Wall clock time and date at job start Wed Apr 1 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32156 * 120.54112 * 2 1 4 4 C 1.31854 * 120.96931 * 179.97438 * 3 2 1 5 5 N 1.31885 * 122.09719 * 359.97438 * 4 3 2 6 6 C 1.32132 * 120.96492 * 0.02562 * 5 4 3 7 7 C 1.39933 * 120.53193 * 179.97438 * 2 1 3 8 8 C 1.47822 * 120.93986 * 0.04645 * 7 2 1 9 9 O 1.21551 * 120.00301 * 308.67038 * 8 7 2 10 10 N 1.34783 * 120.00049 * 128.67588 * 8 7 2 11 11 C 1.46926 * 120.62895 * 2.63397 * 10 8 7 12 12 C 1.52762 * 109.00751 * 233.58838 * 11 10 8 13 13 C 1.53042 * 109.38274 * 305.58467 * 12 11 10 14 14 C 1.53043 * 109.53407 * 61.24040 * 13 12 11 15 15 C 1.46923 * 120.63382 * 182.91530 * 10 8 7 16 16 H 1.09000 * 109.58539 * 246.30008 * 15 10 8 17 17 C 1.53008 * 109.58411 * 6.57839 * 15 10 8 18 18 H 1.09005 * 109.86974 * 40.99410 * 17 15 10 19 19 C 1.54325 * 109.88350 * 279.97933 * 17 15 10 20 20 C 1.55399 * 102.82684 * 218.48541 * 19 17 15 21 21 C 1.54909 * 101.66707 * 35.33416 * 20 19 17 22 22 N 1.47021 * 109.88118 * 162.01097 * 17 15 10 23 23 C 1.36938 * 125.64558 * 298.32124 * 22 17 15 24 24 H 1.08006 * 119.99800 * 138.04837 * 23 22 17 25 25 C 1.38810 * 120.00584 * 318.04853 * 23 22 17 26 26 N 1.31618 * 120.00451 * 170.11805 * 25 23 22 27 27 Si 1.86799 * 119.99720 * 350.12098 * 25 23 22 28 28 H 1.48500 * 109.47126 * 88.90633 * 27 25 23 29 29 H 1.48497 * 109.47149 * 208.90581 * 27 25 23 30 30 H 1.48501 * 109.47180 * 328.90955 * 27 25 23 31 31 H 1.08993 * 109.47224 * 273.77999 * 1 2 3 32 32 H 1.09001 * 109.46507 * 33.77560 * 1 2 3 33 33 H 1.08994 * 109.47446 * 153.77131 * 1 2 3 34 34 H 1.08003 * 118.95558 * 180.02562 * 4 3 2 35 35 H 1.07997 * 120.53934 * 180.27861 * 6 5 4 36 36 H 1.08997 * 109.58667 * 353.42175 * 11 10 8 37 37 H 1.08998 * 109.58475 * 113.84406 * 11 10 8 38 38 H 1.09005 * 109.56336 * 185.55502 * 12 11 10 39 39 H 1.08994 * 109.38861 * 65.51182 * 12 11 10 40 40 H 1.09000 * 109.46052 * 301.22434 * 13 12 11 41 41 H 1.09001 * 109.45200 * 181.25395 * 13 12 11 42 42 H 1.09006 * 109.49810 * 178.68384 * 14 13 12 43 43 H 1.09000 * 109.52061 * 58.60601 * 14 13 12 44 44 H 1.09005 * 110.71689 * 336.75131 * 19 17 15 45 45 H 1.08994 * 110.72109 * 100.02198 * 19 17 15 46 46 H 1.09007 * 110.88759 * 277.26709 * 20 19 17 47 47 H 1.09004 * 111.03633 * 153.47676 * 20 19 17 48 48 H 1.09002 * 110.36233 * 204.23497 * 21 20 19 49 49 H 1.08999 * 110.36709 * 81.92205 * 21 20 19 50 50 H 0.96995 * 120.00316 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 0.0005 5 7 4.2062 0.0361 0.0015 6 6 3.6164 -1.1463 0.0016 7 6 2.2179 -1.2053 0.0005 8 6 1.5119 -2.5040 0.0001 9 8 0.6432 -2.7239 0.8213 10 7 1.8316 -3.4445 -0.9109 11 6 2.9183 -3.2161 -1.8729 12 6 2.3880 -3.4473 -3.2868 13 6 1.7558 -4.8385 -3.3709 14 6 0.5824 -4.9274 -2.3924 15 6 1.0959 -4.7152 -0.9649 16 1 1.7599 -5.5339 -0.6876 17 6 -0.0875 -4.6642 0.0037 18 1 -0.5656 -3.6859 -0.0468 19 6 0.3996 -4.9368 1.4424 20 6 -0.7457 -5.8033 2.0360 21 6 -1.1778 -6.6376 0.8045 22 7 -1.0588 -5.7137 -0.3380 23 6 -1.7406 -5.8155 -1.5212 24 1 -1.8652 -6.7798 -1.9913 25 6 -2.2714 -4.6794 -2.1165 26 7 -2.7537 -4.7415 -3.3396 27 14 -2.3011 -3.0624 -1.1817 28 1 -1.0355 -2.3255 -1.4271 29 1 -3.4491 -2.2430 -1.6465 30 1 -2.4424 -3.3332 0.2715 31 1 -0.3633 0.0677 1.0254 32 1 -0.3632 0.8543 -0.5713 33 1 -0.3634 -0.9218 -0.4541 34 1 4.0129 2.0970 0.0009 35 1 4.2038 -2.0525 0.0070 36 1 3.2774 -2.1910 -1.7820 37 1 3.7346 -3.9104 -1.6737 38 1 3.2089 -3.3770 -4.0005 39 1 1.6376 -2.6920 -3.5198 40 1 2.5005 -5.5919 -3.1142 41 1 1.3969 -5.0134 -4.3852 42 1 0.1179 -5.9105 -2.4696 43 1 -0.1516 -4.1584 -2.6332 44 1 1.3376 -5.4920 1.4332 45 1 0.5077 -4.0042 1.9961 46 1 -1.5641 -5.1761 2.3898 47 1 -0.3758 -6.4471 2.8341 48 1 -2.2092 -6.9722 0.9160 49 1 -0.5134 -7.4916 0.6727 50 1 -3.1243 -3.9475 -3.7556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025203916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:06 Heat of formation + Delta-G solvation = 66.139752 kcal Electronic energy + Delta-G solvation = -33666.469962 eV Core-core repulsion = 29695.521358 eV Total energy + Delta-G solvation = -3970.948605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.68431 -41.48501 -39.00835 -38.27971 -35.61621 -34.82614 -34.41393 -33.43995 -32.43216 -31.63975 -29.85464 -28.97119 -26.79238 -26.31953 -25.37884 -24.40141 -23.58172 -22.56113 -21.59071 -21.52556 -20.55206 -19.29283 -18.86402 -17.94257 -17.71660 -17.48502 -17.01925 -16.49888 -16.47349 -15.75564 -15.60809 -15.41709 -15.32232 -14.91213 -14.75850 -14.46781 -14.25940 -14.22068 -14.15355 -14.04060 -13.79776 -13.69352 -13.54322 -13.01820 -12.83101 -12.79623 -12.68372 -12.36494 -12.23902 -12.12699 -11.87387 -11.81956 -11.72600 -11.50963 -11.30191 -11.17831 -10.93992 -10.72401 -10.53560 -10.43539 -10.15225 -9.51865 -8.48747 -8.16048 -5.57900 -0.55901 -0.18621 1.21267 1.31251 1.43891 1.51487 1.90913 2.37543 2.56002 2.84521 3.02864 3.11113 3.19866 3.30213 3.49723 3.75083 3.83493 3.93580 4.00469 4.06865 4.14832 4.24022 4.25948 4.27333 4.38319 4.40906 4.43373 4.46022 4.59356 4.60117 4.70448 4.81469 4.82938 4.85441 4.93397 4.99476 5.06622 5.12383 5.17350 5.19026 5.25467 5.39402 5.41566 5.43698 5.62208 5.70388 5.79846 5.86331 6.00464 6.19594 6.36473 6.86117 6.89365 7.13887 7.59284 8.30492 9.00407 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.005309 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.090907 B = 5272.824509 C = 5421.257664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.214 3.786 3 N -0.534 5.534 4 C 0.312 3.688 5 N -0.527 5.527 6 C 0.194 3.806 7 C -0.244 4.244 8 C 0.550 3.450 9 O -0.533 6.533 10 N -0.594 5.594 11 C 0.100 3.900 12 C -0.130 4.130 13 C -0.118 4.118 14 C -0.112 4.112 15 C 0.149 3.851 16 H 0.077 0.923 17 C 0.132 3.868 18 H 0.060 0.940 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.123 3.877 22 N -0.627 5.627 23 C -0.218 4.218 24 H 0.049 0.951 25 C 0.008 3.992 26 N -0.942 5.942 27 Si 0.942 3.058 28 H -0.267 1.267 29 H -0.325 1.325 30 H -0.283 1.283 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.238 0.762 35 H 0.202 0.798 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.095 0.905 48 H 0.035 0.965 49 H 0.038 0.962 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.848 7.070 5.843 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 N -0.249 5.249 4 C 0.026 3.974 5 N -0.240 5.240 6 C 0.027 3.973 7 C -0.252 4.252 8 C 0.338 3.662 9 O -0.412 6.412 10 N -0.326 5.326 11 C -0.022 4.022 12 C -0.168 4.168 13 C -0.156 4.156 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.095 0.905 17 C 0.028 3.972 18 H 0.077 0.923 19 C -0.147 4.147 20 C -0.168 4.168 21 C -0.001 4.001 22 N -0.354 5.354 23 C -0.347 4.347 24 H 0.067 0.933 25 C -0.189 4.189 26 N -0.587 5.587 27 Si 0.776 3.224 28 H -0.195 1.195 29 H -0.255 1.255 30 H -0.210 1.210 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.219 0.781 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.113 0.887 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.744 7.886 6.065 20.342 hybrid contribution -1.447 0.000 -0.151 1.455 sum 16.297 7.886 5.914 19.046 Atomic orbital electron populations 1.21024 0.88404 1.03716 1.04678 1.21750 0.97459 0.87480 0.86530 1.68392 1.11421 1.28959 1.16135 1.25949 0.86071 0.98598 0.86758 1.68590 1.41029 0.98962 1.15450 1.23878 0.89512 0.97829 0.86051 1.21667 0.97673 0.95274 1.10594 1.18168 0.83300 0.83279 0.81487 1.90788 1.32236 1.78807 1.39403 1.48249 1.35228 1.16573 1.32535 1.22129 0.89115 1.03154 0.87767 1.21821 1.00941 0.96820 0.97182 1.21593 0.97562 0.97402 0.99037 1.22109 0.96710 1.03019 0.93223 1.21837 0.92994 0.83694 0.96983 0.90468 1.22044 0.89053 0.92841 0.93290 0.92293 1.22908 0.97201 0.99791 0.94772 1.22794 0.98192 0.98487 0.97295 1.21867 0.98299 0.92996 0.86971 1.45057 1.45675 1.31189 1.13520 1.18098 1.26497 0.93933 0.96221 0.93318 1.25735 0.96694 1.00131 0.96382 1.69849 1.45042 1.29660 1.14116 0.86102 0.75400 0.81990 0.78925 1.19453 1.25519 1.20985 0.88384 0.88648 0.92264 0.74578 0.78137 0.89220 0.87308 0.87665 0.94596 0.90232 0.92992 0.90654 0.94534 0.91284 0.89041 0.93533 0.88696 0.94635 0.94359 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 9.47 71.24 0.67 -3.08 16 2 C 0.21 6.12 6.86 42.92 0.29 6.42 16 3 N -0.53 -13.27 10.36 -187.06 -1.94 -15.21 16 4 C 0.31 5.92 12.27 180.84 2.22 8.14 16 5 N -0.53 -10.36 10.42 -198.97 -2.07 -12.43 16 6 C 0.19 3.94 8.70 85.07 0.74 4.68 16 7 C -0.24 -6.65 4.96 -19.91 -0.10 -6.75 16 8 C 0.55 17.97 6.05 86.78 0.52 18.49 16 9 O -0.53 -20.62 8.67 -3.87 -0.03 -20.66 16 10 N -0.59 -18.21 2.98 -799.26 -2.38 -20.59 16 11 C 0.10 2.18 5.44 86.22 0.47 2.65 16 12 C -0.13 -3.24 6.06 30.53 0.19 -3.06 16 13 C -0.12 -3.64 5.89 30.62 0.18 -3.46 16 14 C -0.11 -4.63 3.70 30.67 0.11 -4.52 16 15 C 0.15 5.46 2.75 44.98 0.12 5.58 16 16 H 0.08 2.58 7.67 -2.39 -0.02 2.57 16 17 C 0.13 5.61 1.31 45.34 0.06 5.67 16 18 H 0.06 2.82 1.11 -6.88 -0.01 2.81 16 19 C -0.11 -3.92 5.54 31.87 0.18 -3.75 16 20 C -0.13 -4.50 7.09 32.07 0.23 -4.27 16 21 C 0.12 4.97 7.24 86.86 0.63 5.60 16 22 N -0.63 -29.90 2.54 -668.25 -1.69 -31.60 16 23 C -0.22 -12.09 7.13 84.03 0.60 -11.49 16 24 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 25 C 0.01 0.43 3.62 84.86 0.31 0.74 16 26 N -0.94 -57.46 13.97 21.65 0.30 -57.16 16 27 Si 0.94 49.97 22.79 68.60 1.56 51.54 16 28 H -0.27 -13.46 5.22 99.48 0.52 -12.94 16 29 H -0.33 -17.75 7.11 99.48 0.71 -17.04 16 30 H -0.28 -15.58 6.91 99.48 0.69 -14.89 16 31 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 2.24 4.11 -2.39 -0.01 2.23 16 34 H 0.24 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.20 2.81 7.28 -2.91 -0.02 2.79 16 36 H 0.09 1.71 4.68 -2.39 -0.01 1.70 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 3.63 5.76 -2.38 -0.01 3.62 16 43 H 0.04 1.80 4.83 -2.39 -0.01 1.78 16 44 H 0.07 2.16 7.56 -2.38 -0.02 2.15 16 45 H 0.09 3.42 5.52 -16.50 -0.09 3.33 16 46 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -71.51 357.56 1.85 -69.67 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.68 Total: 18.85 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 7.42 Total: 17.59 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -7.79 Total: -136.99 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.03 Total: -20.66 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.56 Total: 51.54 kcal Total: -71.51 1.85 -69.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025203916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.805 kcal (2) G-P(sol) polarization free energy of solvation -71.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds