Wall clock time and date at job start Wed Apr 1 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32168 * 120.53424 * 2 1 4 4 C 1.31855 * 120.96273 * 180.33184 * 3 2 1 5 5 N 1.31877 * 122.10121 * 359.66102 * 4 3 2 6 6 C 1.32141 * 120.96554 * 0.02562 * 5 4 3 7 7 C 1.39930 * 120.54232 * 179.72040 * 2 1 3 8 8 C 1.47834 * 120.93620 * 359.97200 * 7 2 1 9 9 O 1.21557 * 119.99899 * 304.93622 * 8 7 2 10 10 N 1.34775 * 119.99505 * 125.20635 * 8 7 2 11 11 C 1.46917 * 120.63600 * 354.01943 * 10 8 7 12 12 C 1.53193 * 108.78056 * 126.36370 * 11 10 8 13 13 C 1.53041 * 109.31020 * 54.63307 * 12 11 10 14 14 C 1.53041 * 109.53912 * 298.63652 * 13 12 11 15 15 C 1.46935 * 120.62743 * 173.73030 * 10 8 7 16 16 H 1.09001 * 109.58557 * 113.84641 * 15 10 8 17 17 C 1.52999 * 109.58472 * 353.42423 * 15 10 8 18 18 H 1.09009 * 109.87663 * 46.21422 * 17 15 10 19 19 C 1.54326 * 109.88225 * 167.22470 * 17 15 10 20 20 C 1.55155 * 102.94322 * 141.61007 * 19 17 15 21 21 C 1.54913 * 101.57959 * 324.50074 * 20 19 17 22 22 N 1.47021 * 109.88637 * 285.19501 * 17 15 10 23 23 C 1.36941 * 125.64725 * 61.60439 * 22 17 15 24 24 H 1.07996 * 119.99780 * 354.47402 * 23 22 17 25 25 C 1.38807 * 120.00097 * 174.46607 * 23 22 17 26 26 N 1.31624 * 119.99820 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00120 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47237 * 60.00296 * 27 25 23 29 29 H 1.48501 * 109.47119 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47146 * 299.99969 * 27 25 23 31 31 H 1.09003 * 109.47503 * 275.25401 * 1 2 3 32 32 H 1.09004 * 109.47662 * 35.25562 * 1 2 3 33 33 H 1.09000 * 109.47299 * 155.25352 * 1 2 3 34 34 H 1.08011 * 118.94927 * 179.68474 * 4 3 2 35 35 H 1.07992 * 120.53911 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.58772 * 246.15434 * 11 10 8 37 37 H 1.09007 * 109.58808 * 6.43077 * 11 10 8 38 38 H 1.08997 * 109.49473 * 174.58555 * 12 11 10 39 39 H 1.08998 * 109.49501 * 294.64926 * 12 11 10 40 40 H 1.09002 * 109.45538 * 58.65799 * 13 12 11 41 41 H 1.09001 * 109.45495 * 178.62916 * 13 12 11 42 42 H 1.09000 * 109.49591 * 181.31694 * 14 13 12 43 43 H 1.08996 * 109.49502 * 301.41361 * 14 13 12 44 44 H 1.09003 * 110.72424 * 259.97568 * 19 17 15 45 45 H 1.09008 * 110.71649 * 23.25079 * 19 17 15 46 46 H 1.09000 * 111.00634 * 82.57203 * 20 19 17 47 47 H 1.09000 * 111.00632 * 206.42874 * 20 19 17 48 48 H 1.09008 * 110.36328 * 155.84767 * 21 20 19 49 49 H 1.09004 * 110.36829 * 278.05732 * 21 20 19 50 50 H 0.97004 * 119.99921 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1784 1.1384 0.0000 4 6 3.4969 1.1483 -0.0065 5 7 4.2061 0.0364 -0.0067 6 6 3.6164 -1.1461 -0.0008 7 6 2.2180 -1.2051 0.0059 8 6 1.5121 -2.5040 0.0128 9 8 0.6926 -2.7458 0.8774 10 7 1.7813 -3.4222 -0.9363 11 6 2.6743 -3.1003 -2.0576 12 6 3.7794 -4.1589 -2.1277 13 6 3.1443 -5.5489 -2.2091 14 6 2.3094 -5.8046 -0.9522 15 6 1.1921 -4.7665 -0.8659 16 1 0.5017 -4.9068 -1.6976 17 6 0.4441 -4.9298 0.4587 18 1 -0.1768 -4.0533 0.6443 19 6 -0.4367 -6.1962 0.4114 20 6 -0.2939 -6.7726 1.8448 21 6 1.1801 -6.4276 2.1733 22 7 1.4052 -5.1035 1.5577 23 6 2.3506 -4.1908 1.9429 24 1 2.4943 -3.2873 1.3689 25 6 3.1240 -4.4267 3.0711 26 7 2.9490 -5.5280 3.7704 27 14 4.4131 -3.1813 3.5970 28 1 3.7575 -1.8787 3.8775 29 1 5.0981 -3.6653 4.8224 30 1 5.4089 -3.0101 2.5087 31 1 -0.3634 0.0941 1.0233 32 1 -0.3634 0.8392 -0.5932 33 1 -0.3634 -0.9333 -0.4302 34 1 4.0126 2.0973 -0.0115 35 1 4.2039 -2.0523 -0.0014 36 1 2.1072 -3.1019 -2.9886 37 1 3.1171 -2.1165 -1.9014 38 1 4.3926 -3.9866 -3.0122 39 1 4.4019 -4.0944 -1.2353 40 1 2.5028 -5.6040 -3.0886 41 1 3.9283 -6.3025 -2.2836 42 1 1.8764 -6.8037 -1.0001 43 1 2.9455 -5.7251 -0.0706 44 1 -1.4744 -5.9366 0.2016 45 1 -0.0576 -6.9021 -0.3277 46 1 -0.9748 -6.2753 2.5355 47 1 -0.4533 -7.8509 1.8500 48 1 1.3254 -6.3724 3.2522 49 1 1.8495 -7.1700 1.7386 50 1 3.4898 -5.6930 4.5586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025203913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:55 Heat of formation + Delta-G solvation = 76.881386 kcal Electronic energy + Delta-G solvation = -33814.142166 eV Core-core repulsion = 29843.659354 eV Total energy + Delta-G solvation = -3970.482812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.66451 -41.39583 -38.70460 -38.07356 -35.54952 -34.58679 -34.18145 -33.34456 -32.22954 -30.92582 -29.75960 -28.73903 -26.89622 -26.20531 -25.33174 -24.25421 -23.81593 -22.13003 -21.81552 -21.06343 -20.12969 -19.17427 -18.66202 -18.00706 -17.92726 -17.42430 -16.64767 -16.11150 -16.05438 -15.76507 -15.51560 -15.33871 -15.00429 -14.92528 -14.55618 -14.51212 -14.25500 -14.00957 -13.91375 -13.66270 -13.50515 -13.38819 -13.26636 -12.98982 -12.86182 -12.79906 -12.52762 -12.30061 -12.14802 -11.97727 -11.78931 -11.66328 -11.51511 -11.48786 -11.36260 -11.15188 -10.98968 -10.66494 -10.62466 -10.44217 -9.64395 -9.42056 -8.46880 -7.57966 -4.95618 -0.49849 -0.16930 1.30176 1.34432 1.36876 1.69152 2.04911 2.50901 2.56033 2.92568 3.05166 3.25552 3.36519 3.52695 3.81668 3.84772 3.88139 4.03142 4.05715 4.22245 4.25874 4.30905 4.36853 4.40362 4.43462 4.48365 4.56016 4.59870 4.67337 4.73021 4.79585 4.92216 4.95054 4.96544 5.04377 5.10369 5.17323 5.23272 5.25667 5.28318 5.30690 5.35830 5.60492 5.66759 5.73697 5.77626 5.83484 5.97291 6.07855 6.51203 6.53816 6.87760 7.29258 7.36313 8.02471 8.66546 9.41518 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010026 B = 0.006282 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.137893 B = 4456.013354 C = 5258.244955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.212 3.788 3 N -0.527 5.527 4 C 0.305 3.695 5 N -0.537 5.537 6 C 0.177 3.823 7 C -0.241 4.241 8 C 0.573 3.427 9 O -0.515 6.515 10 N -0.594 5.594 11 C 0.104 3.896 12 C -0.131 4.131 13 C -0.109 4.109 14 C -0.120 4.120 15 C 0.147 3.853 16 H 0.089 0.911 17 C 0.112 3.888 18 H 0.096 0.904 19 C -0.119 4.119 20 C -0.132 4.132 21 C 0.142 3.858 22 N -0.586 5.586 23 C -0.156 4.156 24 H 0.091 0.909 25 C -0.087 4.087 26 N -0.955 5.955 27 Si 0.928 3.072 28 H -0.302 1.302 29 H -0.299 1.299 30 H -0.274 1.274 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.238 0.762 35 H 0.162 0.838 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.072 0.928 49 H -0.014 1.014 50 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 6.188 -17.616 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.066 3.934 3 N -0.241 5.241 4 C 0.019 3.981 5 N -0.251 5.251 6 C 0.011 3.989 7 C -0.248 4.248 8 C 0.361 3.639 9 O -0.392 6.392 10 N -0.326 5.326 11 C -0.018 4.018 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.159 4.159 15 C 0.043 3.957 16 H 0.107 0.893 17 C 0.007 3.993 18 H 0.113 0.887 19 C -0.157 4.157 20 C -0.171 4.171 21 C 0.017 3.983 22 N -0.308 5.308 23 C -0.287 4.287 24 H 0.108 0.892 25 C -0.277 4.277 26 N -0.610 5.610 27 Si 0.761 3.239 28 H -0.230 1.230 29 H -0.226 1.226 30 H -0.201 1.201 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.254 0.746 35 H 0.179 0.821 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.003 0.997 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.357 6.983 -17.031 18.710 hybrid contribution 1.009 -0.508 1.362 1.769 sum -2.348 6.475 -15.669 17.116 Atomic orbital electron populations 1.20828 0.85693 1.04623 1.04502 1.22166 0.98804 0.86432 0.86042 1.68407 1.10759 1.29140 1.15834 1.25913 0.86679 0.98020 0.87476 1.68493 1.41785 0.99093 1.15758 1.23437 0.91016 0.96864 0.87623 1.21927 0.96643 0.97090 1.09174 1.17642 0.82311 0.82932 0.81050 1.90780 1.34722 1.76928 1.36800 1.47957 1.47728 1.12429 1.24473 1.21967 0.91706 0.98682 0.89451 1.21897 0.97427 0.95157 1.02474 1.21475 0.99295 0.96412 0.97506 1.21711 0.97769 0.97843 0.98544 1.21870 0.94528 0.80034 0.99315 0.89318 1.22464 0.91930 0.98540 0.86403 0.88736 1.22661 0.99638 0.96856 0.96571 1.22783 0.97444 0.99890 0.96946 1.21917 0.91091 0.85247 1.00045 1.44516 1.36894 1.14492 1.34900 1.19670 1.06162 0.98724 1.04150 0.89190 1.25253 1.03353 0.99111 0.99958 1.69907 1.44117 1.26688 1.20243 0.85840 0.80823 0.79204 0.78042 1.23013 1.22580 1.20059 0.89388 0.87489 0.90292 0.74577 0.82058 0.88558 0.90862 0.88187 0.94004 0.89887 0.91845 0.91692 0.93513 0.90153 0.90745 0.93411 0.90670 0.91003 0.99662 0.95599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 9.58 71.23 0.68 -1.78 16 2 C 0.21 6.31 6.86 42.92 0.29 6.61 16 3 N -0.53 -14.54 10.36 -187.06 -1.94 -16.47 16 4 C 0.31 7.72 12.27 180.84 2.22 9.94 16 5 N -0.54 -16.19 10.42 -198.97 -2.07 -18.26 16 6 C 0.18 5.82 8.70 85.06 0.74 6.56 16 7 C -0.24 -8.01 4.60 -19.91 -0.09 -8.10 16 8 C 0.57 20.78 3.09 86.78 0.27 21.05 16 9 O -0.51 -22.44 9.79 -3.89 -0.04 -22.48 16 10 N -0.59 -18.32 2.83 -799.21 -2.26 -20.58 16 11 C 0.10 2.39 5.94 86.36 0.51 2.91 16 12 C -0.13 -2.99 6.08 30.67 0.19 -2.80 16 13 C -0.11 -2.55 5.89 30.62 0.18 -2.37 16 14 C -0.12 -3.84 4.93 30.53 0.15 -3.69 16 15 C 0.15 4.62 2.51 44.83 0.11 4.73 16 16 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 17 C 0.11 4.38 2.32 45.34 0.11 4.48 16 18 H 0.10 4.14 4.90 -80.16 -0.39 3.74 16 19 C -0.12 -3.88 6.32 31.78 0.20 -3.68 16 20 C -0.13 -5.07 7.09 31.99 0.23 -4.84 16 21 C 0.14 7.06 6.12 86.80 0.53 7.59 16 22 N -0.59 -28.73 1.92 -667.43 -1.28 -30.02 16 23 C -0.16 -8.50 7.43 84.03 0.62 -7.88 16 24 H 0.09 4.65 3.32 -2.91 -0.01 4.64 16 25 C -0.09 -5.11 5.48 84.86 0.47 -4.65 16 26 N -0.95 -59.27 10.04 21.65 0.22 -59.05 16 27 Si 0.93 48.80 29.55 68.60 2.03 50.83 16 28 H -0.30 -16.22 7.11 99.48 0.71 -15.51 16 29 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 30 H -0.27 -13.55 7.11 99.48 0.71 -12.85 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.01 6.73 -2.39 -0.02 2.00 16 34 H 0.24 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.16 5.52 7.83 -2.91 -0.02 5.50 16 36 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.07 1.71 4.90 -2.38 -0.01 1.69 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.20 8.12 -2.39 -0.02 1.19 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 2.00 7.03 -2.39 -0.02 1.98 16 43 H 0.05 2.02 6.42 -2.39 -0.02 2.00 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.15 6.70 -2.38 -0.02 2.13 16 46 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.07 4.23 5.55 -2.38 -0.01 4.22 16 49 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 50 H 0.23 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -73.18 368.86 2.64 -70.53 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.58 Total: 21.41 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 7.41 Total: 24.09 kcal Atomic # 7 Polarization: -137.05 SS G_CDS: -7.34 Total: -144.39 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.04 Total: -22.48 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -73.18 2.64 -70.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025203913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.415 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds