Wall clock time and date at job start Wed Apr 1 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38810 * 120.42546 * 2 1 4 4 C 1.39494 * 118.26006 * 180.25942 * 3 2 1 5 5 C 1.48453 * 120.54749 * 179.72049 * 4 3 2 6 6 O 1.21470 * 119.99966 * 8.62967 * 5 4 3 7 7 N 1.34779 * 120.00000 * 188.63597 * 5 4 3 8 8 C 1.46927 * 120.62900 * 8.54241 * 7 5 4 9 9 C 1.53197 * 108.77552 * 126.41782 * 8 7 5 10 10 C 1.53043 * 109.31200 * 54.63274 * 9 8 7 11 11 C 1.53038 * 109.53513 * 298.63615 * 10 9 8 12 12 C 1.46925 * 120.63231 * 188.56771 * 7 5 4 13 13 H 1.09002 * 109.58575 * 113.79292 * 12 7 5 14 14 C 1.53002 * 109.70244 * 353.44232 * 12 7 5 15 15 H 1.09001 * 109.87229 * 312.75275 * 14 12 7 16 16 C 1.54326 * 109.88146 * 73.76430 * 14 12 7 17 17 C 1.55160 * 102.93964 * 141.61168 * 16 14 12 18 18 C 1.54912 * 101.57964 * 324.49698 * 17 16 14 19 19 N 1.47022 * 109.88329 * 191.57509 * 14 12 7 20 20 C 1.36937 * 125.64712 * 61.61667 * 19 14 12 21 21 H 1.07994 * 120.00306 * 18.64097 * 20 19 14 22 22 C 1.38813 * 119.99640 * 198.63857 * 20 19 14 23 23 N 1.31620 * 120.00396 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99710 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47280 * 89.99683 * 24 22 20 26 26 H 1.48501 * 109.47041 * 210.00191 * 24 22 20 27 27 H 1.48510 * 109.47070 * 329.99826 * 24 22 20 28 28 N 1.33105 * 118.90395 * 359.45111 * 4 3 2 29 29 C 1.31558 * 120.73509 * 0.27399 * 28 4 3 30 30 N 1.31912 * 121.91887 * 0.02562 * 29 28 4 31 31 H 1.09003 * 109.46890 * 270.29526 * 1 2 3 32 32 H 1.08999 * 109.47397 * 30.29825 * 1 2 3 33 33 H 1.09006 * 109.47384 * 150.29685 * 1 2 3 34 34 H 1.07991 * 120.87031 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.58791 * 246.20176 * 8 7 5 36 36 H 1.08996 * 109.59052 * 6.48856 * 8 7 5 37 37 H 1.08999 * 109.49315 * 294.68340 * 9 8 7 38 38 H 1.08998 * 109.49697 * 174.58796 * 9 8 7 39 39 H 1.09002 * 109.45764 * 178.61646 * 10 9 8 40 40 H 1.08997 * 109.46044 * 58.65876 * 10 9 8 41 41 H 1.09011 * 109.49343 * 181.31363 * 11 10 9 42 42 H 1.08997 * 109.49902 * 301.37644 * 11 10 9 43 43 H 1.09000 * 110.72134 * 259.97150 * 16 14 12 44 44 H 1.08997 * 110.72062 * 23.06978 * 16 14 12 45 45 H 1.08992 * 111.00347 * 82.57315 * 17 16 14 46 46 H 1.09004 * 111.00415 * 206.42177 * 17 16 14 47 47 H 1.09003 * 110.36536 * 155.85299 * 18 17 16 48 48 H 1.09003 * 110.36719 * 278.05689 * 18 17 16 49 49 H 0.96999 * 119.99983 * 179.97438 * 23 22 20 50 50 H 1.08002 * 119.04041 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0056 5 6 4.4061 2.3933 -0.0121 6 8 3.8599 3.4668 0.1452 7 7 5.7405 2.3362 -0.1926 8 6 6.3917 1.0740 -0.5689 9 6 7.2336 1.3094 -1.8270 10 6 8.2032 2.4670 -1.5778 11 6 7.4116 3.7426 -1.2806 12 6 6.5718 3.5348 -0.0164 13 1 7.2302 3.3999 0.8417 14 6 5.6765 4.7546 0.2109 15 1 4.8753 4.7689 -0.5279 16 6 5.0784 4.7089 1.6328 17 6 5.1103 6.1970 2.0711 18 6 6.4204 6.6889 1.4067 19 7 6.4742 5.9857 0.1121 20 6 7.1548 6.4087 -0.9983 21 1 6.9053 6.0082 -1.9697 22 6 8.1654 7.3523 -0.8752 23 7 8.4698 7.8400 0.3088 24 14 9.0934 7.9298 -2.3900 25 1 8.4039 9.1084 -2.9735 26 1 10.4786 8.3053 -2.0087 27 1 9.1355 6.8347 -3.3922 28 7 4.2028 -0.0444 0.0005 29 6 3.4954 -1.1537 0.0062 30 7 2.1764 -1.1397 0.0056 31 1 -0.3633 0.0053 1.0277 32 1 -0.3634 0.8873 -0.5184 33 1 -0.3634 -0.8927 -0.5092 34 1 1.6913 2.1441 0.0004 35 1 7.0355 0.7384 0.2441 36 1 5.6333 0.3175 -0.7705 37 1 6.5784 1.5570 -2.6621 38 1 7.7975 0.4066 -2.0615 39 1 8.8204 2.6206 -2.4630 40 1 8.8416 2.2293 -0.7270 41 1 8.1023 4.5717 -1.1263 42 1 6.7552 3.9676 -2.1212 43 1 4.0546 4.3358 1.6088 44 1 5.6950 4.0969 2.2911 45 1 4.2477 6.7375 1.6815 46 1 5.1661 6.2836 3.1562 47 1 6.3853 7.7672 1.2514 48 1 7.2805 6.4226 2.0211 49 1 9.1763 8.4991 0.3948 50 1 4.0097 -2.1034 0.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025222193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:10 Heat of formation + Delta-G solvation = 72.825886 kcal Electronic energy + Delta-G solvation = -32232.910252 eV Core-core repulsion = 28262.251580 eV Total energy + Delta-G solvation = -3970.658672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.55529 -41.40099 -38.85021 -38.23258 -35.74750 -34.57756 -33.87421 -33.44824 -32.60626 -30.95763 -29.70606 -28.69298 -26.82182 -26.44082 -25.38156 -24.46055 -23.74240 -22.33077 -21.67284 -21.01344 -20.62242 -19.06994 -18.53983 -17.86154 -17.22206 -16.87612 -16.85084 -16.59379 -16.27412 -15.96167 -15.78246 -15.63036 -15.27299 -14.86034 -14.56065 -14.28754 -14.08139 -14.02471 -13.92184 -13.79735 -13.60497 -13.35500 -13.16864 -13.08877 -12.81311 -12.67678 -12.44208 -12.33202 -12.01438 -11.97271 -11.84807 -11.79957 -11.63422 -11.44756 -11.40261 -11.20019 -10.92672 -10.65175 -10.60077 -10.44226 -9.81488 -9.41082 -8.63771 -7.82165 -5.17659 -0.57104 -0.13092 1.45130 1.45514 1.54341 1.68442 1.83976 2.51705 2.71410 2.84155 3.06864 3.27465 3.38237 3.73191 3.76618 3.89864 3.97426 4.06870 4.08135 4.14414 4.23409 4.31151 4.37658 4.42337 4.48599 4.53750 4.63320 4.70966 4.75652 4.82843 4.84846 4.91378 4.95752 4.97758 5.06344 5.09171 5.14075 5.23343 5.27874 5.31736 5.41588 5.47134 5.53160 5.58537 5.64483 5.72264 5.77468 5.79541 5.90382 6.27085 6.47062 6.89868 7.09893 7.17082 7.83166 8.54731 9.29733 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003594 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.996545 B = 7789.143002 C = 8815.852626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.182 3.818 3 C -0.177 4.177 4 C 0.128 3.872 5 C 0.541 3.459 6 O -0.525 6.525 7 N -0.579 5.579 8 C 0.075 3.925 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.147 3.853 13 H 0.048 0.952 14 C 0.165 3.835 15 H 0.053 0.947 16 C -0.109 4.109 17 C -0.137 4.137 18 C 0.182 3.818 19 N -0.613 5.613 20 C -0.215 4.215 21 H 0.074 0.926 22 C -0.059 4.059 23 N -0.946 5.946 24 Si 0.962 3.038 25 H -0.290 1.290 26 H -0.295 1.295 27 H -0.266 1.266 28 N -0.503 5.503 29 C 0.294 3.706 30 N -0.520 5.520 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.154 0.846 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.102 0.898 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.025 0.975 48 H -0.003 1.003 49 H 0.246 0.754 50 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 -21.554 -0.638 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.034 3.966 3 C -0.200 4.200 4 C -0.017 4.017 5 C 0.328 3.672 6 O -0.402 6.402 7 N -0.310 5.310 8 C -0.046 4.046 9 C -0.164 4.164 10 C -0.158 4.158 11 C -0.158 4.158 12 C 0.043 3.957 13 H 0.066 0.934 14 C 0.060 3.940 15 H 0.071 0.929 16 C -0.146 4.146 17 C -0.176 4.176 18 C 0.057 3.943 19 N -0.339 5.339 20 C -0.344 4.344 21 H 0.092 0.908 22 C -0.253 4.253 23 N -0.594 5.594 24 Si 0.790 3.210 25 H -0.218 1.218 26 H -0.221 1.221 27 H -0.191 1.191 28 N -0.221 5.221 29 C 0.007 3.993 30 N -0.236 5.236 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.181 0.819 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.120 0.880 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.015 0.985 49 H 0.055 0.945 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.053 -21.680 -0.604 24.812 hybrid contribution 0.924 1.847 -0.535 2.133 sum -11.129 -19.833 -1.139 22.771 Atomic orbital electron populations 1.20951 0.84781 1.05458 1.05123 1.22359 0.99438 0.86970 0.87811 1.22931 0.93951 1.02337 1.00764 1.21635 0.92627 0.92236 0.95214 1.18307 0.82570 0.87460 0.78839 1.90757 1.71915 1.28197 1.49348 1.48158 1.05509 1.11639 1.65718 1.23074 0.99344 0.85720 0.96467 1.21925 0.97858 0.98981 0.97607 1.21600 0.97964 0.94744 1.01474 1.22086 0.99006 0.98855 0.95853 1.21834 0.92417 0.84425 0.97062 0.93391 1.21598 0.90991 0.84349 0.97112 0.92932 1.22950 1.01749 0.95579 0.94312 1.22901 0.98067 0.96816 0.99773 1.21095 0.92306 0.95045 0.85860 1.44972 1.58141 1.20723 1.10037 1.19152 1.09587 1.19026 0.86637 0.90785 1.25640 0.99413 1.01332 0.98893 1.70138 1.33299 1.33124 1.22869 0.85323 0.77710 0.78339 0.79585 1.21757 1.22150 1.19085 1.68334 1.40079 0.98764 1.14879 1.25852 0.86781 0.97644 0.89039 1.68332 1.10834 1.30536 1.13884 0.87999 0.88401 0.88884 0.81948 0.91474 0.82980 0.92918 0.88265 0.91748 0.92152 0.90239 0.94312 0.88021 0.93691 0.92311 0.90551 0.95609 0.98465 0.94511 0.74719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.22 71.23 0.73 -0.24 16 2 C 0.18 3.01 6.83 42.64 0.29 3.30 16 3 C -0.18 -3.66 9.41 22.71 0.21 -3.45 16 4 C 0.13 3.20 6.60 41.98 0.28 3.48 16 5 C 0.54 17.33 7.24 86.97 0.63 17.96 16 6 O -0.52 -19.36 9.22 -3.62 -0.03 -19.40 16 7 N -0.58 -18.75 2.97 -797.73 -2.37 -21.12 16 8 C 0.08 1.89 5.90 86.36 0.51 2.40 16 9 C -0.13 -3.06 6.08 30.67 0.19 -2.87 16 10 C -0.12 -3.68 5.88 30.62 0.18 -3.50 16 11 C -0.12 -4.82 3.82 30.67 0.12 -4.70 16 12 C 0.15 5.87 2.64 44.97 0.12 5.99 16 13 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 14 C 0.17 7.46 2.31 45.34 0.10 7.57 16 15 H 0.05 2.60 5.96 -4.45 -0.03 2.57 16 16 C -0.11 -4.40 5.30 31.78 0.17 -4.23 16 17 C -0.14 -5.76 7.09 31.99 0.23 -5.54 16 18 C 0.18 9.58 5.36 86.86 0.47 10.04 16 19 N -0.61 -32.58 3.10 -668.25 -2.07 -34.66 16 20 C -0.21 -12.00 6.80 84.03 0.57 -11.43 16 21 H 0.07 4.07 6.49 -2.91 -0.02 4.05 16 22 C -0.06 -3.39 5.46 84.86 0.46 -2.93 16 23 N -0.95 -57.60 10.74 21.65 0.23 -57.36 16 24 Si 0.96 46.17 29.55 68.60 2.03 48.20 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 N -0.50 -10.44 6.33 -189.16 -1.20 -11.63 16 29 C 0.29 4.64 12.28 180.92 2.22 6.86 16 30 N -0.52 -8.96 10.36 -188.10 -1.95 -10.91 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.65 8.10 -2.39 -0.02 0.64 16 33 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.16 3.20 7.76 -2.92 -0.02 3.17 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.15 3.38 4.08 -55.80 -0.23 3.15 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 3.85 5.52 -2.38 -0.01 3.83 16 42 H 0.04 1.64 7.49 -2.39 -0.02 1.62 16 43 H 0.10 3.96 5.44 -28.92 -0.16 3.80 16 44 H 0.04 1.78 7.66 -2.39 -0.02 1.76 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 47 H 0.03 1.49 7.22 -2.39 -0.02 1.48 16 48 H 0.00 -0.15 7.96 -2.39 -0.02 -0.17 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -70.44 373.99 2.68 -67.75 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.58 Total: 20.41 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 7.47 Total: 18.72 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -7.36 Total: -135.69 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.03 Total: -19.40 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -70.44 2.68 -67.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.581 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds