Wall clock time and date at job start Wed Apr 1 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38803 * 120.42867 * 2 1 4 4 C 1.39495 * 118.26459 * 179.97438 * 3 2 1 5 5 C 1.48458 * 120.54996 * 180.02562 * 4 3 2 6 6 O 1.21475 * 119.99823 * 342.42944 * 5 4 3 7 7 N 1.34773 * 120.00087 * 162.43207 * 5 4 3 8 8 C 1.46949 * 120.84200 * 353.69990 * 7 5 4 9 9 C 1.53147 * 109.02186 * 126.00275 * 8 7 5 10 10 C 1.53114 * 109.46787 * 54.09159 * 9 8 7 11 11 C 1.54402 * 109.72946 * 299.31563 * 10 9 8 12 12 H 1.08995 * 109.06561 * 302.61395 * 11 10 9 13 13 C 1.52762 * 111.20075 * 182.89461 * 11 10 9 14 14 N 1.46889 * 109.20632 * 292.96102 * 13 11 10 15 15 C 1.36939 * 120.77306 * 126.66425 * 14 13 11 16 16 H 1.08003 * 120.00033 * 207.27344 * 15 14 13 17 17 C 1.38813 * 119.99741 * 27.27716 * 15 14 13 18 18 N 1.31614 * 120.00716 * 17.58826 * 17 15 14 19 19 Si 1.86811 * 119.99726 * 197.58898 * 17 15 14 20 20 H 1.48497 * 109.46982 * 59.99901 * 19 17 15 21 21 H 1.48495 * 109.46884 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46940 * 299.99978 * 19 17 15 23 23 C 1.45536 * 118.65792 * 307.10766 * 14 13 11 24 24 C 1.53095 * 109.36999 * 53.58306 * 23 14 13 25 25 C 1.47300 * 120.84404 * 173.72373 * 7 5 4 26 26 H 1.09000 * 110.06199 * 355.74054 * 25 7 5 27 27 N 1.33104 * 118.90191 * 0.27123 * 4 3 2 28 28 C 1.31560 * 120.73608 * 359.44805 * 27 4 3 29 29 C 1.50700 * 119.04189 * 180.28644 * 28 27 4 30 30 N 1.31913 * 121.91312 * 0.56638 * 28 27 4 31 31 H 1.09003 * 109.47134 * 89.99676 * 1 2 3 32 32 H 1.09002 * 109.47128 * 210.00036 * 1 2 3 33 33 H 1.08997 * 109.47348 * 330.00019 * 1 2 3 34 34 H 1.07998 * 120.86664 * 359.95417 * 3 2 1 35 35 H 1.08995 * 109.54831 * 245.86555 * 8 7 5 36 36 H 1.09005 * 109.54440 * 6.14769 * 8 7 5 37 37 H 1.08998 * 109.47307 * 174.09024 * 9 8 7 38 38 H 1.09001 * 109.46963 * 294.09337 * 9 8 7 39 39 H 1.08995 * 109.49628 * 59.30497 * 10 9 8 40 40 H 1.09007 * 109.49088 * 179.35629 * 10 9 8 41 41 H 1.09004 * 109.51781 * 52.88189 * 13 11 10 42 42 H 1.09000 * 109.51703 * 172.98747 * 13 11 10 43 43 H 0.96999 * 120.00960 * 180.02562 * 18 17 15 44 44 H 1.08998 * 108.57817 * 294.00981 * 23 14 13 45 45 H 1.09002 * 109.88755 * 173.95329 * 23 14 13 46 46 H 1.09001 * 109.45400 * 185.40406 * 24 23 14 47 47 H 1.09003 * 109.45632 * 65.45372 * 24 23 14 48 48 H 1.08996 * 109.46757 * 270.27435 * 29 28 27 49 49 H 1.09003 * 109.46938 * 30.27697 * 29 28 27 50 50 H 1.08995 * 109.46672 * 150.27289 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1442 0.0005 5 6 4.4062 2.3933 0.0011 6 8 3.8907 3.4464 -0.3164 7 7 5.7065 2.3588 0.3540 8 6 6.3141 1.1252 0.8721 9 6 7.5542 0.7910 0.0379 10 6 8.4942 1.9994 0.0144 11 6 7.7751 3.2067 -0.6255 12 1 7.4448 2.9341 -1.6278 13 6 8.7071 4.4124 -0.7311 14 7 9.0263 4.8962 0.6187 15 6 10.3268 5.0582 1.0156 16 1 10.5864 4.9782 2.0609 17 6 11.3115 5.3253 0.0743 18 7 10.9779 5.7620 -1.1215 19 14 13.1106 5.0647 0.5051 20 1 13.3327 3.6407 0.8626 21 1 13.9556 5.4189 -0.6635 22 1 13.4732 5.9270 1.6584 23 6 7.9317 5.1913 1.5313 24 6 7.0118 3.9717 1.6321 25 6 6.5545 3.5569 0.2304 26 1 5.9921 4.3668 -0.2342 27 7 4.2027 -0.0445 -0.0045 28 6 3.4954 -1.1538 0.0010 29 6 4.2130 -2.4790 0.0016 30 7 2.1764 -1.1397 0.0006 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6912 2.1441 -0.0007 35 1 6.6030 1.2703 1.9130 36 1 5.5963 0.3078 0.8019 37 1 8.0699 -0.0619 0.4792 38 1 7.2519 0.5459 -0.9802 39 1 8.7868 2.2526 1.0333 40 1 9.3823 1.7581 -0.5698 41 1 9.6257 4.1193 -1.2395 42 1 8.2154 5.2045 -1.2958 43 1 11.6659 5.9483 -1.7794 44 1 7.3719 6.0403 1.1391 45 1 8.3267 5.4342 2.5178 46 1 6.1415 4.2225 2.2385 47 1 7.5521 3.1467 2.0966 48 1 4.3863 -2.7987 -1.0259 49 1 5.1684 -2.3746 0.5159 50 1 3.6031 -3.2220 0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021690903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:20 Heat of formation + Delta-G solvation = 30.216963 kcal Electronic energy + Delta-G solvation = -31532.537260 eV Core-core repulsion = 27560.030926 eV Total energy + Delta-G solvation = -3972.506334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.63578 -41.36412 -39.53389 -37.28092 -35.83495 -34.70043 -34.14948 -33.86206 -31.91057 -31.15222 -30.17454 -29.26034 -27.48482 -26.91811 -25.45410 -23.83713 -23.58968 -23.23061 -22.81710 -21.01981 -19.59783 -19.19164 -18.53757 -17.76759 -17.45841 -16.98327 -16.70588 -16.62228 -16.10817 -15.90079 -15.84721 -15.31449 -15.18349 -15.06017 -14.64524 -14.51310 -14.25693 -14.17022 -13.98775 -13.65869 -13.60575 -13.32750 -13.22468 -13.17913 -13.07790 -12.90762 -12.61453 -12.52910 -12.36723 -12.06113 -11.97789 -11.83533 -11.79105 -11.62250 -11.54083 -11.41477 -11.33101 -11.06561 -10.52096 -10.51313 -9.97870 -9.63345 -8.70269 -7.86863 -5.31125 -0.66748 -0.22852 1.48075 1.49424 1.50391 1.56995 1.68733 2.52444 2.52939 2.69764 2.86569 3.19551 3.29074 3.60418 3.65458 3.75654 3.85246 3.92170 4.05360 4.14270 4.20811 4.24406 4.31628 4.35178 4.45946 4.57268 4.65612 4.68968 4.71434 4.73895 4.77055 4.82847 4.89572 4.90786 4.95524 5.02812 5.08851 5.13006 5.14458 5.18148 5.20262 5.28943 5.37518 5.47108 5.58738 5.61969 5.66225 5.69393 5.73507 6.29720 6.39350 6.77674 6.92352 7.14571 7.86101 8.37914 9.20666 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.002823 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.834420 B = 9914.488556 C =10623.729456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.187 3.813 3 C -0.184 4.184 4 C 0.129 3.871 5 C 0.560 3.440 6 O -0.566 6.566 7 N -0.576 5.576 8 C 0.066 3.934 9 C -0.113 4.113 10 C -0.098 4.098 11 C -0.103 4.103 12 H 0.052 0.948 13 C 0.189 3.811 14 N -0.599 5.599 15 C -0.258 4.258 16 H 0.070 0.930 17 C -0.049 4.049 18 N -0.937 5.937 19 Si 0.965 3.035 20 H -0.276 1.276 21 H -0.297 1.297 22 H -0.276 1.276 23 C 0.148 3.852 24 C -0.125 4.125 25 C 0.158 3.842 26 H 0.067 0.933 27 N -0.499 5.499 28 C 0.311 3.689 29 C -0.085 4.085 30 N -0.516 5.516 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.165 0.835 35 H 0.063 0.937 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.063 0.937 42 H -0.012 1.012 43 H 0.249 0.751 44 H 0.004 0.996 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.036 -19.020 4.255 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.039 3.961 3 C -0.207 4.207 4 C -0.016 4.016 5 C 0.347 3.653 6 O -0.445 6.445 7 N -0.305 5.305 8 C -0.056 4.056 9 C -0.151 4.151 10 C -0.136 4.136 11 C -0.124 4.124 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.322 5.322 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.244 4.244 18 N -0.583 5.583 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.202 1.202 23 C 0.022 3.978 24 C -0.164 4.164 25 C 0.055 3.945 26 H 0.086 0.914 27 N -0.217 5.217 28 C 0.045 3.955 29 C -0.143 4.143 30 N -0.232 5.232 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.182 0.818 35 H 0.081 0.919 36 H 0.174 0.826 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.006 0.994 43 H 0.058 0.942 44 H 0.022 0.978 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.693 -19.250 3.973 27.125 hybrid contribution 0.939 1.675 -0.379 1.958 sum -17.754 -17.575 3.594 25.239 Atomic orbital electron populations 1.20963 0.84269 1.05686 1.05221 1.22434 0.99582 0.86674 0.87396 1.22919 0.93739 1.02442 1.01593 1.21446 0.92654 0.91817 0.95685 1.18244 0.82086 0.87198 0.77820 1.90758 1.71328 1.31569 1.50807 1.48364 1.08018 1.13316 1.60800 1.23131 0.98255 0.87486 0.96684 1.21754 0.95114 0.97618 1.00610 1.21630 0.97402 0.93622 1.00929 1.22064 0.95206 0.97643 0.97519 0.92957 1.20416 0.96265 0.90760 0.86269 1.43848 1.01690 1.75452 1.11196 1.19450 0.84147 1.41637 0.93514 0.91191 1.25745 1.02089 0.99551 0.96992 1.70186 1.33084 1.48275 1.06752 0.85378 0.80265 0.78340 0.76699 1.20146 1.22374 1.20189 1.20687 0.89018 0.93878 0.94255 1.22214 0.99152 0.99675 0.95401 1.21118 0.90036 0.86389 0.96927 0.91429 1.67996 1.39731 0.98253 1.15741 1.24131 0.86949 0.95456 0.89002 1.20779 1.00453 0.87814 1.05248 1.68206 1.09807 1.30666 1.14560 0.87948 0.88701 0.88066 0.81773 0.91865 0.82638 0.88504 0.92247 0.91990 0.93402 0.91825 0.99430 0.94159 0.97766 0.91708 0.91469 0.90707 0.88244 0.88217 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.22 71.23 0.73 -0.17 16 2 C 0.19 3.18 6.83 42.64 0.29 3.48 16 3 C -0.18 -3.89 9.40 22.71 0.21 -3.67 16 4 C 0.13 3.36 6.53 41.98 0.27 3.63 16 5 C 0.56 18.26 7.65 86.97 0.67 18.93 16 6 O -0.57 -21.84 16.03 -3.64 -0.06 -21.90 16 7 N -0.58 -18.33 2.67 -796.68 -2.12 -20.46 16 8 C 0.07 1.69 5.68 86.34 0.49 2.18 16 9 C -0.11 -2.95 6.10 30.68 0.19 -2.76 16 10 C -0.10 -3.41 4.95 31.11 0.15 -3.25 16 11 C -0.10 -4.12 2.51 -10.35 -0.03 -4.15 16 12 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 13 C 0.19 9.42 4.76 86.23 0.41 9.83 16 14 N -0.60 -30.16 2.70 -703.69 -1.90 -32.06 16 15 C -0.26 -13.98 9.57 84.03 0.80 -13.17 16 16 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 17 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 18 N -0.94 -55.86 11.18 21.65 0.24 -55.62 16 19 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 C 0.15 6.36 6.41 86.59 0.56 6.91 16 24 C -0.12 -4.46 5.04 30.68 0.15 -4.31 16 25 C 0.16 5.90 2.60 44.94 0.12 6.02 16 26 H 0.07 2.88 7.09 -2.39 -0.02 2.86 16 27 N -0.50 -11.29 6.42 -177.08 -1.14 -12.43 16 28 C 0.31 5.81 7.64 138.78 1.06 6.87 16 29 C -0.08 -0.92 10.31 71.24 0.73 -0.18 16 30 N -0.52 -9.62 10.25 -176.05 -1.81 -11.42 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.16 3.18 7.83 -2.91 -0.02 3.16 16 35 H 0.06 1.57 7.25 -2.39 -0.02 1.55 16 36 H 0.16 3.60 3.77 -63.51 -0.24 3.36 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 2.31 6.22 -2.39 -0.01 2.30 16 40 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.06 3.53 6.03 -2.38 -0.01 3.52 16 42 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.06 2.65 7.92 -2.39 -0.02 2.63 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.07 2.58 5.33 -2.39 -0.01 2.57 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.27 384.71 3.20 -67.07 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.72 Total: 16.27 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.23 Total: 23.90 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -6.72 Total: -131.99 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.90 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.27 3.20 -67.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021690903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.292 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds