Wall clock time and date at job start Wed Apr 1 2020 04:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38777 * 119.90737 * 2 1 4 4 N 1.31772 * 120.12137 * 179.77030 * 3 2 1 5 5 C 1.33027 * 119.92973 * 0.50582 * 4 3 2 6 6 C 1.48145 * 120.09920 * 179.76811 * 5 4 3 7 7 O 1.21517 * 120.00172 * 172.10322 * 6 5 4 8 8 N 1.34777 * 120.00033 * 352.10902 * 6 5 4 9 9 C 1.46924 * 120.62609 * 348.61638 * 8 6 5 10 10 C 1.53197 * 108.77723 * 233.62868 * 9 8 6 11 11 C 1.53045 * 109.31027 * 305.37044 * 10 9 8 12 12 C 1.53035 * 109.53887 * 61.36172 * 11 10 9 13 13 C 1.46992 * 120.61754 * 168.64075 * 8 6 5 14 14 H 1.08997 * 109.58353 * 246.14950 * 13 8 6 15 15 C 1.53000 * 109.62869 * 6.59599 * 13 8 6 16 16 H 1.08998 * 109.87556 * 309.90424 * 15 13 8 17 17 C 1.54323 * 109.88200 * 70.91887 * 15 13 8 18 18 C 1.55401 * 102.83174 * 141.51726 * 17 15 13 19 19 C 1.54907 * 101.66573 * 324.66408 * 18 17 15 20 20 N 1.47021 * 109.88556 * 188.88637 * 15 13 8 21 21 C 1.36934 * 125.64830 * 61.60146 * 20 15 13 22 22 H 1.08004 * 119.99806 * 17.89308 * 21 20 15 23 23 C 1.38810 * 120.00016 * 197.89155 * 21 20 15 24 24 N 1.31619 * 120.00340 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99853 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47279 * 59.99607 * 25 23 21 27 27 H 1.48505 * 109.46740 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46605 * 299.99371 * 25 23 21 29 29 C 1.39402 * 119.80729 * 359.49617 * 5 4 3 30 30 N 1.32107 * 119.87900 * 0.24950 * 29 5 4 31 31 H 1.09006 * 109.46885 * 269.98040 * 1 2 3 32 32 H 1.08998 * 109.47196 * 29.97585 * 1 2 3 33 33 H 1.09001 * 109.47764 * 149.98109 * 1 2 3 34 34 H 1.07995 * 119.93419 * 0.02604 * 3 2 1 35 35 H 1.09006 * 109.58688 * 113.84548 * 9 8 6 36 36 H 1.08995 * 109.59123 * 353.41740 * 9 8 6 37 37 H 1.08992 * 109.49691 * 185.41928 * 10 9 8 38 38 H 1.09002 * 109.49430 * 65.31947 * 10 9 8 39 39 H 1.09003 * 109.45803 * 301.34123 * 11 10 9 40 40 H 1.09001 * 109.44322 * 181.37786 * 11 10 9 41 41 H 1.09004 * 109.49876 * 58.58869 * 12 11 10 42 42 H 1.09004 * 109.49604 * 178.64731 * 12 11 10 43 43 H 1.09009 * 110.72155 * 259.97366 * 17 15 13 44 44 H 1.09001 * 110.72388 * 23.24233 * 17 15 13 45 45 H 1.08998 * 111.04025 * 206.52290 * 18 17 15 46 46 H 1.09003 * 110.88863 * 82.72879 * 18 17 15 47 47 H 1.08998 * 110.36584 * 278.08798 * 19 18 17 48 48 H 1.08998 * 110.46307 * 155.80442 * 19 18 17 49 49 H 0.96995 * 119.99967 * 180.02562 * 24 23 21 50 50 H 1.08004 * 120.06416 * 180.22884 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2079 0.0046 5 6 4.1846 0.0575 -0.0010 6 6 5.6661 0.0587 -0.0011 7 8 6.2746 -0.9838 0.1385 8 7 6.3390 1.2162 -0.1558 9 6 5.6389 2.4393 -0.5711 10 6 6.3455 3.0185 -1.8009 11 6 7.8291 3.2202 -1.4840 12 6 8.4691 1.8708 -1.1499 13 6 7.7874 1.2783 0.0873 14 1 7.9858 1.9113 0.9522 15 6 8.3262 -0.1303 0.3448 16 1 7.7184 -0.6272 1.1009 17 6 8.3065 -0.9472 -0.9644 18 6 9.6242 -1.7666 -0.8798 19 6 10.5735 -0.7619 -0.1806 20 7 9.7236 -0.0565 0.7959 21 6 10.1630 0.5653 1.9341 22 1 9.4655 0.8008 2.7243 23 6 11.5048 0.8928 2.0721 24 7 12.3547 0.6063 1.1089 25 14 12.1043 1.7404 3.6252 26 1 11.8229 0.8773 4.8002 27 1 13.5664 1.9803 3.5252 28 1 11.4000 3.0381 3.7840 29 6 3.4866 -1.1491 -0.0010 30 7 2.1656 -1.1453 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3635 -0.8898 -0.5141 34 1 1.6563 2.1367 0.0004 35 1 5.6621 3.1670 0.2401 36 1 4.6052 2.2014 -0.8219 37 1 5.8956 3.9764 -2.0613 38 1 6.2428 2.3281 -2.6381 39 1 7.9302 3.8912 -0.6309 40 1 8.3291 3.6551 -2.3494 41 1 8.3466 1.1913 -1.9934 42 1 9.5309 2.0119 -0.9478 43 1 7.4399 -1.6078 -0.9938 44 1 8.3186 -0.2866 -1.8314 45 1 9.9901 -2.0230 -1.8740 46 1 9.4870 -2.6616 -0.2729 47 1 10.9821 -0.0583 -0.9060 48 1 11.3789 -1.2903 0.3295 49 1 13.2924 0.8348 1.2056 50 1 4.0249 -2.0855 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025194847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:04 Heat of formation + Delta-G solvation = 88.882980 kcal Electronic energy + Delta-G solvation = -32130.855649 eV Core-core repulsion = 28160.893265 eV Total energy + Delta-G solvation = -3969.962384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.63997 -40.17853 -37.31900 -36.68783 -34.98029 -33.13543 -32.49655 -32.39822 -31.00139 -29.16506 -28.77138 -26.95178 -24.98604 -24.81403 -24.31462 -23.51250 -22.66985 -21.06235 -20.43443 -19.65908 -18.62699 -17.84076 -17.05514 -16.67331 -16.18060 -15.79265 -15.47475 -15.23092 -14.89775 -14.65411 -14.49725 -14.07205 -13.84759 -13.65243 -13.30087 -13.18537 -13.03012 -12.96198 -12.81610 -12.68388 -12.24313 -11.94761 -11.63770 -11.52200 -11.35284 -11.11856 -11.07483 -10.85218 -10.78730 -10.47994 -10.46176 -10.18710 -10.13007 -10.01593 -9.60637 -9.57999 -9.48564 -9.24895 -9.17819 -8.66081 -8.46817 -7.98443 -6.56907 -5.66310 -3.00874 0.20038 0.76216 2.73613 3.11030 3.43702 3.48612 3.49370 3.58592 3.73810 3.82605 4.12731 4.46205 4.57504 4.72507 4.79800 5.10121 5.12419 5.16779 5.19128 5.23756 5.31915 5.48958 5.50725 5.54750 5.71120 5.75041 5.80991 5.93034 6.00243 6.01174 6.12267 6.17148 6.19540 6.28114 6.32008 6.45207 6.55353 6.60098 6.67644 6.79828 6.84106 6.92156 7.02166 7.12165 7.18731 7.38906 7.53968 7.66614 7.73238 7.79919 7.90877 8.35297 8.50349 9.31133 9.93283 10.66074 11.46026 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003353 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.296017 B = 8347.872668 C = 8569.377869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.092 3.908 3 C 0.042 3.958 4 N -0.401 5.401 5 C 0.032 3.968 6 C 0.552 3.448 7 O -0.498 6.498 8 N -0.579 5.579 9 C 0.085 3.915 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.125 4.125 13 C 0.135 3.865 14 H 0.077 0.923 15 C 0.166 3.834 16 H 0.067 0.933 17 C -0.125 4.125 18 C -0.152 4.152 19 C 0.177 3.823 20 N -0.594 5.594 21 C -0.226 4.226 22 H 0.069 0.931 23 C -0.002 4.002 24 N -0.915 5.915 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.113 3.887 30 N -0.442 5.442 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.024 0.976 48 H 0.059 0.941 49 H 0.252 0.748 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 2.894 -6.907 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 C -0.120 4.120 4 N -0.119 5.119 5 C -0.108 4.108 6 C 0.338 3.662 7 O -0.374 6.374 8 N -0.311 5.311 9 C -0.038 4.038 10 C -0.172 4.172 11 C -0.159 4.159 12 C -0.163 4.163 13 C 0.031 3.969 14 H 0.095 0.905 15 C 0.059 3.941 16 H 0.085 0.915 17 C -0.162 4.162 18 C -0.190 4.190 19 C 0.052 3.948 20 N -0.318 5.318 21 C -0.355 4.355 22 H 0.087 0.913 23 C -0.199 4.199 24 N -0.561 5.561 25 Si 0.735 3.265 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.047 4.047 30 N -0.157 5.157 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.191 0.809 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -21.619 2.391 -6.723 22.766 hybrid contribution 0.507 0.905 0.825 1.325 sum -21.112 3.295 -5.898 22.167 Atomic orbital electron populations 1.20739 0.87477 1.04152 1.03729 1.22605 0.98703 0.89810 0.93836 1.23831 0.90839 0.99415 0.97943 1.68584 1.08245 1.27846 1.07182 1.22627 0.96800 0.90663 1.00760 1.17699 0.84142 0.84632 0.79763 1.90837 1.65720 1.32083 1.48728 1.48106 1.09455 1.08508 1.65056 1.22617 0.98796 0.86228 0.96152 1.21951 0.96626 1.00457 0.98118 1.21564 0.94866 0.98386 1.01066 1.22006 1.01306 0.95125 0.97894 1.22243 0.75585 1.01850 0.97227 0.90549 1.21599 0.86882 0.89980 0.95670 0.91529 1.23159 0.97607 0.98666 0.96747 1.23061 0.97725 0.99083 0.99156 1.21316 0.91662 0.91174 0.90672 1.44653 1.01114 1.62421 1.23638 1.18886 0.92726 1.30900 0.92995 0.91307 1.24914 0.96683 1.00578 0.97716 1.69936 1.02642 1.51468 1.32085 0.86328 0.77575 0.79695 0.82950 1.21218 1.21704 1.21216 1.23831 0.89728 0.99510 0.91644 1.68464 1.08456 1.28979 1.09824 0.89663 0.89976 0.89947 0.80903 0.92004 0.85649 0.91529 0.92246 0.92137 0.92468 0.91587 0.89471 0.89519 0.92578 0.93180 0.92744 0.95816 0.92269 0.93792 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 36.00 0.37 -0.14 16 2 C 0.09 0.80 6.79 -82.27 -0.56 0.24 16 3 C 0.04 0.35 10.88 -17.38 -0.19 0.16 16 4 N -0.40 -4.62 6.39 -9.62 -0.06 -4.68 16 5 C 0.03 0.42 6.56 -82.85 -0.54 -0.12 16 6 C 0.55 8.98 7.31 -12.19 -0.09 8.89 16 7 O -0.50 -9.18 9.18 5.35 0.05 -9.13 16 8 N -0.58 -9.41 2.96 -166.17 -0.49 -9.90 16 9 C 0.09 1.12 5.80 -3.71 -0.02 1.10 16 10 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 11 C -0.12 -1.77 5.88 -26.69 -0.16 -1.93 16 12 C -0.13 -2.28 4.94 -26.62 -0.13 -2.41 16 13 C 0.13 2.61 2.73 -67.56 -0.18 2.43 16 14 H 0.08 1.66 7.74 -51.93 -0.40 1.26 16 15 C 0.17 3.65 2.29 -66.95 -0.15 3.49 16 16 H 0.07 1.61 5.85 -51.81 -0.30 1.31 16 17 C -0.12 -2.49 5.25 -24.76 -0.13 -2.62 16 18 C -0.15 -3.17 7.09 -24.45 -0.17 -3.34 16 19 C 0.18 4.44 5.38 -2.53 -0.01 4.43 16 20 N -0.59 -15.31 2.92 -162.57 -0.47 -15.79 16 21 C -0.23 -6.33 9.63 -15.06 -0.14 -6.47 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 23 C 0.00 -0.05 5.46 -17.43 -0.10 -0.15 16 24 N -0.91 -26.93 10.71 55.49 0.59 -26.34 16 25 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.11 1.38 10.77 -17.00 -0.18 1.20 16 30 N -0.44 -4.99 10.41 -8.94 -0.09 -5.08 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.13 1.51 4.25 -72.98 -0.31 1.20 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.19 5.42 -51.93 -0.28 0.91 16 42 H 0.09 1.89 8.07 -51.93 -0.42 1.48 16 43 H 0.09 1.70 5.51 -52.46 -0.29 1.41 16 44 H 0.06 1.08 5.01 -51.93 -0.26 0.82 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.02 0.64 7.98 -51.93 -0.41 0.22 16 48 H 0.06 1.65 7.16 -51.93 -0.37 1.28 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.18 2.12 7.67 -52.48 -0.40 1.72 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -31.76 376.69 -10.03 -41.79 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.65 Total: 3.20 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.56 Total: 2.96 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.53 Total: -61.78 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.05 Total: -9.13 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.76 -10.03 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025194847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.675 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds