Wall clock time and date at job start Wed Apr 1 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38804 * 120.43008 * 2 1 4 4 C 1.39492 * 118.26902 * 180.02562 * 3 2 1 5 5 C 1.48453 * 120.55315 * 179.97438 * 4 3 2 6 6 O 1.21480 * 120.00006 * 339.12246 * 5 4 3 7 7 N 1.34775 * 119.99787 * 159.12681 * 5 4 3 8 8 C 1.47067 * 120.85037 * 0.42376 * 7 5 4 9 9 C 1.53127 * 109.04935 * 233.44490 * 8 7 5 10 10 C 1.53144 * 109.61811 * 306.00407 * 9 8 7 11 11 C 1.52816 * 109.26346 * 60.84709 * 10 9 8 12 12 H 1.08998 * 109.47642 * 58.00390 * 11 10 9 13 13 C 1.53068 * 110.34234 * 178.53924 * 11 10 9 14 14 N 1.47072 * 108.34207 * 175.43199 * 13 11 10 15 15 C 1.36930 * 120.46848 * 126.65887 * 14 13 11 16 16 H 1.08009 * 119.99699 * 216.62459 * 15 14 13 17 17 C 1.38804 * 120.00318 * 36.62771 * 15 14 13 18 18 N 1.31624 * 120.00050 * 359.28968 * 17 15 14 19 19 Si 1.86799 * 120.00132 * 179.28624 * 17 15 14 20 20 H 1.48503 * 109.47088 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47238 * 299.99819 * 19 17 15 22 22 H 1.48503 * 109.47217 * 59.99956 * 19 17 15 23 23 C 1.46860 * 119.05445 * 306.94088 * 14 13 11 24 24 C 1.52889 * 109.33672 * 52.34569 * 23 14 13 25 25 C 1.46719 * 120.84207 * 180.44641 * 7 5 4 26 26 H 1.08997 * 109.52808 * 245.18248 * 25 7 5 27 27 N 1.33106 * 118.89742 * 0.25353 * 4 3 2 28 28 C 1.31555 * 120.73728 * 359.48318 * 27 4 3 29 29 C 1.50699 * 119.04309 * 180.24672 * 28 27 4 30 30 N 1.31913 * 121.91570 * 0.53187 * 28 27 4 31 31 H 1.08998 * 109.47382 * 90.00217 * 1 2 3 32 32 H 1.08994 * 109.47273 * 210.00644 * 1 2 3 33 33 H 1.09004 * 109.46697 * 330.00263 * 1 2 3 34 34 H 1.08008 * 120.86837 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.54227 * 113.56996 * 8 7 5 36 36 H 1.09002 * 109.60785 * 353.35253 * 8 7 5 37 37 H 1.08995 * 109.44558 * 185.96056 * 9 8 7 38 38 H 1.08995 * 109.44677 * 66.05020 * 9 8 7 39 39 H 1.08998 * 109.50807 * 300.91196 * 10 9 8 40 40 H 1.09003 * 109.50729 * 180.78648 * 10 9 8 41 41 H 1.09007 * 109.69185 * 55.72069 * 13 11 10 42 42 H 1.09001 * 109.69454 * 295.15012 * 13 11 10 43 43 H 0.96998 * 120.00044 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.53264 * 172.28470 * 23 14 13 45 45 H 1.09000 * 109.53032 * 292.50881 * 23 14 13 46 46 H 1.08998 * 109.62847 * 186.19758 * 24 23 14 47 47 H 1.09000 * 109.50515 * 65.97265 * 24 23 14 48 48 H 1.08999 * 109.47129 * 270.27841 * 29 28 27 49 49 H 1.09000 * 109.47098 * 30.27812 * 29 28 27 50 50 H 1.08998 * 109.46966 * 150.27555 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4062 2.3933 -0.0011 6 8 3.9073 3.4355 -0.3761 7 7 5.6882 2.3709 0.4142 8 6 6.3137 1.1179 0.8631 9 6 6.9136 1.3298 2.2560 10 6 7.8571 2.5358 2.2314 11 6 7.0687 3.7848 1.8393 12 1 6.2533 3.9367 2.5464 13 6 7.9820 5.0132 1.8422 14 7 7.2092 6.1656 1.3544 15 6 7.1430 7.3187 2.0899 16 1 6.2273 7.8909 2.1157 17 6 8.2527 7.7523 2.8021 18 7 9.3643 7.0478 2.7818 19 14 8.1685 9.3359 3.7894 20 1 9.4753 9.5756 4.4528 21 1 7.8597 10.4696 2.8813 22 1 7.1039 9.2217 4.8184 23 6 6.5045 6.0597 0.0703 24 6 5.6300 4.8056 0.0746 25 6 6.4951 3.5962 0.4305 26 1 7.3112 3.5045 -0.2861 27 7 4.2027 -0.0445 -0.0062 28 6 3.4954 -1.1537 -0.0010 29 6 4.2129 -2.4789 -0.0021 30 7 2.1764 -1.1397 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5138 34 1 1.6913 2.1442 -0.0004 35 1 7.1019 0.8337 0.1660 36 1 5.5628 0.3290 0.9058 37 1 7.4698 0.4400 2.5507 38 1 6.1124 1.5104 2.9725 39 1 8.6502 2.3628 1.5039 40 1 8.2939 2.6765 3.2201 41 1 8.8347 4.8386 1.1860 42 1 8.3320 5.2083 2.8559 43 1 10.1396 7.3506 3.2798 44 1 5.8773 6.9393 -0.0749 45 1 7.2310 5.9911 -0.7395 46 1 5.1907 4.6621 -0.9125 47 1 4.8371 4.9174 0.8142 48 1 4.3855 -2.7978 -1.0300 49 1 5.1687 -2.3750 0.5115 50 1 3.6035 -3.2224 0.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021690902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:16 Heat of formation + Delta-G solvation = 39.148822 kcal Electronic energy + Delta-G solvation = -31481.061373 eV Core-core repulsion = 27508.942354 eV Total energy + Delta-G solvation = -3972.119019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.64680 -41.43354 -39.19548 -37.45928 -35.84781 -34.81452 -34.30093 -34.01076 -31.87813 -30.89802 -30.16701 -29.23560 -27.46241 -26.90088 -25.23845 -24.00308 -23.86352 -23.22875 -21.72181 -21.17325 -20.54335 -19.03047 -18.71533 -17.76809 -17.21038 -16.97636 -16.72155 -16.65617 -16.15237 -15.85065 -15.57265 -15.43680 -15.24740 -15.14113 -14.70199 -14.39457 -14.24675 -14.10168 -13.89726 -13.65024 -13.54393 -13.32313 -13.21807 -13.18643 -13.08281 -12.80144 -12.76194 -12.62080 -12.39885 -12.17254 -12.06949 -11.90792 -11.76246 -11.69733 -11.56967 -11.39888 -11.14516 -10.72426 -10.55156 -10.46005 -9.95033 -9.60690 -8.54000 -7.88814 -5.46255 -0.62860 -0.22014 1.44393 1.46695 1.53404 1.54199 1.71334 2.47682 2.54118 2.71651 2.87543 3.20225 3.26742 3.61371 3.64994 3.84113 3.84383 3.87780 4.00722 4.09821 4.24858 4.29674 4.31742 4.37931 4.46336 4.60590 4.67673 4.70637 4.72450 4.76767 4.79518 4.83400 4.87033 4.90501 4.94169 5.00740 5.05572 5.08186 5.17289 5.20055 5.27487 5.35583 5.39722 5.44278 5.53248 5.60766 5.66623 5.74519 5.77606 6.31147 6.43555 6.82260 6.97439 7.15870 7.81614 8.37249 9.15454 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.002883 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.472381 B = 9708.928507 C =10524.224885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.186 3.814 3 C -0.187 4.187 4 C 0.128 3.872 5 C 0.557 3.443 6 O -0.548 6.548 7 N -0.580 5.580 8 C 0.075 3.925 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.107 4.107 12 H 0.041 0.959 13 C 0.194 3.806 14 N -0.614 5.614 15 C -0.273 4.273 16 H 0.056 0.944 17 C -0.039 4.039 18 N -0.930 5.930 19 Si 0.970 3.030 20 H -0.288 1.288 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.139 3.861 24 C -0.100 4.100 25 C 0.161 3.839 26 H 0.070 0.930 27 N -0.500 5.500 28 C 0.309 3.691 29 C -0.084 4.084 30 N -0.518 5.518 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.001 0.999 42 H 0.062 0.938 43 H 0.253 0.747 44 H 0.050 0.950 45 H 0.015 0.985 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 -22.803 -4.878 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.038 3.962 3 C -0.210 4.210 4 C -0.017 4.017 5 C 0.344 3.656 6 O -0.426 6.426 7 N -0.309 5.309 8 C -0.046 4.046 9 C -0.162 4.162 10 C -0.147 4.147 11 C -0.128 4.128 12 H 0.059 0.941 13 C 0.068 3.932 14 N -0.337 5.337 15 C -0.403 4.403 16 H 0.074 0.926 17 C -0.235 4.235 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H -0.203 1.203 23 C 0.013 3.987 24 C -0.139 4.139 25 C 0.058 3.942 26 H 0.088 0.912 27 N -0.219 5.219 28 C 0.042 3.958 29 C -0.142 4.142 30 N -0.234 5.234 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.020 0.980 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.620 -23.043 -5.014 26.747 hybrid contribution 0.055 2.325 0.566 2.394 sum -12.564 -20.718 -4.448 24.635 Atomic orbital electron populations 1.20951 0.84424 1.05544 1.05222 1.22398 0.99523 0.86740 0.87559 1.22899 0.93910 1.02339 1.01872 1.21600 0.92703 0.92094 0.95297 1.18285 0.81859 0.87031 0.78468 1.90826 1.71497 1.30982 1.49261 1.48222 1.10353 1.10884 1.61476 1.23043 1.00595 0.85915 0.95063 1.21910 0.98733 0.98798 0.96762 1.21477 0.97992 0.93441 1.01777 1.22026 0.98597 0.96980 0.95180 0.94074 1.20601 0.90248 0.83621 0.98771 1.44281 1.58713 1.11934 1.18819 1.19376 0.95247 1.00878 1.24849 0.92622 1.26049 0.94677 1.00759 1.02057 1.70072 1.02744 1.39605 1.45068 0.85330 0.76658 0.80004 0.78326 1.21384 1.20266 1.20331 1.21123 0.93628 0.96569 0.87368 1.22190 0.96220 0.93469 1.02056 1.21159 0.92629 0.83320 0.97044 0.91181 1.68179 1.39924 0.98162 1.15597 1.24160 0.86939 0.95576 0.89084 1.20772 1.00415 0.87694 1.05290 1.68196 1.09924 1.30601 1.14671 0.87854 0.88748 0.88333 0.82061 0.90317 0.83624 0.87716 0.93198 0.91264 0.91993 0.98049 0.92004 0.93802 0.93174 0.96687 0.89890 0.93849 0.88090 0.88146 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.22 71.23 0.73 -0.29 16 2 C 0.19 3.34 6.83 42.64 0.29 3.64 16 3 C -0.19 -4.16 9.41 22.71 0.21 -3.95 16 4 C 0.13 3.39 6.50 41.98 0.27 3.66 16 5 C 0.56 18.19 7.57 86.97 0.66 18.85 16 6 O -0.55 -20.73 12.18 -3.65 -0.04 -20.78 16 7 N -0.58 -18.40 2.97 -798.02 -2.37 -20.78 16 8 C 0.07 1.83 6.03 86.31 0.52 2.35 16 9 C -0.12 -3.00 6.07 30.68 0.19 -2.82 16 10 C -0.11 -3.39 5.24 30.58 0.16 -3.23 16 11 C -0.11 -4.27 2.21 -10.74 -0.02 -4.29 16 12 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 13 C 0.19 9.67 4.55 86.29 0.39 10.07 16 14 N -0.61 -33.08 3.00 -699.70 -2.10 -35.17 16 15 C -0.27 -15.88 9.52 84.03 0.80 -15.08 16 16 H 0.06 3.22 7.83 -2.91 -0.02 3.19 16 17 C -0.04 -2.25 5.25 84.86 0.45 -1.81 16 18 N -0.93 -55.38 10.85 21.65 0.24 -55.15 16 19 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C 0.14 6.53 6.48 86.27 0.56 7.09 16 24 C -0.10 -4.18 3.79 30.52 0.12 -4.06 16 25 C 0.16 6.03 2.64 45.01 0.12 6.15 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 N -0.50 -11.25 6.43 -177.09 -1.14 -12.39 16 28 C 0.31 5.78 7.64 138.79 1.06 6.84 16 29 C -0.08 -0.86 10.31 71.24 0.73 -0.13 16 30 N -0.52 -9.93 10.25 -176.06 -1.81 -11.74 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.72 8.10 -2.38 -0.02 0.70 16 34 H 0.16 3.38 7.87 -2.91 -0.02 3.36 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.15 3.27 4.00 -48.86 -0.20 3.08 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 42 H 0.06 3.48 6.16 -2.39 -0.01 3.46 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.05 2.35 7.93 -2.38 -0.02 2.33 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 46 H 0.08 3.39 6.26 -2.39 -0.01 3.38 16 47 H 0.04 1.98 7.32 -2.39 -0.02 1.96 16 48 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -71.68 384.56 2.79 -68.89 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.75 Total: 16.17 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 7.23 Total: 23.00 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -7.18 Total: -135.23 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.04 Total: -20.78 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.68 2.79 -68.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021690902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.036 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds