Wall clock time and date at job start Wed Apr 1 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38803 * 120.42867 * 2 1 4 4 C 1.39495 * 118.26459 * 179.97438 * 3 2 1 5 5 C 1.48458 * 120.54996 * 180.02562 * 4 3 2 6 6 O 1.21475 * 119.99823 * 342.42944 * 5 4 3 7 7 N 1.34773 * 120.00087 * 162.43207 * 5 4 3 8 8 C 1.46949 * 120.84200 * 353.69990 * 7 5 4 9 9 C 1.53147 * 109.02186 * 126.00275 * 8 7 5 10 10 C 1.53114 * 109.46787 * 54.09159 * 9 8 7 11 11 C 1.54402 * 109.72946 * 299.31563 * 10 9 8 12 12 H 1.08995 * 109.06561 * 302.61395 * 11 10 9 13 13 C 1.52762 * 111.20075 * 182.89461 * 11 10 9 14 14 N 1.46889 * 109.20632 * 292.96102 * 13 11 10 15 15 C 1.36939 * 120.77306 * 126.66425 * 14 13 11 16 16 H 1.08003 * 120.00033 * 207.27344 * 15 14 13 17 17 C 1.38813 * 119.99741 * 27.27716 * 15 14 13 18 18 N 1.31614 * 120.00716 * 17.58826 * 17 15 14 19 19 Si 1.86811 * 119.99726 * 197.58898 * 17 15 14 20 20 H 1.48497 * 109.46982 * 59.99901 * 19 17 15 21 21 H 1.48495 * 109.46884 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46940 * 299.99978 * 19 17 15 23 23 C 1.45536 * 118.65792 * 307.10766 * 14 13 11 24 24 C 1.53095 * 109.36999 * 53.58306 * 23 14 13 25 25 C 1.47300 * 120.84404 * 173.72373 * 7 5 4 26 26 H 1.09000 * 110.06199 * 355.74054 * 25 7 5 27 27 N 1.33104 * 118.90191 * 0.27123 * 4 3 2 28 28 C 1.31560 * 120.73608 * 359.44805 * 27 4 3 29 29 C 1.50700 * 119.04189 * 180.28644 * 28 27 4 30 30 N 1.31913 * 121.91312 * 0.56638 * 28 27 4 31 31 H 1.09003 * 109.47134 * 89.99676 * 1 2 3 32 32 H 1.09002 * 109.47128 * 210.00036 * 1 2 3 33 33 H 1.08997 * 109.47348 * 330.00019 * 1 2 3 34 34 H 1.07998 * 120.86664 * 359.95417 * 3 2 1 35 35 H 1.08995 * 109.54831 * 245.86555 * 8 7 5 36 36 H 1.09005 * 109.54440 * 6.14769 * 8 7 5 37 37 H 1.08998 * 109.47307 * 174.09024 * 9 8 7 38 38 H 1.09001 * 109.46963 * 294.09337 * 9 8 7 39 39 H 1.08995 * 109.49628 * 59.30497 * 10 9 8 40 40 H 1.09007 * 109.49088 * 179.35629 * 10 9 8 41 41 H 1.09004 * 109.51781 * 52.88189 * 13 11 10 42 42 H 1.09000 * 109.51703 * 172.98747 * 13 11 10 43 43 H 0.96999 * 120.00960 * 180.02562 * 18 17 15 44 44 H 1.08998 * 108.57817 * 294.00981 * 23 14 13 45 45 H 1.09002 * 109.88755 * 173.95329 * 23 14 13 46 46 H 1.09001 * 109.45400 * 185.40406 * 24 23 14 47 47 H 1.09003 * 109.45632 * 65.45372 * 24 23 14 48 48 H 1.08996 * 109.46757 * 270.27435 * 29 28 27 49 49 H 1.09003 * 109.46938 * 30.27697 * 29 28 27 50 50 H 1.08995 * 109.46672 * 150.27289 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1442 0.0005 5 6 4.4062 2.3933 0.0011 6 8 3.8907 3.4464 -0.3164 7 7 5.7065 2.3588 0.3540 8 6 6.3141 1.1252 0.8721 9 6 7.5542 0.7910 0.0379 10 6 8.4942 1.9994 0.0144 11 6 7.7751 3.2067 -0.6255 12 1 7.4448 2.9341 -1.6278 13 6 8.7071 4.4124 -0.7311 14 7 9.0263 4.8962 0.6187 15 6 10.3268 5.0582 1.0156 16 1 10.5864 4.9782 2.0609 17 6 11.3115 5.3253 0.0743 18 7 10.9779 5.7620 -1.1215 19 14 13.1106 5.0647 0.5051 20 1 13.3327 3.6407 0.8626 21 1 13.9556 5.4189 -0.6635 22 1 13.4732 5.9270 1.6584 23 6 7.9317 5.1913 1.5313 24 6 7.0118 3.9717 1.6321 25 6 6.5545 3.5569 0.2304 26 1 5.9921 4.3668 -0.2342 27 7 4.2027 -0.0445 -0.0045 28 6 3.4954 -1.1538 0.0010 29 6 4.2130 -2.4790 0.0016 30 7 2.1764 -1.1397 0.0006 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6912 2.1441 -0.0007 35 1 6.6030 1.2703 1.9130 36 1 5.5963 0.3078 0.8019 37 1 8.0699 -0.0619 0.4792 38 1 7.2519 0.5459 -0.9802 39 1 8.7868 2.2526 1.0333 40 1 9.3823 1.7581 -0.5698 41 1 9.6257 4.1193 -1.2395 42 1 8.2154 5.2045 -1.2958 43 1 11.6659 5.9483 -1.7794 44 1 7.3719 6.0403 1.1391 45 1 8.3267 5.4342 2.5178 46 1 6.1415 4.2225 2.2385 47 1 7.5521 3.1467 2.0966 48 1 4.3863 -2.7987 -1.0259 49 1 5.1684 -2.3746 0.5159 50 1 3.6031 -3.2220 0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021690903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:21 Heat of formation + Delta-G solvation = 47.400467 kcal Electronic energy + Delta-G solvation = -31531.792127 eV Core-core repulsion = 27560.030926 eV Total energy + Delta-G solvation = -3971.761201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.70851 -40.05933 -38.06497 -35.77366 -34.89642 -33.77605 -32.50220 -32.36256 -30.26569 -29.62287 -29.42202 -28.53363 -25.86705 -25.52330 -24.03650 -22.60472 -22.31042 -21.96409 -21.29516 -19.74763 -18.29324 -17.81368 -16.98374 -16.48918 -16.32479 -15.74819 -15.65270 -15.02897 -14.84883 -14.79343 -14.32680 -14.03191 -13.85658 -13.68372 -13.50008 -13.29246 -13.06662 -12.87227 -12.82296 -12.64867 -12.61842 -12.39137 -12.24910 -12.15351 -11.52414 -11.36179 -11.05349 -10.94140 -10.74496 -10.66056 -10.55916 -10.42878 -10.32407 -10.07984 -10.03468 -9.95443 -9.70027 -9.65300 -9.46732 -8.93569 -8.49134 -8.24796 -6.67579 -5.78648 -3.19697 0.28289 0.55378 2.62855 2.90321 3.38463 3.42264 3.44686 3.45436 3.51819 3.65788 4.11596 4.50409 4.54632 4.57592 4.92256 5.02941 5.10229 5.13901 5.18696 5.23376 5.31863 5.36843 5.40503 5.44039 5.47776 5.50248 5.55857 5.62519 5.64578 5.83320 5.87797 5.95164 6.06262 6.23230 6.27227 6.32474 6.39517 6.45666 6.48012 6.57917 6.59748 6.71457 6.80462 6.92689 6.98232 7.06902 7.32356 7.53216 7.65180 7.68388 7.79764 8.12934 8.45817 9.21722 9.86628 10.41621 11.30391 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.002823 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.834420 B = 9914.488556 C =10623.729456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.181 3.819 3 C -0.181 4.181 4 C 0.148 3.852 5 C 0.563 3.437 6 O -0.532 6.532 7 N -0.575 5.575 8 C 0.065 3.935 9 C -0.124 4.124 10 C -0.106 4.106 11 C -0.112 4.112 12 H 0.055 0.945 13 C 0.178 3.822 14 N -0.587 5.587 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.151 3.849 24 C -0.141 4.141 25 C 0.151 3.849 26 H 0.093 0.907 27 N -0.487 5.487 28 C 0.315 3.685 29 C -0.086 4.086 30 N -0.511 5.511 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.021 0.979 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.725 -15.954 2.785 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.033 3.967 3 C -0.204 4.204 4 C 0.002 3.998 5 C 0.347 3.653 6 O -0.408 6.408 7 N -0.305 5.305 8 C -0.057 4.057 9 C -0.162 4.162 10 C -0.144 4.144 11 C -0.133 4.133 12 H 0.074 0.926 13 C 0.052 3.948 14 N -0.309 5.309 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.024 3.976 24 C -0.181 4.181 25 C 0.049 3.951 26 H 0.111 0.889 27 N -0.206 5.206 28 C 0.049 3.951 29 C -0.144 4.144 30 N -0.227 5.227 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.177 0.823 35 H 0.075 0.925 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.369 -16.150 2.471 23.846 hybrid contribution 0.644 0.711 0.096 0.965 sum -16.725 -15.439 2.567 22.906 Atomic orbital electron populations 1.20813 0.87162 1.04363 1.04019 1.21835 0.97857 0.87615 0.89355 1.22765 0.94550 1.01338 1.01708 1.21848 0.92177 0.92514 0.93296 1.17807 0.82135 0.86436 0.78896 1.90786 1.70620 1.29916 1.49484 1.48398 1.08008 1.13463 1.60604 1.22909 0.98076 0.88076 0.96646 1.21818 0.95754 0.98535 1.00136 1.21720 0.97163 0.93104 1.02397 1.22294 0.95421 0.98650 0.96982 0.92631 1.20702 0.97119 0.90075 0.86939 1.43660 1.01373 1.75104 1.10737 1.19111 0.83078 1.42686 0.93239 0.91710 1.24987 0.98192 0.99285 0.96997 1.70015 1.32225 1.46674 1.05733 0.86409 0.85207 0.78170 0.77235 1.21066 1.21690 1.20933 1.20574 0.89478 0.92799 0.94777 1.22423 0.99334 1.01023 0.95368 1.21474 0.90524 0.85809 0.97259 0.88894 1.68164 1.39329 0.98306 1.14754 1.23445 0.86616 0.94891 0.90189 1.20621 1.00104 0.89463 1.04253 1.68055 1.09738 1.30463 1.14431 0.89335 0.89661 0.89736 0.82341 0.92533 0.84390 0.91546 0.92223 0.90791 0.92264 0.88885 0.96120 0.93566 0.96522 0.92456 0.93101 0.91573 0.89299 0.89219 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.22 36.00 0.37 -0.25 16 2 C 0.18 1.76 6.83 -82.24 -0.56 1.20 16 3 C -0.18 -2.04 9.40 -38.90 -0.37 -2.41 16 4 C 0.15 2.01 6.53 -82.64 -0.54 1.47 16 5 C 0.56 9.23 7.65 -12.05 -0.09 9.14 16 6 O -0.53 -10.06 16.03 5.39 0.09 -9.97 16 7 N -0.58 -9.32 2.67 -165.77 -0.44 -9.76 16 8 C 0.07 0.91 5.68 -3.72 -0.02 0.89 16 9 C -0.12 -1.75 6.10 -26.60 -0.16 -1.92 16 10 C -0.11 -1.87 4.95 -25.94 -0.13 -2.00 16 11 C -0.11 -2.18 2.51 -89.94 -0.23 -2.40 16 12 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.18 4.20 4.76 -3.95 -0.02 4.18 16 14 N -0.59 -14.34 2.70 -173.77 -0.47 -14.80 16 15 C -0.25 -6.73 9.57 -15.06 -0.14 -6.87 16 16 H 0.07 1.70 7.88 -52.48 -0.41 1.29 16 17 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -25.90 11.18 55.49 0.62 -25.28 16 19 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.15 3.19 6.41 -4.51 -0.03 3.16 16 24 C -0.14 -2.56 5.04 -26.60 -0.13 -2.69 16 25 C 0.15 2.77 2.60 -67.34 -0.18 2.59 16 26 H 0.09 1.89 7.09 -51.93 -0.37 1.52 16 27 N -0.49 -6.02 6.42 -7.32 -0.05 -6.07 16 28 C 0.32 3.36 7.64 -157.29 -1.20 2.16 16 29 C -0.09 -0.61 10.31 36.01 0.37 -0.23 16 30 N -0.51 -5.45 10.25 -7.00 -0.07 -5.53 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.16 1.62 7.83 -52.49 -0.41 1.21 16 35 H 0.06 0.78 7.25 -51.93 -0.38 0.41 16 36 H 0.14 1.78 3.77 -82.88 -0.31 1.46 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.41 6.22 -51.93 -0.32 1.09 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.09 2.44 6.03 -51.93 -0.31 2.13 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.17 7.92 -51.93 -0.41 0.76 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.19 5.33 -51.93 -0.28 0.91 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -31.32 384.71 -10.53 -41.85 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.83 Total: 1.31 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -3.15 Total: 6.04 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.41 Total: -61.44 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.32 -10.53 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021690903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.255 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds