Wall clock time and date at job start Wed Apr 1 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32159 * 120.53855 * 2 1 4 4 C 1.31853 * 120.96680 * 179.72585 * 3 2 1 5 5 N 1.31876 * 122.10068 * 0.02562 * 4 3 2 6 6 C 1.32136 * 120.96163 * 359.97438 * 5 4 3 7 7 C 1.39932 * 120.53568 * 179.72922 * 2 1 3 8 8 C 1.47834 * 120.94034 * 0.26821 * 7 2 1 9 9 O 1.21549 * 120.00045 * 50.66917 * 8 7 2 10 10 N 1.34780 * 119.99714 * 230.67379 * 8 7 2 11 11 C 1.46924 * 120.63182 * 4.00036 * 10 8 7 12 12 C 1.53628 * 108.54066 * 126.37054 * 11 10 8 13 13 C 1.53040 * 109.23963 * 54.85563 * 12 11 10 14 14 C 1.53033 * 109.54119 * 298.50903 * 13 12 11 15 15 C 1.46931 * 120.62647 * 184.28337 * 10 8 7 16 16 H 1.08997 * 109.58243 * 113.79458 * 15 10 8 17 17 C 1.53005 * 109.58669 * 353.51418 * 15 10 8 18 18 H 1.09001 * 109.87112 * 52.21762 * 17 15 10 19 19 C 1.54323 * 109.88109 * 291.04143 * 17 15 10 20 20 C 1.55155 * 102.94173 * 218.39125 * 19 17 15 21 21 C 1.54906 * 101.58070 * 35.50005 * 20 19 17 22 22 N 1.47015 * 109.87997 * 173.23702 * 17 15 10 23 23 C 1.36942 * 125.64730 * 298.31396 * 22 17 15 24 24 H 1.07997 * 119.99794 * 153.66414 * 23 22 17 25 25 C 1.38818 * 120.00154 * 333.67421 * 23 22 17 26 26 N 1.31613 * 119.99999 * 157.22360 * 25 23 22 27 27 Si 1.86797 * 119.99807 * 337.22280 * 25 23 22 28 28 H 1.48494 * 109.47277 * 85.61858 * 27 25 23 29 29 H 1.48501 * 109.46890 * 205.61781 * 27 25 23 30 30 H 1.48501 * 109.46974 * 325.61737 * 27 25 23 31 31 H 1.09003 * 109.47516 * 89.47001 * 1 2 3 32 32 H 1.09005 * 109.47462 * 209.47387 * 1 2 3 33 33 H 1.08999 * 109.47046 * 329.47230 * 1 2 3 34 34 H 1.08002 * 118.94893 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.53755 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.58661 * 246.19774 * 11 10 8 37 37 H 1.08998 * 109.58539 * 6.63046 * 11 10 8 38 38 H 1.08995 * 109.63507 * 294.86315 * 12 11 10 39 39 H 1.08999 * 109.45761 * 174.73907 * 12 11 10 40 40 H 1.09002 * 109.46094 * 178.48884 * 13 12 11 41 41 H 1.09003 * 109.44886 * 58.52827 * 13 12 11 42 42 H 1.09005 * 109.49748 * 301.41542 * 14 13 12 43 43 H 1.09005 * 109.50125 * 181.31614 * 14 13 12 44 44 H 1.09001 * 110.72185 * 336.75369 * 19 17 15 45 45 H 1.09002 * 110.72225 * 100.02844 * 19 17 15 46 46 H 1.09003 * 111.00026 * 277.42792 * 20 19 17 47 47 H 1.09002 * 111.04023 * 153.59141 * 20 19 17 48 48 H 1.09009 * 110.36725 * 204.14860 * 21 20 19 49 49 H 1.09005 * 110.45879 * 81.88333 * 21 20 19 50 50 H 0.96999 * 119.99838 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1481 0.0054 5 7 4.2061 0.0363 0.0105 6 6 3.6163 -1.1462 0.0110 7 6 2.2179 -1.2052 0.0057 8 6 1.5120 -2.5041 0.0059 9 8 0.6389 -2.7215 -0.8113 10 7 1.8365 -3.4473 0.9124 11 6 2.8273 -3.1685 1.9609 12 6 2.1989 -3.4913 3.3250 13 6 1.6838 -4.9324 3.3146 14 6 0.6046 -5.0826 2.2400 15 6 1.2107 -4.7759 0.8670 16 1 1.9632 -5.5260 0.6239 17 6 0.1112 -4.7889 -0.1969 18 1 0.5087 -4.4267 -1.1451 19 6 -1.0672 -3.9010 0.2553 20 6 -2.3080 -4.6989 -0.2254 21 6 -1.8407 -6.1600 -0.0101 22 7 -0.4090 -6.1540 -0.3616 23 6 0.3160 -7.2401 -0.7741 24 1 0.0161 -8.2341 -0.4768 25 6 1.4366 -7.0633 -1.5741 26 7 2.3729 -7.9876 -1.6087 27 14 1.6155 -5.5136 -2.6016 28 1 2.2269 -4.4408 -1.7769 29 1 2.4846 -5.7939 -3.7727 30 1 0.2772 -5.0745 -3.0722 31 1 -0.3634 0.0095 -1.0276 32 1 -0.3634 -0.8947 0.5057 33 1 -0.3633 0.8852 0.5220 34 1 4.0127 2.0971 0.0048 35 1 4.2038 -2.0525 0.0148 36 1 3.7088 -3.7903 1.8053 37 1 3.1091 -2.1161 1.9267 38 1 1.3699 -2.8101 3.5169 39 1 2.9503 -3.3792 4.1066 40 1 1.2612 -5.1741 4.2899 41 1 2.5088 -5.6112 3.0982 42 1 -0.2094 -4.3863 2.4421 43 1 0.2217 -6.1031 2.2489 44 1 -1.0746 -3.7930 1.3400 45 1 -1.0239 -2.9260 -0.2300 46 1 -2.5129 -4.5054 -1.2783 47 1 -3.1802 -4.4732 0.3882 48 1 -2.3899 -6.8347 -0.6670 49 1 -1.9745 -6.4533 1.0311 50 1 3.1557 -7.8643 -2.1680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025203914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:59 Heat of formation + Delta-G solvation = 64.342603 kcal Electronic energy + Delta-G solvation = -33471.871703 eV Core-core repulsion = 29500.845168 eV Total energy + Delta-G solvation = -3971.026535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.70786 -41.55580 -39.01415 -38.24839 -35.57218 -34.71959 -34.38735 -33.48278 -32.40108 -31.75312 -29.78582 -28.92637 -26.85891 -26.20766 -25.40935 -24.56532 -23.86536 -22.39254 -22.05755 -21.60483 -20.01993 -19.31901 -18.73624 -17.91929 -17.71660 -17.39908 -17.17243 -16.71151 -16.38797 -15.96186 -15.49753 -15.33154 -15.26117 -14.98707 -14.82716 -14.61530 -14.58700 -14.23108 -14.10942 -13.99396 -13.72916 -13.29155 -13.24121 -13.12808 -12.94732 -12.91692 -12.65519 -12.49386 -12.22453 -12.03506 -11.92281 -11.79260 -11.65098 -11.61315 -11.48024 -11.31543 -11.04999 -10.77195 -10.59490 -10.44963 -10.15914 -9.50172 -8.75911 -8.21714 -5.45092 -0.56558 -0.18168 1.24971 1.32489 1.44019 1.55395 1.83419 2.37705 2.54957 2.90045 3.00383 3.06428 3.21411 3.30522 3.50102 3.76413 3.80651 3.87476 3.91850 4.03078 4.11778 4.21439 4.23834 4.29466 4.35005 4.39515 4.43632 4.56935 4.59412 4.69359 4.71286 4.77551 4.82139 4.92871 4.97706 4.99118 5.06495 5.08830 5.17943 5.18806 5.22601 5.26181 5.31491 5.44121 5.51525 5.57512 5.71160 5.73765 5.82013 6.12310 6.36098 6.83471 6.86417 7.09514 7.60455 8.22951 8.98669 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.005140 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.796903 B = 5445.835857 C = 5594.002085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.221 3.779 3 N -0.529 5.529 4 C 0.312 3.688 5 N -0.532 5.532 6 C 0.181 3.819 7 C -0.243 4.243 8 C 0.551 3.449 9 O -0.532 6.532 10 N -0.592 5.592 11 C 0.096 3.904 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.114 4.114 15 C 0.145 3.855 16 H 0.041 0.959 17 C 0.138 3.862 18 H 0.061 0.939 19 C -0.118 4.118 20 C -0.128 4.128 21 C 0.124 3.876 22 N -0.624 5.624 23 C -0.221 4.221 24 H 0.058 0.942 25 C -0.011 4.011 26 N -0.945 5.945 27 Si 0.940 3.060 28 H -0.268 1.268 29 H -0.326 1.326 30 H -0.295 1.295 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.238 0.762 35 H 0.176 0.824 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.099 0.901 48 H 0.036 0.964 49 H 0.040 0.960 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 19.149 12.315 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 N -0.243 5.243 4 C 0.026 3.974 5 N -0.246 5.246 6 C 0.015 3.985 7 C -0.251 4.251 8 C 0.339 3.661 9 O -0.411 6.411 10 N -0.324 5.324 11 C -0.026 4.026 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.152 4.152 15 C 0.041 3.959 16 H 0.059 0.941 17 C 0.033 3.967 18 H 0.078 0.922 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.001 4.001 22 N -0.351 5.351 23 C -0.350 4.350 24 H 0.075 0.925 25 C -0.207 4.207 26 N -0.592 5.592 27 Si 0.774 3.226 28 H -0.195 1.195 29 H -0.256 1.256 30 H -0.223 1.223 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.254 0.746 35 H 0.193 0.807 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.117 0.883 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.735 19.780 11.823 23.055 hybrid contribution 0.253 -1.061 -1.339 1.727 sum -0.482 18.718 10.484 21.460 Atomic orbital electron populations 1.20894 0.86029 1.04699 1.04599 1.22094 0.98636 0.86370 0.85480 1.68455 1.10927 1.29016 1.15941 1.25946 0.86528 0.98186 0.86771 1.68561 1.41440 0.98945 1.15678 1.23621 0.90492 0.97337 0.87051 1.21638 0.96970 0.95787 1.10701 1.18098 0.82741 0.83448 0.81800 1.90777 1.31425 1.78989 1.39880 1.48165 1.42141 1.12476 1.29656 1.22224 0.90993 1.02016 0.87385 1.21920 1.01674 0.96490 0.95689 1.21531 0.98039 0.97057 0.98898 1.21858 0.98764 1.01685 0.92885 1.21572 0.95275 0.81439 0.97611 0.94137 1.22048 0.94065 0.83975 0.96629 0.92212 1.23076 0.92657 0.98958 1.00828 1.22750 0.98260 0.94817 1.00756 1.21862 0.84108 0.96287 0.97819 1.45134 1.06303 1.05837 1.77786 1.18502 1.06300 0.86848 1.23363 0.92451 1.25438 0.97120 0.98495 0.99637 1.69940 1.09365 1.37425 1.42462 0.86059 0.75993 0.81676 0.78862 1.19464 1.25587 1.22281 0.89029 0.90214 0.87814 0.74623 0.80689 0.90846 0.88958 0.90815 0.88096 0.89824 0.93067 0.90208 0.92451 0.90072 0.88865 0.93197 0.88296 0.94592 0.94215 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.37 71.24 0.67 -1.50 16 2 C 0.22 5.31 6.86 42.92 0.29 5.61 16 3 N -0.53 -11.55 10.36 -187.07 -1.94 -13.49 16 4 C 0.31 5.83 12.27 180.84 2.22 8.05 16 5 N -0.53 -11.79 10.42 -198.97 -2.07 -13.87 16 6 C 0.18 4.42 8.89 85.07 0.76 5.17 16 7 C -0.24 -6.55 4.79 -19.91 -0.10 -6.64 16 8 C 0.55 18.04 5.32 86.78 0.46 18.50 16 9 O -0.53 -20.65 8.39 -3.87 -0.03 -20.69 16 10 N -0.59 -18.63 2.95 -797.57 -2.35 -20.98 16 11 C 0.10 2.18 5.46 86.51 0.47 2.65 16 12 C -0.12 -2.24 6.10 30.82 0.19 -2.05 16 13 C -0.12 -2.82 5.88 30.62 0.18 -2.64 16 14 C -0.11 -3.57 4.96 30.67 0.15 -3.42 16 15 C 0.15 5.60 2.26 44.98 0.10 5.71 16 16 H 0.04 1.96 7.08 -2.39 -0.02 1.94 16 17 C 0.14 5.92 1.05 45.34 0.05 5.96 16 18 H 0.06 2.97 1.13 -16.69 -0.02 2.95 16 19 C -0.12 -4.06 5.16 31.78 0.16 -3.89 16 20 C -0.13 -4.22 7.08 31.98 0.23 -4.00 16 21 C 0.12 4.91 7.23 86.86 0.63 5.53 16 22 N -0.62 -30.25 2.53 -668.27 -1.69 -31.94 16 23 C -0.22 -12.77 10.06 84.03 0.85 -11.92 16 24 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 25 C -0.01 -0.67 4.79 84.86 0.41 -0.26 16 26 N -0.95 -59.82 13.97 21.65 0.30 -59.51 16 27 Si 0.94 51.73 24.18 68.60 1.66 53.39 16 28 H -0.27 -13.99 5.64 99.48 0.56 -13.43 16 29 H -0.33 -18.34 7.11 99.48 0.71 -17.63 16 30 H -0.30 -16.90 7.10 99.48 0.71 -16.19 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.74 6.36 -2.38 -0.02 1.73 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.24 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.18 4.00 7.52 -2.91 -0.02 3.98 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.79 5.13 -2.39 -0.01 1.78 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 2.24 5.49 -2.38 -0.01 2.22 16 43 H 0.06 2.09 8.01 -2.38 -0.02 2.07 16 44 H 0.08 2.42 5.13 -2.39 -0.01 2.41 16 45 H 0.09 3.22 5.11 -6.60 -0.03 3.18 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 50 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -74.70 365.12 2.37 -72.33 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.78 Total: 13.88 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 7.72 Total: 20.88 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -7.75 Total: -139.79 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.03 Total: -20.69 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 1.66 Total: 53.39 kcal Total: -74.70 2.37 -72.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025203914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.673 kcal (2) G-P(sol) polarization free energy of solvation -74.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds