -0.317 5.317 15 C -0.383 4.383 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.216 1.216 21 H -0.208 1.208 22 H -0.210 1.210 23 C 0.014 3.986 24 C -0.160 4.160 25 C 0.053 3.947 26 H 0.087 0.913 27 N -0.210 5.210 28 C 0.047 3.953 29 C -0.144 4.144 30 N -0.228 5.228 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.177 0.823 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.527 -20.435 -4.967 23.982 hybrid contribution -0.216 1.579 0.597 1.702 sum -11.742 -18.856 -4.370 22.639 Atomic orbital electron populations 1.20811 0.87186 1.04384 1.03980 1.21826 0.97844 0.87629 0.89411 1.22766 0.94569 1.01338 1.01623 1.22022 0.92333 0.92650 0.93065 1.17878 0.81919 0.86216 0.79326 1.90866 1.70916 1.29429 1.47979 1.48215 1.10290 1.10959 1.61303 1.22795 0.99913 0.87034 0.94934 1.21950 0.99413 0.98947 0.96886 1.21504 0.97644 0.94084 1.01850 1.22309 0.99918 0.97113 0.94829 0.91736 1.20845 0.89951 0.82202 1.01326 1.44017 1.58248 1.11696 1.17747 1.19114 0.95102 0.99927 1.24130 0.92116 1.25323 0.95031 0.97784 1.00826 1.69900 1.02327 1.38422 1.44355 0.86367 0.76674 0.83918 0.79746 1.21606 1.20835 1.20972 1.21044 0.93639 0.95373 0.88586 1.22453 0.97334 0.93709 1.02481 1.21465 0.92643 0.82604 0.98009 0.91327 1.68291 1.39668 0.98315 1.14771 1.23411 0.86658 0.94876 0.90405 1.20605 1.00072 0.89546 1.04133 1.68044 1.09742 1.30498 1.14495 0.89364 0.89691 0.89711 0.82340 0.91665 0.85033 0.91304 0.92343 0.92121 0.91682 0.96398 0.88781 0.93539 0.92629 0.96812 0.90392 0.91710 0.89396 0.89310 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.22 36.00 0.37 -0.30 16 2 C 0.18 1.81 6.83 -82.24 -0.56 1.25 16 3 C -0.18 -2.10 9.41 -38.90 -0.37 -2.46 16 4 C 0.15 1.99 6.50 -82.64 -0.54 1.45 16 5 C 0.56 9.19 7.57 -12.05 -0.09 9.10 16 6 O -0.52 -9.57 12.18 5.38 0.07 -9.51 16 7 N -0.58 -9.31 2.97 -166.19 -0.49 -9.80 16 8 C 0.08 1.00 6.03 -3.67 -0.02 0.98 16 9 C -0.13 -1.76 6.07 -26.59 -0.16 -1.92 16 10 C -0.11 -1.79 5.24 -26.75 -0.14 -1.93 16 11 C -0.12 -2.35 2.21 -90.54 -0.20 -2.55 16 12 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.18 4.38 4.55 -3.69 -0.02 4.37 16 14 N -0.59 -15.37 3.00 -172.51 -0.52 -15.89 16 15 C -0.25 -7.10 9.52 -15.07 -0.14 -7.25 16 16 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 17 C 0.01 0.25 5.25 -17.43 -0.09 0.16 16 18 N -0.91 -26.23 10.85 55.49 0.60 -25.63 16 19 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.14 3.17 6.48 -3.90 -0.03 3.14 16 24 C -0.12 -2.43 3.79 -26.84 -0.10 -2.53 16 25 C 0.15 2.85 2.64 -67.72 -0.18 2.67 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 N -0.49 -6.02 6.43 -7.32 -0.05 -6.06 16 28 C 0.31 3.33 7.64 -157.30 -1.20 2.13 16 29 C -0.09 -0.58 10.31 36.01 0.37 -0.21 16 30 N -0.51 -5.54 10.25 -7.00 -0.07 -5.62 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.16 1.70 7.87 -52.48 -0.41 1.28 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.13 1.64 4.00 -75.47 -0.30 1.34 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 2.52 6.16 -51.93 -0.32 2.20 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 1.55 6.26 -51.93 -0.33 1.23 16 47 H 0.06 1.42 7.32 -51.93 -0.38 1.04 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -31.97 384.56 -10.83 -42.80 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.04 Total: 0.88 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -3.10 Total: 6.10 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.53 Total: -63.00 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.97 -10.83 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021690902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.910 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds