Wall clock time and date at job start Wed Apr 1 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38773 * 119.90396 * 2 1 4 4 N 1.31773 * 120.11972 * 179.76700 * 3 2 1 5 5 C 1.33034 * 119.92812 * 0.45885 * 4 3 2 6 6 C 1.48142 * 120.09736 * 179.79305 * 5 4 3 7 7 O 1.21517 * 120.00335 * 172.63003 * 6 5 4 8 8 N 1.34782 * 119.99949 * 352.62897 * 6 5 4 9 9 C 1.46924 * 120.62851 * 6.81953 * 8 6 5 10 10 C 1.53185 * 108.77769 * 126.36807 * 9 8 6 11 11 C 1.53043 * 109.31434 * 54.62961 * 10 9 8 12 12 C 1.53039 * 109.53943 * 298.63739 * 11 10 9 13 13 C 1.46921 * 120.62985 * 186.79249 * 8 6 5 14 14 H 1.08996 * 109.58786 * 113.70442 * 13 8 6 15 15 C 1.53001 * 109.59024 * 353.41836 * 13 8 6 16 16 H 1.09002 * 109.87039 * 50.99930 * 15 13 8 17 17 C 1.54324 * 110.01057 * 289.90614 * 15 13 8 18 18 C 1.55158 * 102.93886 * 218.31432 * 17 15 13 19 19 C 1.54909 * 101.58459 * 35.50280 * 18 17 15 20 20 N 1.47018 * 109.88600 * 172.01706 * 15 13 8 21 21 C 1.36945 * 125.64833 * 298.55110 * 20 15 13 22 22 H 1.07997 * 119.99543 * 345.63586 * 21 20 15 23 23 C 1.38808 * 120.00062 * 165.63816 * 21 20 15 24 24 N 1.31616 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47443 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47173 * 119.99906 * 25 23 21 28 28 H 1.48502 * 109.47099 * 239.99680 * 25 23 21 29 29 C 1.39405 * 119.80892 * 359.51885 * 5 4 3 30 30 N 1.32107 * 119.87299 * 0.25221 * 29 5 4 31 31 H 1.09001 * 109.47112 * 270.02729 * 1 2 3 32 32 H 1.09004 * 109.46810 * 30.02530 * 1 2 3 33 33 H 1.09002 * 109.47205 * 150.02479 * 1 2 3 34 34 H 1.07996 * 119.93777 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.58527 * 246.15628 * 9 8 6 36 36 H 1.09000 * 109.58819 * 6.43191 * 9 8 6 37 37 H 1.09001 * 109.49883 * 174.57983 * 10 9 8 38 38 H 1.08998 * 109.50031 * 294.65094 * 10 9 8 39 39 H 1.09010 * 109.45711 * 58.65787 * 11 10 9 40 40 H 1.09000 * 109.46553 * 178.62839 * 11 10 9 41 41 H 1.08998 * 109.49951 * 301.41171 * 12 11 10 42 42 H 1.08997 * 109.49764 * 181.31295 * 12 11 10 43 43 H 1.09001 * 110.72495 * 99.95040 * 17 15 13 44 44 H 1.08996 * 110.71994 * 336.67482 * 17 15 13 45 45 H 1.08996 * 111.00827 * 277.41990 * 18 17 15 46 46 H 1.09002 * 111.00120 * 153.57300 * 18 17 15 47 47 H 1.08995 * 110.37081 * 81.82753 * 19 18 17 48 48 H 1.08995 * 110.36836 * 204.04334 * 19 18 17 49 49 H 0.97010 * 119.99838 * 179.97438 * 24 23 21 50 50 H 1.07994 * 120.06004 * 180.22859 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2079 0.0046 5 6 4.1847 0.0575 0.0001 6 6 5.6661 0.0588 0.0006 7 8 6.2746 -0.9849 0.1315 8 7 6.3391 1.2175 -0.1440 9 6 5.6252 2.5016 -0.1538 10 6 6.2516 3.4221 0.8983 11 6 7.7556 3.5371 0.6392 12 6 8.4027 2.1555 0.7594 13 6 7.8006 1.2206 -0.2944 14 1 8.0646 1.5725 -1.2917 15 6 8.3402 -0.1965 -0.0911 16 1 7.7908 -0.8961 -0.7210 17 6 8.2040 -0.6060 1.3906 18 6 9.5089 -1.4035 1.6521 19 6 10.5270 -0.6294 0.7782 20 7 9.7711 -0.2397 -0.4260 21 6 10.3122 0.0372 -1.6532 22 1 9.6765 0.0871 -2.5248 23 6 11.6777 0.2536 -1.7768 24 7 12.4524 0.1932 -0.7144 25 14 12.4159 0.6305 -3.4508 26 1 11.3407 0.6408 -4.4750 27 1 13.0765 1.9599 -3.4125 28 1 13.4175 -0.4102 -3.7958 29 6 3.4867 -1.1492 0.0006 30 7 2.1657 -1.1452 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6564 2.1368 -0.0004 35 1 5.7118 2.9604 -1.1388 36 1 4.5736 2.3369 0.0813 37 1 5.7951 4.4099 0.8356 38 1 6.0840 3.0062 1.8918 39 1 7.9222 3.9302 -0.3637 40 1 8.1999 4.2109 1.3718 41 1 8.2153 1.7511 1.7541 42 1 9.4772 2.2418 0.5977 43 1 7.3290 -1.2394 1.5369 44 1 8.1553 0.2746 2.0311 45 1 9.4102 -2.4355 1.3156 46 1 9.7874 -1.3626 2.7052 47 1 10.8837 0.2556 1.3051 48 1 11.3644 -1.2737 0.5104 49 1 13.4067 0.3441 -0.8008 50 1 4.0250 -2.0854 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025194845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:59 Heat of formation + Delta-G solvation = 74.164606 kcal Electronic energy + Delta-G solvation = -32142.919431 eV Core-core repulsion = 28172.318810 eV Total energy + Delta-G solvation = -3970.600621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.63747 -41.45314 -38.86066 -38.15075 -35.95967 -34.53456 -33.85312 -33.67538 -32.44537 -31.16675 -29.60695 -28.45224 -26.57573 -25.96350 -25.81227 -24.49274 -23.98050 -22.35701 -22.00020 -21.39135 -20.01298 -19.12332 -18.57550 -17.92506 -17.30286 -16.94175 -16.84777 -16.62537 -16.34486 -15.98435 -15.80253 -15.57178 -15.24413 -15.00587 -14.66715 -14.38695 -14.26193 -13.97005 -13.72797 -13.68101 -13.56314 -13.34134 -13.10704 -13.03116 -12.89170 -12.75413 -12.56312 -12.46340 -12.27083 -12.01220 -11.99953 -11.87089 -11.66693 -11.47625 -11.26615 -11.17503 -11.07729 -10.71430 -10.46782 -10.19155 -9.62831 -9.40201 -8.67900 -7.83512 -5.19395 -0.67425 -0.05536 1.42378 1.43083 1.53445 1.66333 1.88836 2.50005 2.66886 2.84699 3.03943 3.31508 3.33941 3.57672 3.79153 3.89660 3.91528 3.96173 4.05637 4.11608 4.20658 4.24303 4.35044 4.40416 4.47546 4.50358 4.63762 4.72696 4.82089 4.83361 4.87424 4.89463 5.00087 5.01445 5.06342 5.09325 5.19783 5.24725 5.27260 5.32797 5.33955 5.46359 5.51700 5.53449 5.67501 5.72727 5.79052 5.91447 6.06391 6.25657 6.47017 6.63395 7.10995 7.17913 7.83309 8.52784 9.27313 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003340 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.208575 B = 8381.864897 C = 8683.632213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.103 3.897 3 C 0.059 3.941 4 N -0.408 5.408 5 C 0.015 3.985 6 C 0.548 3.452 7 O -0.533 6.533 8 N -0.578 5.578 9 C 0.038 3.962 10 C -0.118 4.118 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.144 3.856 14 H 0.043 0.957 15 C 0.163 3.837 16 H 0.052 0.948 17 C -0.108 4.108 18 C -0.140 4.140 19 C 0.185 3.815 20 N -0.612 5.612 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.059 4.059 24 N -0.945 5.945 25 Si 0.970 3.030 26 H -0.270 1.270 27 H -0.290 1.290 28 H -0.292 1.292 29 C 0.108 3.892 30 N -0.459 5.459 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.051 0.949 36 H 0.187 0.813 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.076 0.924 47 H -0.004 1.004 48 H 0.030 0.970 49 H 0.246 0.754 50 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.647 6.586 5.007 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.039 4.039 3 C -0.105 4.105 4 N -0.124 5.124 5 C -0.123 4.123 6 C 0.336 3.664 7 O -0.412 6.412 8 N -0.309 5.309 9 C -0.083 4.083 10 C -0.156 4.156 11 C -0.157 4.157 12 C -0.152 4.152 13 C 0.039 3.961 14 H 0.061 0.939 15 C 0.057 3.943 16 H 0.069 0.931 17 C -0.145 4.145 18 C -0.178 4.178 19 C 0.059 3.941 20 N -0.337 5.337 21 C -0.360 4.360 22 H 0.084 0.916 23 C -0.253 4.253 24 N -0.594 5.594 25 Si 0.799 3.201 26 H -0.195 1.195 27 H -0.217 1.217 28 H -0.219 1.219 29 C -0.050 4.050 30 N -0.174 5.174 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.241 0.759 35 H 0.070 0.930 36 H 0.201 0.799 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.014 0.986 48 H 0.048 0.952 49 H 0.056 0.944 50 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -27.067 6.027 4.970 28.171 hybrid contribution 1.792 0.110 -1.091 2.101 sum -25.274 6.136 3.879 26.296 Atomic orbital electron populations 1.20948 0.84225 1.05691 1.05145 1.23390 1.00658 0.89044 0.90843 1.24712 0.89614 1.01424 0.94725 1.67735 1.09611 1.25860 1.09159 1.21969 0.94676 0.91864 1.03765 1.18126 0.85757 0.84178 0.78370 1.90785 1.66936 1.33648 1.49809 1.48119 1.06625 1.07082 1.69074 1.23871 1.03789 0.81656 0.98994 1.21823 0.94104 1.00689 0.98952 1.21567 0.96955 0.95545 1.01583 1.21802 0.98972 0.95830 0.98561 1.21689 0.78243 0.98588 0.97564 0.93865 1.21695 0.83662 0.92564 0.96385 0.93069 1.22951 0.97475 0.99521 0.94589 1.22919 0.96833 0.98652 0.99427 1.21110 0.92505 0.94409 0.86044 1.44925 1.02110 1.79458 1.07237 1.19225 0.91596 1.39757 0.85436 0.91556 1.25609 0.96954 1.02196 1.00502 1.70161 1.03775 1.56719 1.28706 0.85134 0.78135 0.77048 0.79810 1.19486 1.21655 1.21931 1.23698 0.90340 0.98944 0.92040 1.68540 1.07705 1.30655 1.10509 0.87935 0.86672 0.90309 0.75890 0.93009 0.79897 0.88241 0.92086 0.92861 0.91147 0.91540 0.93990 0.88993 0.91829 0.92764 0.90493 0.98564 0.95159 0.94447 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.19 71.24 0.73 0.30 16 2 C 0.10 1.31 6.79 42.65 0.29 1.60 16 3 C 0.06 0.66 10.88 84.83 0.92 1.58 16 4 N -0.41 -7.75 6.13 -184.33 -1.13 -8.88 16 5 C 0.01 0.37 6.68 41.88 0.28 0.65 16 6 C 0.55 18.01 7.31 86.87 0.63 18.65 16 7 O -0.53 -20.48 9.23 -3.77 -0.03 -20.52 16 8 N -0.58 -18.99 2.96 -798.08 -2.36 -21.35 16 9 C 0.04 0.95 6.16 86.36 0.53 1.48 16 10 C -0.12 -2.66 6.08 30.67 0.19 -2.47 16 11 C -0.12 -3.45 5.88 30.62 0.18 -3.27 16 12 C -0.11 -4.33 4.95 30.67 0.15 -4.17 16 13 C 0.14 5.89 2.73 44.98 0.12 6.02 16 14 H 0.04 2.01 7.76 -2.39 -0.02 2.00 16 15 C 0.16 7.57 2.28 45.34 0.10 7.67 16 16 H 0.05 2.64 5.76 -17.06 -0.10 2.54 16 17 C -0.11 -4.46 5.22 31.78 0.17 -4.30 16 18 C -0.14 -6.05 7.08 31.99 0.23 -5.82 16 19 C 0.18 9.90 5.41 86.85 0.47 10.37 16 20 N -0.61 -33.63 2.88 -668.28 -1.93 -35.55 16 21 C -0.23 -13.63 9.65 84.03 0.81 -12.82 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 24 N -0.94 -58.74 10.56 21.65 0.23 -58.51 16 25 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 26 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 28 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 29 C 0.11 2.55 10.77 84.93 0.91 3.46 16 30 N -0.46 -9.18 10.41 -182.21 -1.90 -11.07 16 31 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.11 -0.20 8.09 -2.39 -0.02 -0.22 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 35 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.19 3.85 3.44 -102.32 -0.35 3.49 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.48 5.45 -2.39 -0.01 2.47 16 42 H 0.04 1.95 8.04 -2.39 -0.02 1.93 16 43 H 0.09 3.69 5.62 -6.18 -0.03 3.66 16 44 H 0.06 2.50 5.07 -2.39 -0.01 2.49 16 45 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.00 -0.21 8.06 -2.39 -0.02 -0.23 16 48 H 0.03 1.81 6.91 -2.39 -0.02 1.79 16 49 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 50 H 0.18 4.25 7.66 -2.91 -0.02 4.22 16 Total: -1.00 -76.01 375.93 2.59 -73.41 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.50 Total: 16.78 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.18 Total: 15.89 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -7.08 Total: -135.37 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.03 Total: -20.52 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -76.01 2.59 -73.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025194845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.578 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds