Wall clock time and date at job start Wed Apr 1 2020 04:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38773 * 119.90396 * 2 1 4 4 N 1.31773 * 120.11972 * 179.76700 * 3 2 1 5 5 C 1.33034 * 119.92812 * 0.45885 * 4 3 2 6 6 C 1.48142 * 120.09736 * 179.79305 * 5 4 3 7 7 O 1.21517 * 120.00335 * 172.63003 * 6 5 4 8 8 N 1.34782 * 119.99949 * 352.62897 * 6 5 4 9 9 C 1.46924 * 120.62851 * 6.81953 * 8 6 5 10 10 C 1.53185 * 108.77769 * 126.36807 * 9 8 6 11 11 C 1.53043 * 109.31434 * 54.62961 * 10 9 8 12 12 C 1.53039 * 109.53943 * 298.63739 * 11 10 9 13 13 C 1.46921 * 120.62985 * 186.79249 * 8 6 5 14 14 H 1.08996 * 109.58786 * 113.70442 * 13 8 6 15 15 C 1.53001 * 109.59024 * 353.41836 * 13 8 6 16 16 H 1.09002 * 109.87039 * 50.99930 * 15 13 8 17 17 C 1.54324 * 110.01057 * 289.90614 * 15 13 8 18 18 C 1.55158 * 102.93886 * 218.31432 * 17 15 13 19 19 C 1.54909 * 101.58459 * 35.50280 * 18 17 15 20 20 N 1.47018 * 109.88600 * 172.01706 * 15 13 8 21 21 C 1.36945 * 125.64833 * 298.55110 * 20 15 13 22 22 H 1.07997 * 119.99543 * 345.63586 * 21 20 15 23 23 C 1.38808 * 120.00062 * 165.63816 * 21 20 15 24 24 N 1.31616 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47443 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47173 * 119.99906 * 25 23 21 28 28 H 1.48502 * 109.47099 * 239.99680 * 25 23 21 29 29 C 1.39405 * 119.80892 * 359.51885 * 5 4 3 30 30 N 1.32107 * 119.87299 * 0.25221 * 29 5 4 31 31 H 1.09001 * 109.47112 * 270.02729 * 1 2 3 32 32 H 1.09004 * 109.46810 * 30.02530 * 1 2 3 33 33 H 1.09002 * 109.47205 * 150.02479 * 1 2 3 34 34 H 1.07996 * 119.93777 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.58527 * 246.15628 * 9 8 6 36 36 H 1.09000 * 109.58819 * 6.43191 * 9 8 6 37 37 H 1.09001 * 109.49883 * 174.57983 * 10 9 8 38 38 H 1.08998 * 109.50031 * 294.65094 * 10 9 8 39 39 H 1.09010 * 109.45711 * 58.65787 * 11 10 9 40 40 H 1.09000 * 109.46553 * 178.62839 * 11 10 9 41 41 H 1.08998 * 109.49951 * 301.41171 * 12 11 10 42 42 H 1.08997 * 109.49764 * 181.31295 * 12 11 10 43 43 H 1.09001 * 110.72495 * 99.95040 * 17 15 13 44 44 H 1.08996 * 110.71994 * 336.67482 * 17 15 13 45 45 H 1.08996 * 111.00827 * 277.41990 * 18 17 15 46 46 H 1.09002 * 111.00120 * 153.57300 * 18 17 15 47 47 H 1.08995 * 110.37081 * 81.82753 * 19 18 17 48 48 H 1.08995 * 110.36836 * 204.04334 * 19 18 17 49 49 H 0.97010 * 119.99838 * 179.97438 * 24 23 21 50 50 H 1.07994 * 120.06004 * 180.22859 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2079 0.0046 5 6 4.1847 0.0575 0.0001 6 6 5.6661 0.0588 0.0006 7 8 6.2746 -0.9849 0.1315 8 7 6.3391 1.2175 -0.1440 9 6 5.6252 2.5016 -0.1538 10 6 6.2516 3.4221 0.8983 11 6 7.7556 3.5371 0.6392 12 6 8.4027 2.1555 0.7594 13 6 7.8006 1.2206 -0.2944 14 1 8.0646 1.5725 -1.2917 15 6 8.3402 -0.1965 -0.0911 16 1 7.7908 -0.8961 -0.7210 17 6 8.2040 -0.6060 1.3906 18 6 9.5089 -1.4035 1.6521 19 6 10.5270 -0.6294 0.7782 20 7 9.7711 -0.2397 -0.4260 21 6 10.3122 0.0372 -1.6532 22 1 9.6765 0.0871 -2.5248 23 6 11.6777 0.2536 -1.7768 24 7 12.4524 0.1932 -0.7144 25 14 12.4159 0.6305 -3.4508 26 1 11.3407 0.6408 -4.4750 27 1 13.0765 1.9599 -3.4125 28 1 13.4175 -0.4102 -3.7958 29 6 3.4867 -1.1492 0.0006 30 7 2.1657 -1.1452 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6564 2.1368 -0.0004 35 1 5.7118 2.9604 -1.1388 36 1 4.5736 2.3369 0.0813 37 1 5.7951 4.4099 0.8356 38 1 6.0840 3.0062 1.8918 39 1 7.9222 3.9302 -0.3637 40 1 8.1999 4.2109 1.3718 41 1 8.2153 1.7511 1.7541 42 1 9.4772 2.2418 0.5977 43 1 7.3290 -1.2394 1.5369 44 1 8.1553 0.2746 2.0311 45 1 9.4102 -2.4355 1.3156 46 1 9.7874 -1.3626 2.7052 47 1 10.8837 0.2556 1.3051 48 1 11.3644 -1.2737 0.5104 49 1 13.4067 0.3441 -0.8008 50 1 4.0250 -2.0854 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025194845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:00 Heat of formation + Delta-G solvation = 93.909025 kcal Electronic energy + Delta-G solvation = -32142.063248 eV Core-core repulsion = 28172.318810 eV Total energy + Delta-G solvation = -3969.744439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70425 -40.18052 -37.31576 -36.69685 -35.05686 -33.17057 -32.47855 -32.39225 -30.97393 -29.15731 -28.79998 -26.93460 -25.04490 -24.86342 -24.30764 -23.49161 -22.66870 -21.07969 -20.42584 -19.65164 -18.68035 -17.88224 -17.05242 -16.71683 -16.23979 -15.76302 -15.43705 -15.23641 -14.88098 -14.70106 -14.48341 -14.10576 -13.84522 -13.63880 -13.48054 -13.20519 -13.05174 -12.94303 -12.77386 -12.70622 -12.29818 -11.91004 -11.63870 -11.53270 -11.36130 -11.13618 -11.04998 -10.83437 -10.80819 -10.47608 -10.43275 -10.19589 -10.12596 -9.97046 -9.62862 -9.55560 -9.45639 -9.24119 -9.08656 -8.58368 -8.45140 -7.97140 -6.58327 -5.64137 -2.97753 0.16428 0.70579 2.72478 3.09857 3.43185 3.49743 3.51505 3.58332 3.70130 3.75968 4.08472 4.43661 4.58095 4.66756 4.77068 5.08999 5.12262 5.16936 5.22101 5.22838 5.35528 5.50625 5.51631 5.54174 5.73557 5.77146 5.82922 5.91135 6.01119 6.02226 6.14861 6.17592 6.21630 6.31684 6.42657 6.50763 6.58542 6.64862 6.69290 6.80895 6.81567 6.91856 7.02415 7.12425 7.18529 7.34090 7.56548 7.69791 7.74560 7.80038 7.93477 8.35563 8.50047 9.32310 9.94689 10.65903 11.47484 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003340 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.208575 B = 8381.864897 C = 8683.632213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.092 3.908 3 C 0.044 3.956 4 N -0.400 5.400 5 C 0.037 3.963 6 C 0.551 3.449 7 O -0.499 6.499 8 N -0.575 5.575 9 C 0.041 3.959 10 C -0.126 4.126 11 C -0.123 4.123 12 C -0.124 4.124 13 C 0.133 3.867 14 H 0.075 0.925 15 C 0.163 3.837 16 H 0.073 0.927 17 C -0.125 4.125 18 C -0.151 4.151 19 C 0.175 3.825 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.917 5.917 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.113 3.887 30 N -0.439 5.439 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.053 0.947 36 H 0.166 0.834 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.020 0.980 48 H 0.066 0.934 49 H 0.250 0.750 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.360 4.629 4.607 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 C -0.118 4.118 4 N -0.116 5.116 5 C -0.103 4.103 6 C 0.336 3.664 7 O -0.376 6.376 8 N -0.306 5.306 9 C -0.082 4.082 10 C -0.165 4.165 11 C -0.160 4.160 12 C -0.162 4.162 13 C 0.029 3.971 14 H 0.093 0.907 15 C 0.056 3.944 16 H 0.091 0.909 17 C -0.162 4.162 18 C -0.190 4.190 19 C 0.050 3.950 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.046 4.046 30 N -0.154 5.154 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.071 0.929 36 H 0.180 0.820 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.084 0.916 49 H 0.061 0.939 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.757 4.078 4.570 23.567 hybrid contribution 0.725 0.718 -0.945 1.391 sum -22.032 4.796 3.625 22.838 Atomic orbital electron populations 1.20749 0.87395 1.04242 1.03738 1.22593 0.98732 0.89701 0.93927 1.23932 0.90954 0.99589 0.97319 1.68058 1.07935 1.26872 1.08718 1.22691 0.96798 0.90653 1.00142 1.17676 0.84105 0.84958 0.79664 1.90839 1.65604 1.32760 1.48348 1.48114 1.08201 1.05477 1.68827 1.23539 1.02903 0.83095 0.98642 1.21843 0.96297 0.99042 0.99294 1.21587 0.95046 0.98000 1.01394 1.21976 1.01488 0.93514 0.99209 1.22250 0.75557 1.00435 0.98858 0.90725 1.21690 0.85984 0.91236 0.95462 0.90940 1.23059 0.97786 0.99297 0.96029 1.23017 0.97808 0.99350 0.98799 1.21361 0.92369 0.95646 0.85593 1.44712 1.00386 1.79242 1.07631 1.19005 0.91258 1.40245 0.84514 0.91066 1.24855 0.96613 1.01780 0.96980 1.69965 1.03967 1.55610 1.26837 0.86155 0.79056 0.77589 0.83679 1.20582 1.21880 1.21882 1.23836 0.89668 0.99485 0.91641 1.68467 1.08463 1.28991 1.09471 0.89633 0.89934 0.89892 0.80758 0.92863 0.81960 0.91700 0.92305 0.92270 0.92568 0.91672 0.89572 0.89931 0.92647 0.92683 0.93211 0.96180 0.91562 0.93947 0.79770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.19 36.01 0.37 -0.10 16 2 C 0.09 0.76 6.79 -82.27 -0.56 0.20 16 3 C 0.04 0.35 10.88 -17.38 -0.19 0.16 16 4 N -0.40 -4.40 6.13 -9.61 -0.06 -4.46 16 5 C 0.04 0.49 6.68 -82.85 -0.55 -0.06 16 6 C 0.55 8.93 7.31 -12.19 -0.09 8.84 16 7 O -0.50 -9.23 9.23 5.35 0.05 -9.18 16 8 N -0.57 -9.40 2.96 -166.22 -0.49 -9.89 16 9 C 0.04 0.55 6.16 -3.72 -0.02 0.53 16 10 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 11 C -0.12 -1.83 5.88 -26.69 -0.16 -1.99 16 12 C -0.12 -2.29 4.95 -26.61 -0.13 -2.42 16 13 C 0.13 2.60 2.73 -67.60 -0.18 2.41 16 14 H 0.07 1.63 7.76 -51.93 -0.40 1.23 16 15 C 0.16 3.61 2.28 -66.95 -0.15 3.46 16 16 H 0.07 1.75 5.76 -52.52 -0.30 1.45 16 17 C -0.12 -2.51 5.22 -24.90 -0.13 -2.64 16 18 C -0.15 -3.19 7.08 -24.58 -0.17 -3.36 16 19 C 0.18 4.44 5.41 -2.53 -0.01 4.42 16 20 N -0.60 -15.41 2.88 -162.58 -0.47 -15.88 16 21 C -0.22 -6.21 9.65 -15.06 -0.15 -6.35 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 24 N -0.92 -27.13 10.56 55.49 0.59 -26.54 16 25 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C 0.11 1.36 10.77 -17.00 -0.18 1.18 16 30 N -0.44 -4.81 10.41 -8.94 -0.09 -4.90 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.17 1.96 3.44 -102.54 -0.35 1.60 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.20 5.45 -51.93 -0.28 0.92 16 42 H 0.09 1.89 8.04 -51.93 -0.42 1.47 16 43 H 0.08 1.64 5.62 -51.84 -0.29 1.35 16 44 H 0.06 1.08 5.07 -51.93 -0.26 0.82 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.02 0.54 8.06 -51.93 -0.42 0.12 16 48 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.19 2.11 7.66 -52.49 -0.40 1.71 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -32.07 375.93 -10.10 -42.16 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.69 Total: 3.36 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.58 Total: 2.26 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.53 Total: -61.68 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.05 Total: -9.18 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.07 -10.10 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025194845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.072 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds