Wall clock time and date at job start Wed Apr 1 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32156 * 120.54112 * 2 1 4 4 C 1.31854 * 120.96931 * 179.97438 * 3 2 1 5 5 N 1.31885 * 122.09719 * 359.97438 * 4 3 2 6 6 C 1.32132 * 120.96492 * 0.02562 * 5 4 3 7 7 C 1.39933 * 120.53193 * 179.97438 * 2 1 3 8 8 C 1.47822 * 120.93986 * 0.04645 * 7 2 1 9 9 O 1.21551 * 120.00301 * 308.67038 * 8 7 2 10 10 N 1.34783 * 120.00049 * 128.67588 * 8 7 2 11 11 C 1.46926 * 120.62895 * 2.63397 * 10 8 7 12 12 C 1.52762 * 109.00751 * 233.58838 * 11 10 8 13 13 C 1.53042 * 109.38274 * 305.58467 * 12 11 10 14 14 C 1.53043 * 109.53407 * 61.24040 * 13 12 11 15 15 C 1.46923 * 120.63382 * 182.91530 * 10 8 7 16 16 H 1.09000 * 109.58539 * 246.30008 * 15 10 8 17 17 C 1.53008 * 109.58411 * 6.57839 * 15 10 8 18 18 H 1.09005 * 109.86974 * 40.99410 * 17 15 10 19 19 C 1.54325 * 109.88350 * 279.97933 * 17 15 10 20 20 C 1.55399 * 102.82684 * 218.48541 * 19 17 15 21 21 C 1.54909 * 101.66707 * 35.33416 * 20 19 17 22 22 N 1.47021 * 109.88118 * 162.01097 * 17 15 10 23 23 C 1.36938 * 125.64558 * 298.32124 * 22 17 15 24 24 H 1.08006 * 119.99800 * 138.04837 * 23 22 17 25 25 C 1.38810 * 120.00584 * 318.04853 * 23 22 17 26 26 N 1.31618 * 120.00451 * 170.11805 * 25 23 22 27 27 Si 1.86799 * 119.99720 * 350.12098 * 25 23 22 28 28 H 1.48500 * 109.47126 * 88.90633 * 27 25 23 29 29 H 1.48497 * 109.47149 * 208.90581 * 27 25 23 30 30 H 1.48501 * 109.47180 * 328.90955 * 27 25 23 31 31 H 1.08993 * 109.47224 * 273.77999 * 1 2 3 32 32 H 1.09001 * 109.46507 * 33.77560 * 1 2 3 33 33 H 1.08994 * 109.47446 * 153.77131 * 1 2 3 34 34 H 1.08003 * 118.95558 * 180.02562 * 4 3 2 35 35 H 1.07997 * 120.53934 * 180.27861 * 6 5 4 36 36 H 1.08997 * 109.58667 * 353.42175 * 11 10 8 37 37 H 1.08998 * 109.58475 * 113.84406 * 11 10 8 38 38 H 1.09005 * 109.56336 * 185.55502 * 12 11 10 39 39 H 1.08994 * 109.38861 * 65.51182 * 12 11 10 40 40 H 1.09000 * 109.46052 * 301.22434 * 13 12 11 41 41 H 1.09001 * 109.45200 * 181.25395 * 13 12 11 42 42 H 1.09006 * 109.49810 * 178.68384 * 14 13 12 43 43 H 1.09000 * 109.52061 * 58.60601 * 14 13 12 44 44 H 1.09005 * 110.71689 * 336.75131 * 19 17 15 45 45 H 1.08994 * 110.72109 * 100.02198 * 19 17 15 46 46 H 1.09007 * 110.88759 * 277.26709 * 20 19 17 47 47 H 1.09004 * 111.03633 * 153.47676 * 20 19 17 48 48 H 1.09002 * 110.36233 * 204.23497 * 21 20 19 49 49 H 1.08999 * 110.36709 * 81.92205 * 21 20 19 50 50 H 0.96995 * 120.00316 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 0.0005 5 7 4.2062 0.0361 0.0015 6 6 3.6164 -1.1463 0.0016 7 6 2.2179 -1.2053 0.0005 8 6 1.5119 -2.5040 0.0001 9 8 0.6432 -2.7239 0.8213 10 7 1.8316 -3.4445 -0.9109 11 6 2.9183 -3.2161 -1.8729 12 6 2.3880 -3.4473 -3.2868 13 6 1.7558 -4.8385 -3.3709 14 6 0.5824 -4.9274 -2.3924 15 6 1.0959 -4.7152 -0.9649 16 1 1.7599 -5.5339 -0.6876 17 6 -0.0875 -4.6642 0.0037 18 1 -0.5656 -3.6859 -0.0468 19 6 0.3996 -4.9368 1.4424 20 6 -0.7457 -5.8033 2.0360 21 6 -1.1778 -6.6376 0.8045 22 7 -1.0588 -5.7137 -0.3380 23 6 -1.7406 -5.8155 -1.5212 24 1 -1.8652 -6.7798 -1.9913 25 6 -2.2714 -4.6794 -2.1165 26 7 -2.7537 -4.7415 -3.3396 27 14 -2.3011 -3.0624 -1.1817 28 1 -1.0355 -2.3255 -1.4271 29 1 -3.4491 -2.2430 -1.6465 30 1 -2.4424 -3.3332 0.2715 31 1 -0.3633 0.0677 1.0254 32 1 -0.3632 0.8543 -0.5713 33 1 -0.3634 -0.9218 -0.4541 34 1 4.0129 2.0970 0.0009 35 1 4.2038 -2.0525 0.0070 36 1 3.2774 -2.1910 -1.7820 37 1 3.7346 -3.9104 -1.6737 38 1 3.2089 -3.3770 -4.0005 39 1 1.6376 -2.6920 -3.5198 40 1 2.5005 -5.5919 -3.1142 41 1 1.3969 -5.0134 -4.3852 42 1 0.1179 -5.9105 -2.4696 43 1 -0.1516 -4.1584 -2.6332 44 1 1.3376 -5.4920 1.4332 45 1 0.5077 -4.0042 1.9961 46 1 -1.5641 -5.1761 2.3898 47 1 -0.3758 -6.4471 2.8341 48 1 -2.2092 -6.9722 0.9160 49 1 -0.5134 -7.4916 0.6727 50 1 -3.1243 -3.9475 -3.7556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025203916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:08 Heat of formation + Delta-G solvation = 85.526655 kcal Electronic energy + Delta-G solvation = -33665.629283 eV Core-core repulsion = 29695.521358 eV Total energy + Delta-G solvation = -3970.107925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.57835 -40.21794 -37.48236 -36.93336 -34.59358 -33.31576 -32.81420 -32.14882 -31.02115 -29.82910 -28.71564 -27.53598 -25.60039 -24.49882 -24.17782 -23.27581 -22.22977 -21.16341 -20.05763 -19.88253 -19.22119 -18.06186 -17.38877 -17.00899 -16.32208 -15.86896 -15.52887 -15.23357 -14.86491 -14.49545 -14.30052 -14.05239 -13.81235 -13.73583 -13.22444 -13.16804 -12.98052 -12.88052 -12.84428 -12.53121 -12.34150 -12.31098 -11.85289 -11.68483 -11.34944 -11.15590 -11.08455 -10.94920 -10.80504 -10.62392 -10.48407 -10.27573 -10.09070 -9.97258 -9.67936 -9.56459 -9.56135 -9.51526 -9.32241 -8.86048 -8.33315 -8.17706 -6.57759 -6.00246 -3.46871 0.43978 0.81670 2.71177 3.10597 3.30219 3.45148 3.55353 3.60559 3.83577 3.89765 4.19667 4.41327 4.50369 4.79161 4.87618 5.07511 5.09719 5.21218 5.22324 5.29943 5.36167 5.48241 5.57035 5.62439 5.63856 5.69038 5.72301 5.77351 5.86194 5.93754 5.96856 6.09109 6.13623 6.21454 6.32675 6.33493 6.36484 6.39259 6.55977 6.68031 6.69864 6.74408 6.84234 6.90924 6.99687 7.15932 7.38776 7.59039 7.60028 7.81735 8.02204 8.33442 8.40359 8.89960 9.65565 10.32006 11.12973 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.005309 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.090907 B = 5272.824509 C = 5421.257664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.226 3.774 3 N -0.522 5.522 4 C 0.306 3.694 5 N -0.528 5.528 6 C 0.178 3.822 7 C -0.228 4.228 8 C 0.552 3.448 9 O -0.501 6.501 10 N -0.592 5.592 11 C 0.102 3.898 12 C -0.134 4.134 13 C -0.124 4.124 14 C -0.119 4.119 15 C 0.140 3.860 16 H 0.061 0.939 17 C 0.143 3.857 18 H 0.080 0.920 19 C -0.119 4.119 20 C -0.139 4.139 21 C 0.130 3.870 22 N -0.609 5.609 23 C -0.245 4.245 24 H 0.081 0.919 25 C 0.042 3.958 26 N -0.903 5.903 27 Si 0.890 3.110 28 H -0.279 1.279 29 H -0.310 1.310 30 H -0.266 1.266 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.199 0.801 35 H 0.173 0.827 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.022 0.978 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 6.188 4.580 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 N -0.237 5.237 4 C 0.018 3.982 5 N -0.242 5.242 6 C 0.012 3.988 7 C -0.236 4.236 8 C 0.338 3.662 9 O -0.378 6.378 10 N -0.325 5.325 11 C -0.021 4.021 12 C -0.173 4.173 13 C -0.161 4.161 14 C -0.157 4.157 15 C 0.037 3.963 16 H 0.079 0.921 17 C 0.038 3.962 18 H 0.097 0.903 19 C -0.156 4.156 20 C -0.178 4.178 21 C 0.005 3.995 22 N -0.336 5.336 23 C -0.373 4.373 24 H 0.098 0.902 25 C -0.159 4.159 26 N -0.545 5.545 27 Si 0.723 3.277 28 H -0.207 1.207 29 H -0.238 1.238 30 H -0.192 1.192 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.216 0.784 35 H 0.190 0.810 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.367 6.989 4.789 15.825 hybrid contribution -0.157 0.297 0.221 0.402 sum 13.209 7.286 5.009 15.896 Atomic orbital electron populations 1.21147 0.87187 1.05124 1.04620 1.21831 0.97770 0.86592 0.85784 1.68349 1.10272 1.29715 1.15347 1.25120 0.86771 0.97179 0.89084 1.68436 1.41397 0.98919 1.15416 1.23467 0.90661 0.96632 0.88082 1.21875 0.96567 0.96894 1.08222 1.17841 0.83721 0.82633 0.81956 1.90816 1.30860 1.78157 1.38015 1.48258 1.34720 1.17596 1.31887 1.21832 0.89562 1.01104 0.89643 1.21843 1.00614 0.99561 0.95240 1.21672 0.98612 0.94837 1.01010 1.22428 0.95824 1.06793 0.90620 1.22217 0.93271 0.81816 0.98993 0.92126 1.21958 0.88603 0.94734 0.90897 0.90302 1.22989 0.96366 0.99530 0.96746 1.22841 0.98759 0.98697 0.97464 1.21715 0.98284 0.92648 0.86900 1.44897 1.44836 1.30137 1.13737 1.18347 1.27808 0.95489 0.95650 0.90187 1.25470 0.95955 0.98428 0.96024 1.69761 1.42501 1.29426 1.12788 0.86895 0.75665 0.83947 0.81230 1.20730 1.23844 1.19172 0.88653 0.89775 0.88932 0.78417 0.81037 0.90824 0.91040 0.91419 0.91824 0.92853 0.91881 0.86864 0.90466 0.93393 0.88789 0.92043 0.92511 0.93604 0.96049 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.47 36.01 0.34 -1.57 16 2 C 0.23 3.41 6.86 -81.82 -0.56 2.85 16 3 N -0.52 -7.14 10.36 -10.48 -0.11 -7.25 16 4 C 0.31 3.49 12.27 -92.03 -1.13 2.36 16 5 N -0.53 -6.34 10.42 -14.24 -0.15 -6.49 16 6 C 0.18 2.17 8.70 -16.77 -0.15 2.03 16 7 C -0.23 -3.37 4.96 -104.69 -0.52 -3.89 16 8 C 0.55 9.45 6.05 -12.34 -0.07 9.38 16 9 O -0.50 -9.83 8.67 5.32 0.05 -9.79 16 10 N -0.59 -9.73 2.98 -166.60 -0.50 -10.23 16 11 C 0.10 1.31 5.44 -3.93 -0.02 1.29 16 12 C -0.13 -1.86 6.06 -26.83 -0.16 -2.03 16 13 C -0.12 -1.99 5.89 -26.69 -0.16 -2.14 16 14 C -0.12 -2.42 3.70 -26.61 -0.10 -2.52 16 15 C 0.14 2.65 2.75 -67.60 -0.19 2.47 16 16 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 17 C 0.14 3.06 1.31 -66.95 -0.09 2.97 16 18 H 0.08 1.86 1.11 -51.83 -0.06 1.80 16 19 C -0.12 -2.24 5.54 -24.76 -0.14 -2.38 16 20 C -0.14 -2.54 7.09 -24.45 -0.17 -2.71 16 21 C 0.13 2.65 7.24 -2.53 -0.02 2.63 16 22 N -0.61 -14.27 2.54 -162.57 -0.41 -14.68 16 23 C -0.24 -6.48 7.13 -15.06 -0.11 -6.59 16 24 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 25 C 0.04 1.15 3.62 -17.43 -0.06 1.09 16 26 N -0.90 -26.09 13.97 55.49 0.78 -25.31 16 27 Si 0.89 22.71 22.79 -169.99 -3.87 18.84 16 28 H -0.28 -6.77 5.22 56.52 0.30 -6.47 16 29 H -0.31 -8.13 7.11 56.52 0.40 -7.73 16 30 H -0.27 -7.06 6.91 56.52 0.39 -6.67 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.71 4.11 -51.93 -0.21 1.49 16 34 H 0.20 1.48 8.06 -52.48 -0.42 1.05 16 35 H 0.17 1.67 7.28 -52.49 -0.38 1.29 16 36 H 0.07 0.87 4.68 -51.93 -0.24 0.62 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.11 2.62 5.76 -51.93 -0.30 2.32 16 43 H 0.08 1.84 4.83 -51.93 -0.25 1.59 16 44 H 0.05 0.83 7.56 -51.93 -0.39 0.44 16 45 H 0.09 1.83 5.52 -52.45 -0.29 1.54 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -30.41 357.56 -9.41 -39.82 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.28 Total: 6.46 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.30 Total: 3.24 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.39 Total: -63.96 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.05 Total: -9.79 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -3.87 Total: 18.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.41 -9.41 -39.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025203916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.348 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds