Wall clock time and date at job start Wed Apr 1 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38810 * 120.42546 * 2 1 4 4 C 1.39494 * 118.26006 * 180.25942 * 3 2 1 5 5 C 1.48453 * 120.54749 * 179.72049 * 4 3 2 6 6 O 1.21470 * 119.99966 * 8.62967 * 5 4 3 7 7 N 1.34779 * 120.00000 * 188.63597 * 5 4 3 8 8 C 1.46927 * 120.62900 * 8.54241 * 7 5 4 9 9 C 1.53197 * 108.77552 * 126.41782 * 8 7 5 10 10 C 1.53043 * 109.31200 * 54.63274 * 9 8 7 11 11 C 1.53038 * 109.53513 * 298.63615 * 10 9 8 12 12 C 1.46925 * 120.63231 * 188.56771 * 7 5 4 13 13 H 1.09002 * 109.58575 * 113.79292 * 12 7 5 14 14 C 1.53002 * 109.70244 * 353.44232 * 12 7 5 15 15 H 1.09001 * 109.87229 * 312.75275 * 14 12 7 16 16 C 1.54326 * 109.88146 * 73.76430 * 14 12 7 17 17 C 1.55160 * 102.93964 * 141.61168 * 16 14 12 18 18 C 1.54912 * 101.57964 * 324.49698 * 17 16 14 19 19 N 1.47022 * 109.88329 * 191.57509 * 14 12 7 20 20 C 1.36937 * 125.64712 * 61.61667 * 19 14 12 21 21 H 1.07994 * 120.00306 * 18.64097 * 20 19 14 22 22 C 1.38813 * 119.99640 * 198.63857 * 20 19 14 23 23 N 1.31620 * 120.00396 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99710 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47280 * 89.99683 * 24 22 20 26 26 H 1.48501 * 109.47041 * 210.00191 * 24 22 20 27 27 H 1.48510 * 109.47070 * 329.99826 * 24 22 20 28 28 N 1.33105 * 118.90395 * 359.45111 * 4 3 2 29 29 C 1.31558 * 120.73509 * 0.27399 * 28 4 3 30 30 N 1.31912 * 121.91887 * 0.02562 * 29 28 4 31 31 H 1.09003 * 109.46890 * 270.29526 * 1 2 3 32 32 H 1.08999 * 109.47397 * 30.29825 * 1 2 3 33 33 H 1.09006 * 109.47384 * 150.29685 * 1 2 3 34 34 H 1.07991 * 120.87031 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.58791 * 246.20176 * 8 7 5 36 36 H 1.08996 * 109.59052 * 6.48856 * 8 7 5 37 37 H 1.08999 * 109.49315 * 294.68340 * 9 8 7 38 38 H 1.08998 * 109.49697 * 174.58796 * 9 8 7 39 39 H 1.09002 * 109.45764 * 178.61646 * 10 9 8 40 40 H 1.08997 * 109.46044 * 58.65876 * 10 9 8 41 41 H 1.09011 * 109.49343 * 181.31363 * 11 10 9 42 42 H 1.08997 * 109.49902 * 301.37644 * 11 10 9 43 43 H 1.09000 * 110.72134 * 259.97150 * 16 14 12 44 44 H 1.08997 * 110.72062 * 23.06978 * 16 14 12 45 45 H 1.08992 * 111.00347 * 82.57315 * 17 16 14 46 46 H 1.09004 * 111.00415 * 206.42177 * 17 16 14 47 47 H 1.09003 * 110.36536 * 155.85299 * 18 17 16 48 48 H 1.09003 * 110.36719 * 278.05689 * 18 17 16 49 49 H 0.96999 * 119.99983 * 179.97438 * 23 22 20 50 50 H 1.08002 * 119.04041 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0056 5 6 4.4061 2.3933 -0.0121 6 8 3.8599 3.4668 0.1452 7 7 5.7405 2.3362 -0.1926 8 6 6.3917 1.0740 -0.5689 9 6 7.2336 1.3094 -1.8270 10 6 8.2032 2.4670 -1.5778 11 6 7.4116 3.7426 -1.2806 12 6 6.5718 3.5348 -0.0164 13 1 7.2302 3.3999 0.8417 14 6 5.6765 4.7546 0.2109 15 1 4.8753 4.7689 -0.5279 16 6 5.0784 4.7089 1.6328 17 6 5.1103 6.1970 2.0711 18 6 6.4204 6.6889 1.4067 19 7 6.4742 5.9857 0.1121 20 6 7.1548 6.4087 -0.9983 21 1 6.9053 6.0082 -1.9697 22 6 8.1654 7.3523 -0.8752 23 7 8.4698 7.8400 0.3088 24 14 9.0934 7.9298 -2.3900 25 1 8.4039 9.1084 -2.9735 26 1 10.4786 8.3053 -2.0087 27 1 9.1355 6.8347 -3.3922 28 7 4.2028 -0.0444 0.0005 29 6 3.4954 -1.1537 0.0062 30 7 2.1764 -1.1397 0.0056 31 1 -0.3633 0.0053 1.0277 32 1 -0.3634 0.8873 -0.5184 33 1 -0.3634 -0.8927 -0.5092 34 1 1.6913 2.1441 0.0004 35 1 7.0355 0.7384 0.2441 36 1 5.6333 0.3175 -0.7705 37 1 6.5784 1.5570 -2.6621 38 1 7.7975 0.4066 -2.0615 39 1 8.8204 2.6206 -2.4630 40 1 8.8416 2.2293 -0.7270 41 1 8.1023 4.5717 -1.1263 42 1 6.7552 3.9676 -2.1212 43 1 4.0546 4.3358 1.6088 44 1 5.6950 4.0969 2.2911 45 1 4.2477 6.7375 1.6815 46 1 5.1661 6.2836 3.1562 47 1 6.3853 7.7672 1.2514 48 1 7.2805 6.4226 2.0211 49 1 9.1763 8.4991 0.3948 50 1 4.0097 -2.1034 0.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025222193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:12 Heat of formation + Delta-G solvation = 89.556667 kcal Electronic energy + Delta-G solvation = -32232.184751 eV Core-core repulsion = 28262.251580 eV Total energy + Delta-G solvation = -3969.933171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.57940 -40.13400 -37.28357 -36.75062 -34.87066 -32.93267 -32.67393 -32.10996 -31.12744 -29.06854 -28.94692 -27.16868 -25.50414 -24.54474 -24.32282 -23.52545 -22.28343 -20.97172 -19.92920 -19.39298 -19.29269 -17.84581 -17.00913 -16.72501 -15.88761 -15.64295 -15.54807 -15.47404 -14.87496 -14.75236 -14.34173 -14.01192 -13.85936 -13.65700 -13.45189 -13.17484 -12.91383 -12.83741 -12.72900 -12.45271 -12.12463 -11.90947 -11.62612 -11.42546 -11.24280 -10.93808 -10.91880 -10.87229 -10.70920 -10.55902 -10.45231 -10.18344 -10.07419 -10.01196 -9.84896 -9.66809 -9.43910 -9.26397 -9.19433 -8.75447 -8.32896 -8.01363 -6.57917 -5.70533 -3.03747 0.36834 0.63337 2.80782 3.06931 3.40314 3.46557 3.47436 3.61756 3.71231 3.78122 4.21406 4.53333 4.63444 4.71782 5.01621 5.16966 5.17444 5.25596 5.29167 5.35065 5.45159 5.48843 5.53501 5.60424 5.72530 5.80911 5.86186 5.92804 5.96692 6.10029 6.14169 6.20113 6.28044 6.35754 6.39935 6.42867 6.59727 6.64158 6.66750 6.71619 6.83600 6.94267 6.98456 7.13116 7.38347 7.56409 7.62708 7.66894 7.74918 7.78410 7.87361 8.31123 8.46395 9.26676 9.88445 10.62335 11.41657 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003594 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.996545 B = 7789.143002 C = 8815.852626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.176 3.824 3 C -0.173 4.173 4 C 0.145 3.855 5 C 0.544 3.456 6 O -0.495 6.495 7 N -0.576 5.576 8 C 0.076 3.924 9 C -0.134 4.134 10 C -0.125 4.125 11 C -0.128 4.128 12 C 0.136 3.864 13 H 0.063 0.937 14 C 0.165 3.835 15 H 0.071 0.929 16 C -0.121 4.121 17 C -0.150 4.150 18 C 0.175 3.825 19 N -0.596 5.596 20 C -0.220 4.220 21 H 0.075 0.925 22 C -0.004 4.004 23 N -0.912 5.912 24 Si 0.900 3.100 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.279 1.279 28 N -0.493 5.493 29 C 0.290 3.710 30 N -0.515 5.515 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.060 0.940 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.024 0.976 49 H 0.252 0.748 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -18.094 -0.053 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.196 4.196 4 C -0.002 4.002 5 C 0.329 3.671 6 O -0.370 6.370 7 N -0.308 5.308 8 C -0.047 4.047 9 C -0.172 4.172 10 C -0.162 4.162 11 C -0.166 4.166 12 C 0.033 3.967 13 H 0.081 0.919 14 C 0.058 3.942 15 H 0.088 0.912 16 C -0.159 4.159 17 C -0.188 4.188 18 C 0.050 3.950 19 N -0.321 5.321 20 C -0.349 4.349 21 H 0.093 0.907 22 C -0.201 4.201 23 N -0.558 5.558 24 Si 0.731 3.269 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 N -0.211 5.211 29 C 0.002 3.998 30 N -0.230 5.230 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.178 0.822 35 H 0.078 0.922 36 H 0.153 0.847 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.042 0.958 49 H 0.062 0.938 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.583 -18.161 -0.002 21.020 hybrid contribution 0.598 0.893 -0.714 1.290 sum -9.985 -17.269 -0.715 19.961 Atomic orbital electron populations 1.20816 0.87336 1.04339 1.03958 1.21836 0.97871 0.87832 0.89622 1.22823 0.94714 1.01355 1.00689 1.22145 0.92323 0.92919 0.92782 1.17874 0.82737 0.86456 0.80013 1.90811 1.71448 1.26678 1.48094 1.48190 1.05321 1.11813 1.65437 1.22815 0.98772 0.86890 0.96191 1.21953 0.98401 0.98839 0.97997 1.21650 0.97774 0.95786 1.01022 1.22347 0.99809 0.97917 0.96480 1.22362 0.92870 0.83774 0.97712 0.91921 1.21600 0.91655 0.84541 0.96414 0.91213 1.23027 1.01105 0.96155 0.95599 1.23006 1.00647 0.96624 0.98570 1.21318 0.90994 0.96914 0.85745 1.44711 1.58156 1.18892 1.10320 1.18962 1.10019 1.19831 0.86104 0.90694 1.24958 0.98246 1.00572 0.96372 1.69950 1.32662 1.32212 1.21014 0.86294 0.79440 0.78788 0.82404 1.21636 1.21735 1.20487 1.68500 1.39661 0.98854 1.14095 1.25129 0.86740 0.97189 0.90739 1.68197 1.10515 1.30488 1.13836 0.89395 0.89742 0.89760 0.82214 0.92182 0.84745 0.92336 0.91711 0.92475 0.92505 0.86258 0.92665 0.89244 0.93923 0.92594 0.93109 0.92274 0.95757 0.93767 0.78300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.22 36.00 0.37 -0.29 16 2 C 0.18 1.70 6.83 -82.23 -0.56 1.14 16 3 C -0.17 -1.95 9.41 -38.90 -0.37 -2.32 16 4 C 0.14 1.93 6.60 -82.64 -0.55 1.38 16 5 C 0.54 8.87 7.24 -12.05 -0.09 8.78 16 6 O -0.49 -9.11 9.22 5.39 0.05 -9.06 16 7 N -0.58 -9.49 2.97 -166.10 -0.49 -9.98 16 8 C 0.08 1.04 5.90 -3.71 -0.02 1.02 16 9 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 10 C -0.12 -1.97 5.88 -26.69 -0.16 -2.12 16 11 C -0.13 -2.50 3.82 -26.61 -0.10 -2.61 16 12 C 0.14 2.66 2.64 -67.60 -0.18 2.48 16 13 H 0.06 1.30 7.86 -51.93 -0.41 0.90 16 14 C 0.16 3.61 2.31 -66.95 -0.15 3.46 16 15 H 0.07 1.67 5.96 -51.69 -0.31 1.36 16 16 C -0.12 -2.45 5.30 -24.89 -0.13 -2.58 16 17 C -0.15 -3.12 7.09 -24.58 -0.17 -3.29 16 18 C 0.18 4.39 5.36 -2.53 -0.01 4.38 16 19 N -0.60 -15.14 3.10 -162.57 -0.50 -15.65 16 20 C -0.22 -5.91 6.80 -15.06 -0.10 -6.01 16 21 H 0.08 1.98 6.49 -52.49 -0.34 1.64 16 22 C 0.00 -0.11 5.46 -17.43 -0.10 -0.21 16 23 N -0.91 -26.47 10.74 55.49 0.60 -25.88 16 24 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 N -0.49 -5.79 6.33 -11.14 -0.07 -5.86 16 29 C 0.29 2.80 12.28 -92.26 -1.13 1.67 16 30 N -0.51 -5.29 10.36 -10.80 -0.11 -5.40 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.16 1.67 7.76 -52.49 -0.41 1.27 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.14 1.68 4.08 -78.98 -0.32 1.36 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.12 2.76 5.52 -51.92 -0.29 2.48 16 42 H 0.05 1.14 7.49 -51.93 -0.39 0.75 16 43 H 0.09 1.76 5.44 -53.24 -0.29 1.47 16 44 H 0.04 0.85 7.66 -51.93 -0.40 0.45 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.63 7.22 -51.93 -0.38 1.25 16 48 H 0.02 0.66 7.96 -51.93 -0.41 0.24 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.20 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -30.75 373.99 -11.26 -42.01 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.72 Total: 4.56 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -3.62 Total: 2.92 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.58 Total: -62.77 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.05 Total: -9.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.75 -11.26 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.571 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds